mRNA_E-fasciculatus_F_contig1248.1909.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1248.1909.1
Unique NamemRNA_E-fasciculatus_F_contig1248.1909.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1248.1909.1 vs. uniprot
Match: D8LRN9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN9_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 1.080e-76
Identity = 122/130 (93.85%), Postives = 127/130 (97.69%), Query Frame = 2 
Query:    2 GVWVTGTAFVNRQTDLVEAFADEMTYHIGDEKEMELCIKEYKGKLGPGLYREAMFKECMLAVGRKKAVTLETVRSIKFIFKQFRLSPVKGVKLVVSATRQTDRSQSNVRSKLLFLGGLVAEGDSKALQAL 391
            GVWVTGTAFVNRQTDLVEAFADEMTYHIGDEKEMELCIKEYKGKLGP +YREAMFKECMLAVGRKKAVTLETVRSIKFIFKQFRLSP+KGVKLVV+ATR+TDRSQSNVRSKLLFLGGLVAEGD KA +AL
Sbjct:  165 GVWVTGTAFVNRQTDLVEAFADEMTYHIGDEKEMELCIKEYKGKLGPAMYREAMFKECMLAVGRKKAVTLETVRSIKFIFKQFRLSPLKGVKLVVAATRRTDRSQSNVRSKLLFLGGLVAEGDIKAQEAL 294
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BLAST of mRNA_E-fasciculatus_F_contig1248.1909.1 vs. uniprot
Match: A0A7S1BUB6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUB6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.480e-10
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:   29 VNRQTDLVEAFADEMTYHIGDEKEMELCIKEYKGKLGPGLYREAMFKECMLAVGRKKAVTLETVRSIKFIFKQFRLSPVKGVKLVVSATRQTDRSQSNVRSKLLFLGGLVAEGDSKALQAL 391
            V +Q + +  FA EM YH G+E+E+ LC+KEYK KL  G  R  M    +    + K V+L T+ ++  +F   +L  V   K +V+A     +S+ + RSK LF G  + +   +AL AL
Sbjct:   58 VLKQNEAIRDFAVEMAYHDGNERELVLCLKEYKKKLPRGR-RNDMIDNYLAEYFKVKTVSLNTITNLASVFTLLKLDEVSAAKRLVAAGELL-KSKPSSRSKCLFFGDRILKSP-EALDAL 175
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BLAST of mRNA_E-fasciculatus_F_contig1248.1909.1 vs. uniprot
Match: A0A7S1BST3_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BST3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.090e-10
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:   29 VNRQTDLVEAFADEMTYHIGDEKEMELCIKEYKGKLGPGLYREAMFKECMLAVGRKKAVTLETVRSIKFIFKQFRLSPVKGVKLVVSATRQTDRSQSNVRSKLLFLGGLVAEGDSKALQAL 391
            V +Q + +  FA EM YH G+E+E+ LC+KEYK KL  G  R  M    +    + K V+L T+ ++  +F   +L  V   K +V+A     +S+ + RSK LF G  + +   +AL AL
Sbjct:  194 VLKQNEAIRDFAVEMAYHDGNERELVLCLKEYKKKLPRGR-RNDMIDNYLAEYFKVKTVSLNTITNLASVFTLLKLDEVSAAKRLVAAGELL-KSKPSSRSKCLFFGDRILKSP-EALDAL 311
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1248.1909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRN9_ECTSI1.080e-7693.85Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S1BUB6_9STRA3.480e-1035.54Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BST3_9STRA4.090e-1035.54Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1248contigE-fasciculatus_F_contig1248:17405..18950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size395
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1248.1909.1prot_E-fasciculatus_F_contig1248.1909.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1248 17405..18949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927754.6667461-CDS-E-fasciculatus_F_contig1248:17404..175731622927754.6667461-CDS-E-fasciculatus_F_contig1248:17404..17573Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 17405..17573 +
1695995680.4586682-CDS-E-fasciculatus_F_contig1248:17404..175731695995680.4586682-CDS-E-fasciculatus_F_contig1248:17404..17573Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 17405..17573 +
1622927754.6795883-CDS-E-fasciculatus_F_contig1248:18267..183661622927754.6795883-CDS-E-fasciculatus_F_contig1248:18267..18366Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 18268..18366 +
1695995680.4672089-CDS-E-fasciculatus_F_contig1248:18267..183661695995680.4672089-CDS-E-fasciculatus_F_contig1248:18267..18366Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 18268..18366 +
1622927754.690355-CDS-E-fasciculatus_F_contig1248:18824..189491622927754.690355-CDS-E-fasciculatus_F_contig1248:18824..18949Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 18825..18949 +
1695995680.480672-CDS-E-fasciculatus_F_contig1248:18824..189491695995680.480672-CDS-E-fasciculatus_F_contig1248:18824..18949Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1248 18825..18949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1248.1909.1

>prot_E-fasciculatus_F_contig1248.1909.1 ID=prot_E-fasciculatus_F_contig1248.1909.1|Name=mRNA_E-fasciculatus_F_contig1248.1909.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp
RGVGNWNGVREPADGSSGGLCGRDDLPHWRREGDGALYQGVQGEAGPRTV
PRSHVQGVHARCWPEESRDPGDREVDQVHFQAVPTLPGEGGEAGSVGDKT
NGQVPVERAVQAAVPGGAGGRGRQQGPAGVG
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mRNA from alignment at E-fasciculatus_F_contig1248:17405..18950+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1248.1909.1 ID=mRNA_E-fasciculatus_F_contig1248.1909.1|Name=mRNA_E-fasciculatus_F_contig1248.1909.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1248:17405..18950+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGGGTGTGGGTAACTGGAACGGCGTTCGTGAACCGGCAGACGGATCTAG
TGGAGGCCTTTGCGGACGAGATGACTTACCACATTGGCGACGAGAAGGAG
ATGGAGCTTTGTATCAAGGAGTACAAGGGGAAGCTGGGCCCCGGACTGTA
CCGAGAAGCCATGTTCAAGGTATCGTATGCATACGTACGGTACGTACGGT
AGGGATTGCTTTGTGACCCAGAGGAAGAGAGGTATCTGAATGGTAATGGT
ATGTTAGATCGTGCGATGTTTTGGTGTGGCTGAGGGATGCATTTGGTTGG
GTACAGGTGTCGGTAGAGCATGGCTTGTGATACCATTTGGGGCGGGCGGG
TATTGCGGAGGGGCCGAAGCTCCGACCAAAGCCGAGCAAAGGGAACGTTG
CTGCTCTTTCATGTGGAACAGAAGGGACGTCCGTGAAGCGAGTTGTGATT
GCCCGTCCAATCGTCTAACACCGCAAGGAGGGACGGCCACAGCTTGAGAT
GTTGGACCTTTGTGTGAACCCCCAGTGCTCTCTCCAGTTTAACGAGAGTA
GTCATTCACACCCGCAGTGCACATCATAGTGTACCCTAGGAATCCATCTA
GATATGGAGTAGTTGTGCCTCGGTGCAGCGTGGACGGGATAGTTCCGTTC
GCAATCTCGATTGCGGAGTTGTACCGCGTACAATCCTGAAACACGCCCCT
CGAAAGGTTTTCACCTTGTGTTCTTTGTGGAAATTTTGATTTTCACGTCA
TTGCCACCACGTGTCCAGACGGGCTTGTACAAGTATGGTGGTCGTAGGGG
AACCAGGCAGGCGACCCCATTTCTCCTCGCCTTCTCACTTTTTTGTTTAT
CTTTGCTTTGCAGGAGTGCATGCTCGCTGTTGGCCGGAAGAAAGCCGTGA
CCCTGGAGACCGTGAGGTCGATCAAGTTCATTTTCAAGCAGTTCCGACTC
TCCCCGGTGAAGGTGAGACAGACGCAACGGCACTACAAAGCCGGGAACGA
AATGCATACAGCACAACGTGCAGATGCACAGAATGGTTGTACACGTGTTG
CATGATCATCTGATGCGGCATGCGAACTTGGGACATGACGATGACGCACG
GGGCGAGGCAATCGAATGTTGGTGTTCTCGCACCATTCATTCTTGCTCTT
GCTTGACGACAAGCTTGGCGACAAGCTTGGCGACAAGCTTGGCGAACTGA
TGGCAAGCCGGGGAACGGGGATGCTGCTGGTGCATCTAGTCGTTCAAGGT
TGTTCAATCAGACATTGTTGCTGCTGGGGGTGGCGTGGGAGCCCTTTGAG
AACGCTAGAAAAAACTGCAAAAGATGGATCCAAGACACAGGTATGTACCT
CACCCACCTCCCCCCCCGAATAAGTTAATCGACTCTTTGCTGCGTTTTTG
TGCATGGTTTGTTTGGGCAGGGGGTGAAGCTGGTAGTGTCGGCGACAAGA
CAAACGGACAGGTCCCAGTCGAACGTGCGGTCCAAGCTGCTGTTCCTGGG
GGGGCTGGTGGCCGAGGGAGACAGCAAGGCCCTGCAGGCGTTGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1248:17405..18950+

>mRNA_E-fasciculatus_F_contig1248.1909.1 ID=mRNA_E-fasciculatus_F_contig1248.1909.1|Name=mRNA_E-fasciculatus_F_contig1248.1909.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1248:17405..18950+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGGGTGTGGGTAACTGGAACGGCGTTCGTGAACCGGCAGACGGATCTAG
TGGAGGCCTTTGCGGACGAGATGACTTACCACATTGGCGACGAGAAGGAG
ATGGAGCTTTGTATCAAGGAGTACAAGGGGAAGCTGGGCCCCGGACTGTA
CCGAGAAGCCATGTTCAAGCGGGGTGTGGGTAACTGGAACGGCGTTCGTG
AACCGGCAGACGGATCTAGTGGAGGCCTTTGCGGACGAGATGACTTACCA
CATTGGCGACGAGAAGGAGATGGAGCTTTGTATCAAGGAGTACAAGGGGA
AGCTGGGCCCCGGACTGTACCGAGAAGCCATGTTCAAGGAGTGCATGCTC
GCTGTTGGCCGGAAGAAAGCCGTGACCCTGGAGACCGTGAGGTCGATCAA
GTTCATTTTCAAGCAGTTCCGACTCTCCCCGGTGAAGGAGTGCATGCTCG
CTGTTGGCCGGAAGAAAGCCGTGACCCTGGAGACCGTGAGGTCGATCAAG
TTCATTTTCAAGCAGTTCCGACTCTCCCCGGTGAAGGGGGTGAAGCTGGT
AGTGTCGGCGACAAGACAAACGGACAGGTCCCAGTCGAACGTGCGGTCCA
AGCTGCTGTTCCTGGGGGGGCTGGTGGCCGAGGGAGACAGCAAGGCCCTG
CAGGCGTTGGAGGGGTGAAGCTGGTAGTGTCGGCGACAAGACAAACGGAC
AGGTCCCAGTCGAACGTGCGGTCCAAGCTGCTGTTCCTGGGGGGGCTGGT
GGCCGAGGGAGACAGCAAGGCCCTGCAGGCGTTGGA
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