mRNA_E-fasciculatus_F_contig12480.1910.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12480.1910.1
Unique NamemRNA_E-fasciculatus_F_contig12480.1910.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 444 bits (1143), Expect = 6.640e-140
Identity = 319/421 (75.77%), Postives = 329/421 (78.15%), Query Frame = 1 
Query:  112 GAELTELMERTRSLIARVEALGVGNPRPSSSGTARPSPRSAAPSTDEHPAGEAAAAVPGPREGEASSCGXXXXXXXXXXXXXXLIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQ----------------RLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGESGSAP-TEGRRQTSTDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSRPAGDDTPAEPREGEDANNNDGAPGAGGKPEPEISENDGTAEAGTSGGGGAGIGSNPGTVLLDGSYDKELSSIRGQISRWFVVLASSSGAGGLAADWSGV 1323
            GA+LTELMERTRSLIARVEALG+GNPRPSS GTARPSP SA PST+E PAGEAAAAVPG REGE  +  XXXXXXXXXXXXX LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQ                R+PSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAAAA  XXXXXXXXXXXXXXXXXXXXXXXXXXX        +EGRR+     +                                    PS P G+D P EP  G DA N DGAPGA GK EPEISENDG AE GTSGGGGAG GS+ GTVLLDGSYDKELSSIRGQISRWFVVLASSSGAGGLAADWSGV
Sbjct:  165 GADLTELMERTRSLIARVEALGIGNPRPSSGGTARPSPPSAVPSTEERPAGEAAAAVPGLREGEGEAS-XXXXXXXXXXXXXSLIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQVLTAPLREVFFGWLVERVPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAAAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGRRKNDPPDSQEPT--------------------------------PSGPVGNDAP-EPPGGGDATNKDGAPGADGKREPEISENDG-AEEGTSGGGGAGTGSSSGTVLLDGSYDKELSSIRGQISRWFVVLASSSGAGGLAADWSGV 550
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 431 bits (1107), Expect = 1.340e-134
Identity = 313/400 (78.25%), Postives = 317/400 (79.25%), Query Frame = 1 
Query:  133 MERTRSLIARVEALGVGNPRPSSSGTARPSPRSAAPSTDEHPAGEAAAAVPGPREGEASSCGXXXXXXXXXXXXXX--LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGESGSAPTEGRRQTSTDTASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSRPAGDDTPAEPREGEDANNNDGAPGAGGKPEPEISENDGTAEAGTSGGGGAGIGSNPGTVLLDGSYDKELSSIRGQISRWFVVLASSSGAGGLAADWSGVG 1326
            MERTRSLIARVEALGVGNPRPSS GTARPSP SAAPST+E PAGEAAAAVPGPRE       XXXXXXXXXXXXXX  LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQR+PSDSSDLVRIAFAESLASLAETSRRFLETA+AMRRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  S     EGRRQ                                                      P  G DA NNDGAPGAGGK EPEISENDG AEAG SGGG AG GS+ GTVLLDGSYDKELSSIRGQISRWFVVLASSSGAGGLAADWSGVG
Sbjct:    1 MERTRSLIARVEALGVGNPRPSSGGTARPSPPSAAPSTEERPAGEAAAAVPGPREXXXXXXXXXXXXXXXXXXXXXXSLIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRVPSDSSDLVRIAFAESLASLAETSRRFLETAFAMRRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTS-----EGRRQ------------------------------------------------------PPGGGDATNNDGAPGAGGKREPEISENDG-AEAGPSGGGXAGTGSSSGTVLLDGSYDKELSSIRGQISRWFVVLASSSGAGGLAADWSGVG 340
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A6A5AKC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKC0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.760e-31
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:  361 LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAA 759
            ++I++ ++CS LRH + P+S+L GL L+   G   DDE RLQRL+PY M +LDD    VRA A+R + +L+ +VT  P SD+ +F  YI PALQ  P D  + VRIAFAE L  LAETSRRFLE + A+++ A
Sbjct:   31 IMIVLSLLCSSLRHCQVPQSKLTGLQLISRLGAHADDEVRLQRLIPYVMEVLDDANAAVRAAAIRCITSLVSVVTVLPLSDAAVFPQYILPALQNFPVDVEESVRIAFAECLPLLAETSRRFLEISCALKQRA 163
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A024UN30_9STRA (Non-specific serine/threonine protein kinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UN30_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.090e-29
Identity = 68/133 (51.13%), Postives = 92/133 (69.17%), Query Frame = 1 
Query:  361 LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAA 759
            ++I++ ++CS LRH + P+S+L GL L+   G   DDE RLQRL+PY M +LDDT   VRA A+R + +L+ +VT  P SD+ +F  YI PALQ  P D  + VRIAFAE L  LAETSRRFLE + A+++ A
Sbjct:  553 IMIVLSLLCSSLRHCQVPQSKLTGLQLISRLGAHADDEVRLQRLIPYVMEILDDTNAAVRAAAIRCITSLVSLVTLLPLSDAAVFPQYILPALQNFPVDPEESVRIAFAECLPLLAETSRRFLEISCALKQRA 685
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A3L6VY04_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VY04_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.680e-29
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:  361 LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAA 759
            ++I++ ++CS LRH + P+S+L GL L+   G   DDE RLQRL+PY M +LDD    VRA A+R + +L+ +VT  P SD+ +F  YI PALQ  P D  + VRIAFAE L  LAETSRRFLE + A+++ A
Sbjct:  531 IMIVLSLLCSSLRHCQVPQSKLTGLQLISRLGAHADDEVRLQRLIPYVMEVLDDANAAVRAAAIRCITSLVSVVTVLPLSDAAVFPQYILPALQNFPVDVEESVRIAFAECLPLLAETSRRFLEISCALKQRA 663
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A0P1AGI3_PLAHL (Non-specific serine/threonine protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGI3_PLAHL)

HSP 1 Score: 131 bits (329), Expect = 6.700e-29
Identity = 64/131 (48.85%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:  361 LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 753
            ++I++ ++CS LRH++ P S+L  L L+ A G+   DEARLQRL+PY + ++DD +  VRA A+R++  LL +V SFP +D+++F  Y+ PA+    SD  +LVRI FAE L  LAETSRRFLE A+AM++
Sbjct:  609 IVIVLSLICSSLRHVQVPESKLTALYLIRALGQYTSDEARLQRLIPYLLEVIDDPSATVRALALRTITYLLSLVKSFPLADASVFPQYVLPAMVPFQSDPDELVRITFAECLPQLAETSRRFLELAHAMKQ 739
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A397DEU2_9STRA (Protein kinase domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DEU2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.980e-29
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:  361 LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAA 759
            ++I++ ++CS LRH + P+S+L GL L+   G   DDE RLQRL+PY M +LDD    VRA A+R + +L+ +VT  P SD+ +F  YI PALQ  P D  + VRIAFAE L  LAETSRRFLE + A+++ A
Sbjct:  533 IMIVLSLLCSSLRHCQVPQSKLTGLQLISRLGAHADDEVRLQRLIPYVMEVLDDANAAVRAAAIRCITSLVSVVTVLPLSDAAVFPQYILPALQNFPVDIEESVRIAFAECLPLLAETSRRFLEISCALKQRA 665
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A067CH76_SAPPC (Non-specific serine/threonine protein kinase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CH76_SAPPC)

HSP 1 Score: 130 bits (328), Expect = 8.010e-29
Identity = 66/133 (49.62%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:  361 LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAA 759
            ++I++ ++CS +RH   P+S+L  L L+   G   DDE RLQRLVP+ M +LDD    VRA A+R + +LL +V  FP SD+ IF  YI PALQ  PSD+ ++VRIAFAE L SLAE++RRFLE +  ++  A
Sbjct:  183 IMIILSLLCSSVRHCGVPQSKLTALQLITRLGAFADDEVRLQRLVPFVMEVLDDACAAVRAEAIRCVSSLLSLVKIFPLSDAAIFPQYILPALQHFPSDAEEMVRIAFAECLPSLAESARRFLEISCTLKMRA 315
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A397C0D8_9STRA (Non-specific serine/threonine protein kinase n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C0D8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 8.580e-29
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:  361 LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRRAA 759
            ++I++ ++CS LRH + P+S+L GL L+   G   DDE RLQRL+PY M +LDD    VRA A+R + +L+ +VT  P SD+ +F  YI PALQ  P D  + VRIAFAE L  LAETSRRFLE + A+++ A
Sbjct:  533 IMIVLSLLCSSLRHCQVPQSKLTGLQLISRLGAHADDEVRLQRLIPYVMEVLDDANAAVRAAAIRCITSLVSVVTVLPLSDAAVFPQYILPALQNFPVDIEESVRIAFAECLPLLAETSRRFLEISCALKQRA 665
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Match: A0A6A3T4I0_9STRA (Non-specific serine/threonine protein kinase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T4I0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 9.020e-29
Identity = 63/131 (48.09%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:  361 LIILVQVVCSCLRHLRYPRSRLLGLNLLVAFGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPSDSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMRR 753
            ++I++ ++CS LRH++ P S+L  L L+ + G+   DEARLQRL+PY + ++DD +  VRA A+R++  LL +V SFP +D+++F  Y+ PA+    SD  +LVRI FAE L  LAETSRRFLE A+AM++
Sbjct:  605 IVIILSLICSSLRHVQVPESKLTALYLIRSLGQFTSDEARLQRLIPYLLEVIDDASATVRALALRTITYLLSLVESFPLADASVFPQYVLPAMVPFQSDPDELVRITFAECLPQLAETSRRFLEIAHAMKQ 735
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12480.1910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSX2_9PHAE6.640e-14075.77Non-specific serine/threonine protein kinase n=1 T... [more]
D8LRQ5_ECTSI1.340e-13478.25Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A5AKC0_9STRA1.760e-3150.38Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UN30_9STRA1.090e-2951.13Non-specific serine/threonine protein kinase n=2 T... [more]
A0A3L6VY04_9STRA4.680e-2950.38Protein kinase domain-containing protein (Fragment... [more]
A0A0P1AGI3_PLAHL6.700e-2948.85Non-specific serine/threonine protein kinase n=1 T... [more]
A0A397DEU2_9STRA6.980e-2950.38Protein kinase domain-containing protein n=3 Tax=A... [more]
A0A067CH76_SAPPC8.010e-2949.62Non-specific serine/threonine protein kinase n=1 T... [more]
A0A397C0D8_9STRA8.580e-2950.38Non-specific serine/threonine protein kinase n=8 T... [more]
A0A6A3T4I0_9STRA9.020e-2948.09Non-specific serine/threonine protein kinase n=4 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12480contigE-fasciculatus_F_contig12480:8..3927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score432.2
Seed ortholog evalue3e-118
Seed eggNOG ortholog2880.D8LRQ5
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size1358
Cds size1356
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12480.1910.1prot_E-fasciculatus_F_contig12480.1910.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12480 8..3927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927755.083069-CDS-E-fasciculatus_F_contig12480:7..1121622927755.083069-CDS-E-fasciculatus_F_contig12480:7..112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 8..112 -
1695995680.6680145-CDS-E-fasciculatus_F_contig12480:7..1121695995680.6680145-CDS-E-fasciculatus_F_contig12480:7..112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 8..112 -
1622927755.0956697-CDS-E-fasciculatus_F_contig12480:571..9311622927755.0956697-CDS-E-fasciculatus_F_contig12480:571..931Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 572..931 -
1695995680.681566-CDS-E-fasciculatus_F_contig12480:571..9311695995680.681566-CDS-E-fasciculatus_F_contig12480:571..931Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 572..931 -
1622927755.1115258-CDS-E-fasciculatus_F_contig12480:1264..15131622927755.1115258-CDS-E-fasciculatus_F_contig12480:1264..1513Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 1265..1513 -
1695995680.6951616-CDS-E-fasciculatus_F_contig12480:1264..15131695995680.6951616-CDS-E-fasciculatus_F_contig12480:1264..1513Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 1265..1513 -
1622927755.120881-CDS-E-fasciculatus_F_contig12480:1984..21281622927755.120881-CDS-E-fasciculatus_F_contig12480:1984..2128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 1985..2128 -
1695995680.703463-CDS-E-fasciculatus_F_contig12480:1984..21281695995680.703463-CDS-E-fasciculatus_F_contig12480:1984..2128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 1985..2128 -
1622927755.1300757-CDS-E-fasciculatus_F_contig12480:3126..34781622927755.1300757-CDS-E-fasciculatus_F_contig12480:3126..3478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 3127..3478 -
1695995680.7185326-CDS-E-fasciculatus_F_contig12480:3126..34781695995680.7185326-CDS-E-fasciculatus_F_contig12480:3126..3478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 3127..3478 -
1622927755.142452-CDS-E-fasciculatus_F_contig12480:3781..39271622927755.142452-CDS-E-fasciculatus_F_contig12480:3781..3927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 3782..3927 -
1695995680.730289-CDS-E-fasciculatus_F_contig12480:3781..39271695995680.730289-CDS-E-fasciculatus_F_contig12480:3781..3927Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12480 3782..3927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12480.1910.1

>prot_E-fasciculatus_F_contig12480.1910.1 ID=prot_E-fasciculatus_F_contig12480.1910.1|Name=mRNA_E-fasciculatus_F_contig12480.1910.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=452bp
GGGDGNGDPADGGSRERKRRSGGGGGRGQAAGEGSGGGAELTELMERTRS
LIARVEALGVGNPRPSSSGTARPSPRSAAPSTDEHPAGEAAAAVPGPREG
EASSCGGGGGGGGGGGDGGSLIILVQVVCSCLRHLRYPRSRLLGLNLLVA
FGRCCDDEARLQRLVPYTMTMLDDTAPVVRATAVRSLRALLGMVTSFPPS
DSNIFLLYIFPALQRLPSDSSDLVRIAFAESLASLAETSRRFLETAYAMR
RAAAASAAAVSASAAAAAAATAAATAAAAVATGAGESGSAPTEGRRQTST
DTASTTDSGNKRGSNSSSNSSSSGNAGDQNDPPDSQEPTPSRPAGDDTPA
EPREGEDANNNDGAPGAGGKPEPEISENDGTAEAGTSGGGGAGIGSNPGT
VLLDGSYDKELSSIRGQISRWFVVLASSSGAGGLAADWSGVGIGGGAGGD
GG
back to top

mRNA from alignment at E-fasciculatus_F_contig12480:8..3927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12480.1910.1 ID=mRNA_E-fasciculatus_F_contig12480.1910.1|Name=mRNA_E-fasciculatus_F_contig12480.1910.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3920bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12480:8..3927- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGGGGGTGATGGCAACGGGGACCCCGCGGACGGCGGCAGTAGAGAGCG
GAAGCGGCGCAGCGGCGGCGGCGGTGGGAGAGGGCAAGCGGCCGGTGAGG
GGAGCGGGGGAGGAGCTGAGCTCACGGAGTTGATGGAGAGAACGAGGTTG
GTCGGTTTTTCTGTGTGAAGGGGGGGACTCGCTCGCGGCGTTTTTGGTTG
TGCGTGTTTTGTTGGCCCTGCAGTAGCGAAGAGTTGCCAACCGACACCAN
NNNNNNNNNGCGCTGATCGGTCTAGACCTCGGTTGCTACACGAGGCGTGG
GGTCCCCGTGTACCCCCAATCCTAGGGGGGGTGTCGCATTTGTCTCGGGG
TTAGGTCTAGCTGTTGTCGAGTTATAATCGAGCGAAGCAGGCCACACGCC
GGACTCAAGTCGTTGCTAACCCCCTTGTCTTGTCGCGGATCTCACGAAGG
TCTCTCATCGCCCGCGTGGAAGCTCTCGGCGTCGGCAACCCCCGCCCCTC
TTCCAGCGGCACGGCACGACCATCGCCGCGTTCCGCCGCACCCTCGACGG
ACGAACATCCGGCCGGGGAAGCGGCGGCCGCTGTTCCAGGTCCTCGAGAA
GGGGAGGCTTCTAGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGATGGCGGTTCATTGATCATCCTGGTGCAGGTGGTGTGCTCGTGCCTCA
GGCACCTGCGTTACCCGCGGAGTCGGCTCCTGGGGCTGAACCTCCTCGTG
GCGTTCGGGCGGTGTTGCGACGACGAGGCGAGGCTGCAGCGGCTAGTGCC
GGTGAGAGACCCCAGGGGGATTGGGTGTTGCTTTCGAGAGAGGGGGGGGG
GAGAGACAGAGAGACAGAGAGACAGAAAGGCAGAGACAGACACAAATAGA
GACAGAGACAGAGAGACAGAGACAAACACACACAGAGAGAGAGAGACAAC
GACACAGAGAAGACAGAGACAGAGAGACAAGAGAAGGGGAAAGGGAGAGA
GAGAGAGGTGTGGGGGACGGGGATGGGCACGGAAATTGCACCGAACCGAC
ATCAACGGCAGCGAGCGCACACATGCCAACAATACAAGGCGTGACGATGT
ATGTATCAACGTGCTTTTTTCTGAAGCAGCGGCGATCCGAAGATGTATGT
CCTCACTCCCGATGGCGTCATTTTTTGCAAGGGCGATCGCGGCAATGGCG
CGATGATGCGCAGACTTGCCGGCGCTTCCTCGCCGATTGCCATCGAATTC
GAAGTCATTTGTCGAAAGCACGATGACGATGTCTAGTTAACTACGGCGTC
ATCCACGGTGTGACTGACAACGAGTGCACAATTTACACCAATGTCCGAAT
GGAGGTGATGATCTATCGTGTCTTCGTGCCTTCTGTGTGGCGTTGTGTTT
AGTGTACGCCACCTGCCTTATATGCTTGGAGAGCGCTGACAAGGTACAAC
AGTACCCGTTCATAATACCACCGGCGGCCCCACGAACGTCGCTTTTGCTT
GTGGCATTTCTGTCGTAAAAAGAAGAACAGCAGTTACATGGCCGAACAAC
CCCGACGTGTTGTACGAGCCATATTTTCTTGTGTATAGTGCGGCTGCATT
GCGTGGTATGGCACCGGTGCTGCTGCTGCATCCTTGATACCGCGGGGGTG
CCTGTGGACTGTGTGTTTCTGCAGCAACGCCACGTGTAGAATCACATGGC
AGGATGTGATACGTTTCTCGTTGTAAATGGCCCAATTCGCTTCTTCATGT
GTGTGTTTTGTTTTGTTTTTTGCCCTCCCCGCGCGATTGGTTCGTTCAGT
ACACGATGACCATGCTGGACGACACCGCCCCAGTGGTGAGAGCGACGGCT
GTGCGGTCCCTGCGGGCGTTGCTTGGCATGGTGACCTCCTTCCCCCCCAG
CGACTCCAACATCTTCCTGCTCTACATCTTCCCCGCGCTCCAGGTAGTGA
CTGCACCGTGGAGAGAACCTTTTTTTTTTGGGGGGGGGGTTATCATGCAC
TTTGGGGGAGTGGGAGTGATGCGACAAGTGCTAGTCGTAAAGGGTGTTGG
CTTGTTTTGACATATCGTTGCTGTGGTGGCTACATTAGTGTGTTGTGTGG
AAAAAACGGGTACGCACTTTGAGAGGTGATGGAAAACTGTGGTACTATTC
ACTGCTTGTCGTCAACCCACCAGGCTGTGCATGGGCCCCTCCATAGCGCC
CCGACCTACTTGTGCATACATCGCGCGCCGTAAAGGTCCGCTGCATTAAT
TCAACTCGGTTCGATACTTCCGACACCACCGTGCATCGTTTCTTCATGCG
AATTATCGGTTCGATTTTGAACCTCGATACAAACAACACGCCTCATATTT
TTTTCATTTTTTGCACTGCAACATGCCGCCTGATGCTTTTTTTCTTTTTT
ACTCGGCCAATCAGCGCCTTCCGTCGGACTCGTCGGACCTGGTCCGCATC
GCCTTCGCCGAGAGCCTGGCGTCCCTTGCCGAGACCAGCAGGAGGTTCTT
GGAGACAGCGTACGCCATGCGCCGGGCCGCCGCGGCCTCCGCCGCCGCAG
TGTCGGCGTCTGCAGCGGCGGCCGCGGCTGCTACGGCTGCGGCTACGGCT
GCGGCGGCGGTGGCGACCGGGGCGGGTGAGTCCGGGTCAGCCCCGACTGA
AGGCCGTCGCCAGGTGGGTTGTGCTTCATGGCTGTGTTTTTCGTGATGCG
AGTGGGAAGCTTTTGACAGTTTGCGACGTTGTGCGTTTTGTTTTTGGGGC
GCGCTGCTTTCGTTTGGGGTGGCATTTCAAGCATTTCTGGCGTAACTGCT
GCTGCTGCCCTTGCCCATGTTGTTGTTGTTGCTGCTGCTGCAGTTGTCCT
TGTCGTTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTGCTATGCGTTGCTC
TGGTGTTGCGTAGTCCCCGCTCAACCAGCGAGTGATTGCCATACGTTGAC
ACCCTCCCCCCCGTCCTCCCACGGTCCACTCTCTTCCCCCCGAAAGACCT
CGACGGACACAGCCAGCACCACCGACAGCGGCAACAAACGCGGCAGCAAC
AGCAGCAGCAACAGCAGCAGCAGCGGCAATGCGGGCGACCAGAACGACCC
ACCGGATTCACAAGAACCCACGCCAAGCCGGCCGGCCGGCGATGACACGC
CGGCGGAGCCCCGGGAGGGGGAAGATGCCAACAACAACGACGGAGCCCCC
GGTGCCGGTGGCAAGCCAGAACCGGAGATTTCGGAGAATGACGGGACGGC
GGAGGCGGGGACGAGCGGGGGCGGTGGGGCGGGGATCGGGAGCAATCCGG
GGACTGTTCTGCTGGACGGAAGCTACGACAAAGAGCTCTCGTCGATCCGC
GGGCAGGTGGGGAGGGTGACGGAGTAAAGCAGACGCCCTGGCGTGAACCA
GTTTGTGTTTTATTTCCCCGCCGATTCGACGGTTACTTGCTGCGTGTTTG
CCTTCGTTCTGTGGTACGGCCAGTCGGTCTTTGTCTGCGTGCGCGTAGAG
ATCCAAAGACGAGCAACACGATGTTTTGTTGGTTTGCGTTGGCTCTGATC
CAAGTTCGTGCTCGAACGCACGCCACGACACGGCAGTAACCACGCATATG
CATACAATACATACATGCATACATATAATCAAAGCAAGACTTTGGACTGC
ATACATATAATCAAAGCAAGACTTTGGACAATACCCGTTCGAGATATAGA
TGTATCCACGGTCGAAGGGGATGAGCTCAAGTATTTTCAGTGAATGGGCA
AAAAGAAAACGATTTCGTTGAGAAACGCGGTCTACACGCATCTATCGCAC
ACACCCTGATCGCAGATCAGCCGGTGGTTCGTTGTGCTCGCGTCGTCTAG
CGGGGCCGGGGGCCTCGCGGCCGACTGGAGCGGAGTTGGAATCGGCGGCG
GTGCTGGCGGGGACGGCGGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12480:8..3927-

>mRNA_E-fasciculatus_F_contig12480.1910.1 ID=mRNA_E-fasciculatus_F_contig12480.1910.1|Name=mRNA_E-fasciculatus_F_contig12480.1910.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2712bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12480:8..3927- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGGGGGTGATGGCAACGGGGACCCCGCGGACGGCGGCAGTAGAGAGCG
GAAGCGGCGCAGCGGCGGCGGCGGTGGGAGAGGGCAAGCGGCCGGTGAGG
GGAGCGGGGGAGGAGCTGAGCTCACGGAGTTGATGGAGAGAACGAGGGTG
GGGGTGATGGCAACGGGGACCCCGCGGACGGCGGCAGTAGAGAGCGGAAG
CGGCGCAGCGGCGGCGGCGGTGGGAGAGGGCAAGCGGCCGGTGAGGGGAG
CGGGGGAGGAGCTGAGCTCACGGAGTTGATGGAGAGAACGAGGTCTCTCA
TCGCCCGCGTGGAAGCTCTCGGCGTCGGCAACCCCCGCCCCTCTTCCAGC
GGCACGGCACGACCATCGCCGCGTTCCGCCGCACCCTCGACGGACGAACA
TCCGGCCGGGGAAGCGGCGGCCGCTGTTCCAGGTCCTCGAGAAGGGGAGG
CTTCTAGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGGC
GGTTCATTGATCATCCTGGTGCAGGTGGTGTGCTCGTGCCTCAGGCACCT
GCGTTACCCGCGGAGTCGGCTCCTGGGGCTGAACCTCCTCGTGGCGTTCG
GGCGGTGTTGCGACGACGAGGCGAGGCTGCAGCGGCTAGTGCCGGTCTCT
CATCGCCCGCGTGGAAGCTCTCGGCGTCGGCAACCCCCGCCCCTCTTCCA
GCGGCACGGCACGACCATCGCCGCGTTCCGCCGCACCCTCGACGGACGAA
CATCCGGCCGGGGAAGCGGCGGCCGCTGTTCCAGGTCCTCGAGAAGGGGA
GGCTTCTAGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGATG
GCGGTTCATTGATCATCCTGGTGCAGGTGGTGTGCTCGTGCCTCAGGCAC
CTGCGTTACCCGCGGAGTCGGCTCCTGGGGCTGAACCTCCTCGTGGCGTT
CGGGCGGTGTTGCGACGACGAGGCGAGGCTGCAGCGGCTAGTGCCGTACA
CGATGACCATGCTGGACGACACCGCCCCAGTGGTGAGAGCGACGGCTGTG
CGGTCCCTGCGGGCGTTGCTTGGCATGGTGACCTCCTTCCCCCCCAGCGA
CTCCAACATCTTCCTGCTCTACATCTTCCCCGCGCTCCAGTACACGATGA
CCATGCTGGACGACACCGCCCCAGTGGTGAGAGCGACGGCTGTGCGGTCC
CTGCGGGCGTTGCTTGGCATGGTGACCTCCTTCCCCCCCAGCGACTCCAA
CATCTTCCTGCTCTACATCTTCCCCGCGCTCCAGCGCCTTCCGTCGGACT
CGTCGGACCTGGTCCGCATCGCCTTCGCCGAGAGCCTGGCGTCCCTTGCC
GAGACCAGCAGGAGGTTCTTGGAGACAGCGTACGCCATGCGCCGGGCCGC
CGCGGCCTCCGCCGCCGCAGTGTCGGCGTCTGCAGCGGCGGCCGCGGCTG
CTACGGCTGCGGCTACGGCTGCGGCGGCGGTGGCGACCGGGGCGGGTGAG
TCCGGGTCAGCCCCGACTGAAGGCCGTCGCCAGCGCCTTCCGTCGGACTC
GTCGGACCTGGTCCGCATCGCCTTCGCCGAGAGCCTGGCGTCCCTTGCCG
AGACCAGCAGGAGGTTCTTGGAGACAGCGTACGCCATGCGCCGGGCCGCC
GCGGCCTCCGCCGCCGCAGTGTCGGCGTCTGCAGCGGCGGCCGCGGCTGC
TACGGCTGCGGCTACGGCTGCGGCGGCGGTGGCGACCGGGGCGGGTGAGT
CCGGGTCAGCCCCGACTGAAGGCCGTCGCCAGACCTCGACGGACACAGCC
AGCACCACCGACAGCGGCAACAAACGCGGCAGCAACAGCAGCAGCAACAG
CAGCAGCAGCGGCAATGCGGGCGACCAGAACGACCCACCGGATTCACAAG
AACCCACGCCAAGCCGGCCGGCCGGCGATGACACGCCGGCGGAGCCCCGG
GAGGGGGAAGATGCCAACAACAACGACGGAGCCCCCGGTGCCGGTGGCAA
GCCAGAACCGGAGATTTCGGAGAATGACGGGACGGCGGAGGCGGGGACGA
GCGGGGGCGGTGGGGCGGGGATCGGGAGCAATCCGGGGACTGTTCTGCTG
GACGGAAGCTACGACAAAGAGCTCTCGTCGATCCGCGGGCAGACCTCGAC
GGACACAGCCAGCACCACCGACAGCGGCAACAAACGCGGCAGCAACAGCA
GCAGCAACAGCAGCAGCAGCGGCAATGCGGGCGACCAGAACGACCCACCG
GATTCACAAGAACCCACGCCAAGCCGGCCGGCCGGCGATGACACGCCGGC
GGAGCCCCGGGAGGGGGAAGATGCCAACAACAACGACGGAGCCCCCGGTG
CCGGTGGCAAGCCAGAACCGGAGATTTCGGAGAATGACGGGACGGCGGAG
GCGGGGACGAGCGGGGGCGGTGGGGCGGGGATCGGGAGCAATCCGGGGAC
TGTTCTGCTGGACGGAAGCTACGACAAAGAGCTCTCGTCGATCCGCGGGC
AGATCAGCCGGTGGTTCGTTGTGCTCGCGTCGTCTAGCGGGGCCGGGGGC
CTCGCGGCCGACTGGAGCGGAGTTGGAATCGGCGGCGGTGCTGGCGGGGA
CGGCGGAATCAGCCGGTGGTTCGTTGTGCTCGCGTCGTCTAGCGGGGCCG
GGGGCCTCGCGGCCGACTGGAGCGGAGTTGGAATCGGCGGCGGTGCTGGC
GGGGACGGCGGA
back to top