mRNA_E-fasciculatus_F_contig12485.1912.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12485.1912.1
Unique NamemRNA_E-fasciculatus_F_contig12485.1912.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12485.1912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12485contigE-fasciculatus_F_contig12485:3225..3604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927755.2768645-CDS-E-fasciculatus_F_contig12485:3224..35811622927755.2768645-CDS-E-fasciculatus_F_contig12485:3224..3581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12485 3225..3581 +
1695995680.8408277-CDS-E-fasciculatus_F_contig12485:3224..35811695995680.8408277-CDS-E-fasciculatus_F_contig12485:3224..3581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12485 3225..3581 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927755.2888744-UTR-E-fasciculatus_F_contig12485:3581..36041622927755.2888744-UTR-E-fasciculatus_F_contig12485:3581..3604Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12485 3582..3604 +
1695995680.8510697-UTR-E-fasciculatus_F_contig12485:3581..36041695995680.8510697-UTR-E-fasciculatus_F_contig12485:3581..3604Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12485 3582..3604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12485.1912.1prot_E-fasciculatus_F_contig12485.1912.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12485 3225..3581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12485.1912.1

>prot_E-fasciculatus_F_contig12485.1912.1 ID=prot_E-fasciculatus_F_contig12485.1912.1|Name=mRNA_E-fasciculatus_F_contig12485.1912.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
GPRSVRDQAILTTILRTAVILHSKFEEFRRSQRPTTLVHSGLRTSQQYTR
YLFSLSTRIVHCHVDCCALALRCSHATCTGFPSVPCVPCANDNARDTTRE
VPAAELLPRDVLPIVQVM*
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mRNA from alignment at E-fasciculatus_F_contig12485:3225..3604+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12485.1912.1 ID=mRNA_E-fasciculatus_F_contig12485.1912.1|Name=mRNA_E-fasciculatus_F_contig12485.1912.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12485:3225..3604+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCCGCGGTCAGTCAGAGACCAGGCGATATTGACGACGATCCTCCGTAC
TGCTGTAATCCTACATTCTAAATTTGAGGAATTCCGCCGCTCGCAAAGGC
CCACCACGTTGGTACACTCAGGACTCAGGACATCACAGCAGTACACGCGG
TACCTCTTCTCTCTCTCTACGCGCATTGTCCATTGCCACGTGGACTGCTG
TGCGTTGGCTCTTCGGTGTAGTCACGCCACGTGTACAGGGTTCCCGAGCG
TGCCGTGCGTTCCCTGTGCCAATGACAACGCAAGAGACACCACCCGCGAG
GTGCCGGCGGCGGAGCTTCTCCCTAGAGATGTCTTGCCCATTGTACAGGT
CATGTGAAGCAACTAGTTCTGCGAGTAGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12485:3225..3604+

>mRNA_E-fasciculatus_F_contig12485.1912.1 ID=mRNA_E-fasciculatus_F_contig12485.1912.1|Name=mRNA_E-fasciculatus_F_contig12485.1912.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12485:3225..3604+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCCCGCGGTCAGTCAGAGACCAGGCGATATTGACGACGATCCTCCGTAC
TGCTGTAATCCTACATTCTAAATTTGAGGAATTCCGCCGCTCGCAAAGGC
CCACCACGTTGGTACACTCAGGACTCAGGACATCACAGCAGTACACGCGG
TACCTCTTCTCTCTCTCTACGCGCATTGTCCATTGCCACGTGGACTGCTG
TGCGTTGGCTCTTCGGTGTAGTCACGCCACGTGTACAGGGTTCCCGAGCG
TGCCGTGCGTTCCCTGTGCCAATGACAACGCAAGAGACACCACCCGCGAG
GTGCCGGCGGCGGAGCTTCTCCCTAGAGATGTCTTGCCCATTGTACAGGT
CATGTGAGGCCCGCGGTCAGTCAGAGACCAGGCGATATTGACGACGATCC
TCCGTACTGCTGTAATCCTACATTCTAAATTTGAGGAATTCCGCCGCTCG
CAAAGGCCCACCACGTTGGTACACTCAGGACTCAGGACATCACAGCAGTA
CACGCGGTACCTCTTCTCTCTCTCTACGCGCATTGTCCATTGCCACGTGG
ACTGCTGTGCGTTGGCTCTTCGGTGTAGTCACGCCACGTGTACAGGGTTC
CCGAGCGTGCCGTGCGTTCCCTGTGCCAATGACAACGCAAGAGACACCAC
CCGCGAGGTGCCGGCGGCGGAGCTTCTCCCTAGAGATGTCTTGCCCATTG
TACAGGTCATGTGA
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