mRNA_E-fasciculatus_F_contig12476.1904.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig12476.1904.1
Unique Name	mRNA_E-fasciculatus_F_contig12476.1904.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig12476.1904.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 529 bits (1362), Expect = 1.340e-161
Identity = 506/773 (65.46%), Postives = 526/773 (68.05%), Query Frame = 1

Query:    1 LSLSRRDALRKGGDQRKHQMILAPQVPDEPPTAGAFDGPFPVVNGFDELVVSRPKSSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAIPSPPLRSFAQHXXXXXXXXXXXXXXXEVDLNASRGKEGDGAATXXXXXXXXXXXXXXXXXXXSISQEMEHAAEEXRNPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGRTRSTSGDGGVGAKGRAKREERSSLRLSDARGSFIGGSTPTKGAAAAAGTGRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFNYVRRRASASEGEEEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXXXPGSSTSLR---VGAKNDPVQENEALPPXXXXGAGTGA--AVVRAGQSAGESALEEEQPRSSELTVGEGTAPP-SSSVGGVDRRAEGIPQGRAAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGWGSVRERVAALSAKTGGGXXXXXXXXXXXXXXKNKVRTFTSGSRKLWQDGSXXXXXXXXXXXXXXXXXXXXXXXPRRPSLALRVSSNTAVDEFDAAVSQAGKKVARTWPPVQSKATETTVPXXXXXXXXXXLNGEEAPSIDGLTEAGPTAGASKDAAPAVEPAXXXXXXXXXXXXXXAIEXXXXXXPVVPPESDPSRREPGTP---SVGSGKRSSGGGSVSVGDSAPACGRQESSSDD-SDEEGGYEPVLAPLSLVDWSHEPLLALCDCDLPQPREWTLADIGKE 2289
            L  +RRDALRKGGD RKHQMILAPQVPDEPPTAGAFDGPFPVV+GFDE+VVSRPKSSDA                             FAIPSPPLRSFAQH  XXXXXX       EVDL+ASRGKEGDG          XXXXXXXXXXXX             R+          XXXXXXXXXXXXXXXXXXXXXXXXXXXX                AKGRAKREERS LRLSDARGSFIG STP K   AA G                 XXXXXXXXXXXXXXXXX  SFNYVRRR SASE E EVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXX     + SLR   VGA +DPVQ  E LP  XXX        AVVRAGQSAGESALEEEQPRSSELTVGEGTAPP SSS+GG DRR EGIPQGRAAALA         XXXXX     XXXXXX       GWGSVRERVAALSAK+G G   XXXXXXXXX  KNKVRTFTSGSRK W +GS XXXXX                 P RPSLALRVSSNTA+DEFDAAVSQAGKK++R WPPV+SKAT+ T P XXXXXXXXX   E+APS+ G   AG TAGASKDAAP VEPA              AIE      P     + PSRRE G P   SVGSGKRSSGGGSVSV D APA GRQESSS+   D+EG YEPVLAPLSLVDWSHEPL AL D DLPQPREWTLADIGKE
Sbjct:  927 LDKARRDALRKGGDHRKHQMILAPQVPDEPPTAGAFDGPFPVVHGFDEVVVSRPKSSDAPAAAAGAAGTDAARGAARLVGGTALPPPAFAIPSPPLRSFAQHGGXXXXXXRGEEE--EVDLSASRGKEGDGTGNRAGGSRDXXXXXXXXXXXXXXXXXXXXXXXXERHTPSSGGDATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXAKGRAKREERSGLRLSDARGSFIGSSTPIKDEMAAEGE----------------XXXXXXXXXXXXXXXXXASSFNYVRRRTSASE-EGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXSEE-RARSLRGSDVGANSDPVQGKETLPATXXXXXXXXXXXAVVRAGQSAGESALEEEQPRSSELTVGEGTAPPPSSSLGGADRRPEGIPQGRAAALAAAFERRNTGXXXXXGSSVKXXXXXXASGA---GWGSVRERVAALSAKSGEGATGXXXXXXXXX--KNKVRTFTSGSRKRWHEGSGXXXXXDDSSTP-----------PLRPSLALRVSSNTAIDEFDAAVSQAGKKLSRAWPPVRSKATDLTTPPXXXXXXXXXXXXEDAPSLGGPAGAGTTAGASKDAAPTVEPAATATRPAAAE----AIEEEEAVEPDAV-AAGPSRRESGAPPNPSVGSGKRSSGGGSVSVEDGAPAHGRQESSSEAFDDDEGYYEPVLAPLSLVDWSHEPLFALGDWDLPQPREWTLADIGKE 1652

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BLAST of mRNA_E-fasciculatus_F_contig12476.1904.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 1.040e-105
Identity = 468/777 (60.23%), Postives = 490/777 (63.06%), Query Frame = 1

Query:    1 LSLSRRDALRKGGDQRKHQMILAPQVPDEPPTAGAFDGPFPVVNGFDELVVSRPKSSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---FAIPSPPLRSFAQHXXXXXXXXXXXXXXXEVDLNASRGKEGDGAATXXXXXXXXXXXXXXXXXXXSISQEMEHAAEEXRNPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGG-RTRSTSGDGGVGAKGRAKREERSSLRLSDARGSFIGGSTPTKGAAAAAGTGRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFN------YVRRRASASEGEEEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXXXPGSSTSLR---VGAKNDPVQENEALPPXXXXGAGTGAAVVRAGQSAGESALEEEQPRSSELTVGEGTAPPSSSVGGVDRRAEGIPQGRAAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGWGSVRERVAALSAKTGGGXXXXXXXXXXXXXXKNKVRTFTSGSRKLWQDGSXXXXXXXXXXXXXXXXXXXXXXXPRRPSLALRVSSNTAVDEFDAAVSQAGKKVARTWPPVQSKATETTVPXXXXXXXXXXLNGEEAPSIDGLTEAGPTAGASKDAAPAVEPAXXXXXXXXXXXXXXAIEXXXXXXPVVPPESDPSRREPGTPSVGSGKRSSGGGSVSVGDSAPACGRQESSSDDSDE-EGGYEPVLAPLSLVDWSHEPLLALCDCDLPQPREWTLADIGKE 2289
            L  +RRDALRKGGD RKHQMILAPQVPDEPPTAGAFDGPFPVVNGFDE VVSRPKSSDA                                FAIPSPPL SFAQHXXXXXXXXXXXXX    DLNASRG        XXXXXXXXXXXXXXXXXXX              +P                XXXX                 S GG R R+TSG+G  G KGR K+EERS LRLSDARGSFIG S P K A          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         +V    SAS+ EEEVCYDSAGDWASDGSDGLPAVLAN+      XXXXXXXXXXXXXX      + S +   V A +DPVQE E+LP     G    AAVVRAGQSAGESALEEEQPRSSELTVGEGTAP                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GWG VRERVAALSAK+G G   XXXXXXXX   KNKVRTFTSGSRKL QDGSXXXXXXXXXXXXXX          RRPSLAL VSSNTA+DEFDAAVS+A  K++R WPP    AT+ T P          LN EEAPS  G   A  TA ASKDA P V+PA XXXXXXXXXXXXX   XXXXXX                 SVG                          S+D D+ EG YEPVLAPLSLVDWS+EPLLAL DCDLPQPREWTLADIGKE
Sbjct:  965 LDKARRDALRKGGDHRKHQMILAPQVPDEPPTAGAFDGPFPVVNGFDEAVVSRPKSSDAPTAAAAGAAGTDAATLGGEARLVGGATLPPPAFAIPSPPLSSFAQHXXXXXXXXXXXXX---XDLNASRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHTPSP-----------GGDATXXXXGNGLGVTGAAAAVPRRKSDGGWRARATSGEGS-GTKGRGKQEERSGLRLSDARGSFIGSSAPIKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVXXXXSASQ-EEEVCYDSAGDWASDGSDGLPAVLANQRRSATAXXXXXXXXXXXXXXWGSEERARSWKGSDVDANSDPVQEKESLPAAAAAGGEAEAAVVRAGQSAGESALEEEQPRSSELTVGEGTAPXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGWGLVRERVAALSAKSGDGATGXXXXXXXXG--KNKVRTFTSGSRKLRQDGSXXXXXXXXXXXXXX----------RRPSLALHVSSNTAIDEFDAAVSRADNKLSRAWPP----ATDLTTPTSSAAPAA--LNEEEAPSFGGPAGARTTAEASKDAPPTVQPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XLSVGXXXXXXXXXXXXXXXXXXXXXXXXXXSEDYDDYEGYYEPVLAPLSLVDWSYEPLLALGDCDLPQPREWTLADIGKE 1703

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig12476.1904.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig12476.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LB83_ECTSI	1.340e-161	65.46	WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu...	[more]
A0A6H5KB05_9PHAE	1.040e-105	60.23	UDENN domain-containing protein n=1 Tax=Ectocarpus...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig12476	contig	E-fasciculatus_F_contig12476:303..3982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	539.7
Seed ortholog evalue	2.3e-150
Seed eggNOG ortholog	2880.D8LB83
Preferred name	SCD1
KEGG ko	ko:K03361,ko:K20164
KEGG Pathway	ko04111,ko04120,map04111,map04120
KEGG Module	M00407
GOs	GO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.	Rab guanyl-nucleotide exchange factor activity
EggNOG OGs	KOG0274@1,KOG0274@2759,KOG2127@1,KOG2127@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko04121,ko04131
Hectar predicted targeting category	other localisation
Exons	4
Model size	2289
Cds size	2289
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig12476.1904.1	prot_E-fasciculatus_F_contig12476.1904.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig12476 303..3982 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927754.5675664-CDS-E-fasciculatus_F_contig12476:302..435	1622927754.5675664-CDS-E-fasciculatus_F_contig12476:302..435	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12476 303..435 +
1695995680.3918147-CDS-E-fasciculatus_F_contig12476:302..435	1695995680.3918147-CDS-E-fasciculatus_F_contig12476:302..435	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12476 303..435 +
1622927754.5771432-CDS-E-fasciculatus_F_contig12476:1016..2671	1622927754.5771432-CDS-E-fasciculatus_F_contig12476:1016..2671	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12476 1017..2671 +
1695995680.4150302-CDS-E-fasciculatus_F_contig12476:1016..2671	1695995680.4150302-CDS-E-fasciculatus_F_contig12476:1016..2671	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12476 1017..2671 +
1622927754.5861068-CDS-E-fasciculatus_F_contig12476:2993..3331	1622927754.5861068-CDS-E-fasciculatus_F_contig12476:2993..3331	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12476 2994..3331 +
1695995680.426972-CDS-E-fasciculatus_F_contig12476:2993..3331	1695995680.426972-CDS-E-fasciculatus_F_contig12476:2993..3331	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12476 2994..3331 +
1622927754.5956302-CDS-E-fasciculatus_F_contig12476:3819..3982	1622927754.5956302-CDS-E-fasciculatus_F_contig12476:3819..3982	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12476 3820..3982 +
1695995680.4385087-CDS-E-fasciculatus_F_contig12476:3819..3982	1695995680.4385087-CDS-E-fasciculatus_F_contig12476:3819..3982	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12476 3820..3982 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig12476:303..3982+
coding sequence from alignment at E-fasciculatus_F_contig12476:303..3982+

protein sequence of mRNA_E-fasciculatus_F_contig12476.1904.1

>prot_E-fasciculatus_F_contig12476.1904.1 ID=prot_E-fasciculatus_F_contig12476.1904.1|Name=mRNA_E-fasciculatus_F_contig12476.1904.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=763bp
LSLSRRDALRKGGDQRKHQMILAPQVPDEPPTAGAFDGPFPVVNGFDELV
VSRPKSSDAAAAAAGALGTDAAAAAARLVGGAALPPPAFAIPSPPLRSFA
QHGGDDDDDGRQGDDEEEVDLNASRGKEGDGAATAAAGNASGAGGDGGGS
GAGSISQEMEHAAEEERNPLPPPSGGGDAAAVAAGNSLGVTGAAVTRRKS
DGGGGGSRGGRTRSTSGDGGVGAKGRAKREERSSLRLSDARGSFIGGSTP
TKGAAAAAGTGRVEEQDEMAAEGEEAEDKGGGGGGGLRRRGSGASSFNYV
RRRASASEGEEEVCYDSAGDWASDGSDGLPAVLANRRRSAATDDEAAAAA
VAAGGSEERPGSSTSLRVGAKNDPVQENEALPPPPPAGAGTGAAVVRAGQ
SAGESALEEEQPRSSELTVGEGTAPPSSSVGGVDRRAEGIPQGRAAALAA
AFERKTTSGGGSGGGGVKGGGAGGAGGGSSPGWGSVRERVAALSAKTGGG
ATGGGAGGGSSGGGKNKVRTFTSGSRKLWQDGSSGGGGGGGDSGGGDGGE
DETSTPPRRPSLALRVSSNTAVDEFDAAVSQAGKKVARTWPPVQSKATET
TVPPSAAAAAAAALNGEEAPSIDGLTEAGPTAGASKDAAPAVEPAAAAAA
AATARAGAEAIEEEEAAAPVVPPESDPSRREPGTPSVGSGKRSSGGGSVS
VGDSAPACGRQESSSDDSDEEGGYEPVLAPLSLVDWSHEPLLALCDCDLP
QPREWTLADIGKE

mRNA from alignment at E-fasciculatus_F_contig12476:303..3982+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig12476.1904.1 ID=mRNA_E-fasciculatus_F_contig12476.1904.1|Name=mRNA_E-fasciculatus_F_contig12476.1904.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3680bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12476:303..3982+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTCCCTCTCTCGCAGAGACGCGCTGAGGAAGGGAGGAGACCAACGGAA
GCACCAGATGATCCTAGCGCCGCAAGTACCGGACGAGCCGCCAACCGCCG
GGGCGTTCGACGGGCCCTTTCCTGTCGTGAACGGTGAGTGGTCGGGTTTG
CAGAGGTATCTATCGGGAGGAAGGGGACAGGCGACGACCAGCACCCTGGA
TGGGGAAGATGACCCCCCGCCCCCCCGCGCGCCTCGACGTTGGCATTTGG
ACGGGAGTCGGAACTGCTGCTGCTGTGTTGTGACCGGCTTGCCCTCGATT
TCCGCACGTTTCGTCTCGAAAAAAAAAAACGTGGTGTAGGCTGTCCACAA
TGTGCCGTGTGCCACAATCAGTCCAGCGTCTGTTCTCGACAGCAGTATTT
GTCCAAGAGCGACGGTATGCATAGAAGTATCACCGAACGCCCCCGGTTAC
GAGGTCACCCCTTGACGGCGACTGGGCCGCCGTAATAAGAGCAGTCCCTC
CACTGGATCACCCGAAGACCGACCGACCGACCGACCGACCGCTCGTGTGG
AGTGCCCTTTCTTTTGTGAGCGGCGAGACCTCCTACCGTGCAACCCCCCG
GCGTGCTTAGCGCCGGCGTTGATGATTGTTGCCGGCAGGATCGATCACCC
CGAGGTCCTGCTCAAATTGATTAATCTCTCAATCACGGCAAATGACACCA
ACCTGTCTGTGCAGGCTTTGATGAACTCGTCGTTTCCCGGCCGAAGAGCT
CTGACGCTGCTGCCGCCGCCGCCGGGGCATTGGGAACGGACGCGGCGGCG
GCGGCGGCCCGGTTGGTCGGCGGCGCCGCCCTCCCCCCACCGGCGTTCGC
CATCCCGTCACCACCTCTTAGATCGTTCGCCCAGCACGGAGGAGACGATG
ACGACGATGGCAGACAAGGAGACGACGAAGAAGAAGTAGACCTGAACGCC
AGCAGGGGGAAAGAAGGGGACGGAGCCGCCACCGCCGCCGCCGGAAACGC
GAGCGGCGCAGGAGGGGACGGCGGGGGTAGCGGCGCCGGCAGCATTTCGC
AGGAAATGGAGCACGCCGCGGAAGAGGAGCGAAACCCTCTTCCTCCGCCA
TCGGGCGGCGGCGACGCCGCCGCTGTCGCCGCCGGGAACAGCTTGGGGGT
GACGGGGGCAGCGGTGACCCGGCGAAAAAGCGACGGCGGCGGGGGGGGAT
CGAGGGGCGGGCGCACGCGGTCGACGTCCGGGGACGGCGGCGTCGGGGCC
AAGGGGCGCGCGAAGCGGGAGGAAAGGTCGAGTTTGAGGTTGTCGGACGC
TCGCGGGAGCTTCATCGGGGGCAGTACACCGACCAAGGGTGCTGCTGCTG
CCGCAGGCACCGGCCGCGTGGAGGAGCAGGACGAGATGGCGGCCGAGGGG
GAGGAAGCTGAAGACAAGGGCGGCGGCGGAGGCGGGGGCCTGCGACGGCG
AGGCTCGGGCGCGTCGTCGTTCAACTACGTCAGAAGACGCGCCTCGGCAA
GCGAGGGGGAGGAGGAGGTGTGCTACGACTCGGCGGGGGATTGGGCTTCG
GACGGGAGCGACGGGTTGCCGGCGGTGCTTGCCAATCGGAGGAGGTCCGC
CGCGACGGACGACGAGGCGGCGGCTGCTGCGGTGGCGGCCGGGGGTAGCG
AAGAACGCCCCGGGTCATCGACGTCGTTGAGAGTCGGCGCGAAAAACGAC
CCGGTCCAGGAGAACGAAGCGCTGCCGCCGCCGCCGCCGGCGGGGGCGGG
GACGGGGGCGGCAGTTGTGAGAGCGGGTCAGAGCGCCGGGGAGAGCGCTC
TAGAGGAAGAGCAGCCCCGGTCATCGGAGCTTACGGTCGGAGAAGGAACG
GCGCCGCCGTCTTCGTCGGTCGGGGGGGTGGACAGACGAGCGGAAGGGAT
CCCGCAAGGGCGAGCGGCTGCGCTCGCCGCTGCTTTCGAGCGCAAAACTA
CTAGCGGAGGGGGGAGTGGCGGGGGCGGCGTTAAAGGTGGGGGCGCCGGA
GGCGCCGGCGGCGGCAGCAGTCCCGGGTGGGGTTCGGTTAGGGAGAGGGT
GGCGGCACTCTCGGCGAAGACCGGCGGGGGCGCCACCGGAGGCGGTGCCG
GCGGCGGCAGCAGCGGCGGCGGCAAGAACAAAGTGAGGACGTTCACATCG
GGGAGCAGGAAGCTGTGGCAAGATGGCAGCAGCGGCGGCGGCGGCGGCGG
CGGGGACAGCGGCGGCGGCGACGGTGGCGAGGATGAGACGTCCACTCCCC
CCCGGAGGCCGTCGCTAGCCTTGCGTGTCAGTTCGAACACGGCCGTCGAT
GAGTTCGATGCTGCTGTGTCTCAGGCCGGCAAGAAGGTAGCGAGGACATG
GCCGCCGGTGCAATCTAAGGTGAGCCTTTGACGGGGGGGAGGGAACCGGA
AACCATTGGGCGAGGAATTGTTGTTGTTTGATTCAAGCAAATGCTTTGTT
GAACATAATATCGAAAAGTGACTTGAAGACGTATACTTTCTGGAGAGGGT
AAGCGTTTGTGCAGCAACTCATTTCCGAAGGTTTTGGTCGCAAATACACT
GTACTCTTTCTTCACAAAGGTGTAATGTATATATTTACAACAGGGGCACC
ATCTTCCCCCGTTCACGCTGCTGCTGCTGTCGCCTTGAACCACCCACATA
TCCTCTCCCTCGTCGTGTATTTGTTTTTTTATTGTCGAAAGGCTACCGAG
ACCACGGTGCCACCATCTGCGGCGGCGGCTGCTGCTGCTGCCCTCAACGG
GGAAGAGGCGCCCTCGATTGATGGCCTGACAGAGGCGGGTCCAACGGCGG
GAGCGTCCAAGGACGCTGCCCCCGCCGTCGAACCTGCTGCTGCTGCTGCT
GCTGCTGCCACCGCGCGTGCAGGGGCCGAAGCAATAGAAGAGGAAGAAGC
GGCAGCGCCTGTGGTGCCGCCAGAGTCTGACCCGAGCCGGCGGGAACCGG
GGACCCCGTCTGTAGGGTCCGGGAAGCGATCGAGCGGCGGCGGTAGTGTG
TCTGTGGGGGATAGTGCTCCTGCTTGCGGGTGAGTTTCGCGATTTTGGGT
AAGTGTCAGGGTTAACCTATGTAGGCGTTCGTGGGGGAGGGCGGTGGAGG
CTGGCTGTGTTCGGCGGAGCTGAAGGTGTTTCCCGTCACCCTGTTTTTTT
GAAGTAGTGTCCAGGAAATGATAATCCCGTAACGCTTCTTTTTTTGTTGG
GATGGGTTTACCCCTCGGTTTTTGCTCCTTGGAGGTTGCTGTTGCTGCTG
CGTTGGTTGCGATGAGGTTGTCGCTGCGGTGCTCACCCGTCCTGTCTTAC
CCTGACCCACTTCTGCTGCTGCTGCTGCTGCCACCGCCGCTGTTCCCGTC
TCGTAAAAACGGCGACCAATCCACTGCATCTCAACCCAATCCACGCTATT
CACCACAGTTGCTGCAGTGCTCATCTGTCCACTCTTTACTCTTACCCCGG
CCCACTTGTGCTATGCTGCTCGTGTTGACGGTCAATCCACTGCAACCCAA
CCCAATCCACACTATAGTCGGCAGGAGAGCAGTAGCGACGACTCCGACGA
GGAGGGTGGCTACGAGCCGGTCCTAGCGCCGCTCTCATTGGTGGACTGGT
CGCACGAGCCGTTGCTCGCCCTATGCGATTGCGACTTGCCGCAGCCCAGG
GAGTGGACTCTAGCCGATATTGGCAAAGAG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12476:303..3982+

>mRNA_E-fasciculatus_F_contig12476.1904.1 ID=mRNA_E-fasciculatus_F_contig12476.1904.1|Name=mRNA_E-fasciculatus_F_contig12476.1904.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12476:303..3982+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTCCCTCTCTCGCAGAGACGCGCTGAGGAAGGGAGGAGACCAACGGAA
GCACCAGATGATCCTAGCGCCGCAAGTACCGGACGAGCCGCCAACCGCCG
GGGCGTTCGACGGGCCCTTTCCTGTCGTGAACGTTGTCCCTCTCTCGCAG
AGACGCGCTGAGGAAGGGAGGAGACCAACGGAAGCACCAGATGATCCTAG
CGCCGCAAGTACCGGACGAGCCGCCAACCGCCGGGGCGTTCGACGGGCCC
TTTCCTGTCGTGAACGGCTTTGATGAACTCGTCGTTTCCCGGCCGAAGAG
CTCTGACGCTGCTGCCGCCGCCGCCGGGGCATTGGGAACGGACGCGGCGG
CGGCGGCGGCCCGGTTGGTCGGCGGCGCCGCCCTCCCCCCACCGGCGTTC
GCCATCCCGTCACCACCTCTTAGATCGTTCGCCCAGCACGGAGGAGACGA
TGACGACGATGGCAGACAAGGAGACGACGAAGAAGAAGTAGACCTGAACG
CCAGCAGGGGGAAAGAAGGGGACGGAGCCGCCACCGCCGCCGCCGGAAAC
GCGAGCGGCGCAGGAGGGGACGGCGGGGGTAGCGGCGCCGGCAGCATTTC
GCAGGAAATGGAGCACGCCGCGGAAGAGGAGCGAAACCCTCTTCCTCCGC
CATCGGGCGGCGGCGACGCCGCCGCTGTCGCCGCCGGGAACAGCTTGGGG
GTGACGGGGGCAGCGGTGACCCGGCGAAAAAGCGACGGCGGCGGGGGGGG
ATCGAGGGGCGGGCGCACGCGGTCGACGTCCGGGGACGGCGGCGTCGGGG
CCAAGGGGCGCGCGAAGCGGGAGGAAAGGTCGAGTTTGAGGTTGTCGGAC
GCTCGCGGGAGCTTCATCGGGGGCAGTACACCGACCAAGGGTGCTGCTGC
TGCCGCAGGCACCGGCCGCGTGGAGGAGCAGGACGAGATGGCGGCCGAGG
GGGAGGAAGCTGAAGACAAGGGCGGCGGCGGAGGCGGGGGCCTGCGACGG
CGAGGCTCGGGCGCGTCGTCGTTCAACTACGTCAGAAGACGCGCCTCGGC
AAGCGAGGGGGAGGAGGAGGTGTGCTACGACTCGGCGGGGGATTGGGCTT
CGGACGGGAGCGACGGGTTGCCGGCGGTGCTTGCCAATCGGAGGAGGTCC
GCCGCGACGGACGACGAGGCGGCGGCTGCTGCGGTGGCGGCCGGGGGTAG
CGAAGAACGCCCCGGGTCATCGACGTCGTTGAGAGTCGGCGCGAAAAACG
ACCCGGTCCAGGAGAACGAAGCGCTGCCGCCGCCGCCGCCGGCGGGGGCG
GGGACGGGGGCGGCAGTTGTGAGAGCGGGTCAGAGCGCCGGGGAGAGCGC
TCTAGAGGAAGAGCAGCCCCGGTCATCGGAGCTTACGGTCGGAGAAGGAA
CGGCGCCGCCGTCTTCGTCGGTCGGGGGGGTGGACAGACGAGCGGAAGGG
ATCCCGCAAGGGCGAGCGGCTGCGCTCGCCGCTGCTTTCGAGCGCAAAAC
TACTAGCGGAGGGGGGAGTGGCGGGGGCGGCGTTAAAGGTGGGGGCGCCG
GAGGCGCCGGCGGCGGCAGCAGTCCCGGGTGGGGTTCGGTTAGGGAGAGG
GTGGCGGCACTCTCGGCGAAGACCGGCGGGGGCGCCACCGGAGGCGGTGC
CGGCGGCGGCAGCAGCGGCGGCGGCAAGAACAAAGTGAGGACGTTCACAT
CGGGGAGCAGGAAGCTGTGGCAAGATGGCAGCAGCGGCGGCGGCGGCGGC
GGCGGGGACAGCGGCGGCGGCGACGGTGGCGAGGATGAGACGTCCACTCC
CCCCCGGAGGCCGTCGCTAGCCTTGCGTGTCAGTTCGAACACGGCCGTCG
ATGAGTTCGATGCTGCTGTGTCTCAGGCCGGCAAGAAGGTAGCGAGGACA
TGGCCGCCGGTGCAATCTAAGGCTTTGATGAACTCGTCGTTTCCCGGCCG
AAGAGCTCTGACGCTGCTGCCGCCGCCGCCGGGGCATTGGGAACGGACGC
GGCGGCGGCGGCGGCCCGGTTGGTCGGCGGCGCCGCCCTCCCCCCACCGG
CGTTCGCCATCCCGTCACCACCTCTTAGATCGTTCGCCCAGCACGGAGGA
GACGATGACGACGATGGCAGACAAGGAGACGACGAAGAAGAAGTAGACCT
GAACGCCAGCAGGGGGAAAGAAGGGGACGGAGCCGCCACCGCCGCCGCCG
GAAACGCGAGCGGCGCAGGAGGGGACGGCGGGGGTAGCGGCGCCGGCAGC
ATTTCGCAGGAAATGGAGCACGCCGCGGAAGAGGAGCGAAACCCTCTTCC
TCCGCCATCGGGCGGCGGCGACGCCGCCGCTGTCGCCGCCGGGAACAGCT
TGGGGGTGACGGGGGCAGCGGTGACCCGGCGAAAAAGCGACGGCGGCGGG
GGGGGATCGAGGGGCGGGCGCACGCGGTCGACGTCCGGGGACGGCGGCGT
CGGGGCCAAGGGGCGCGCGAAGCGGGAGGAAAGGTCGAGTTTGAGGTTGT
CGGACGCTCGCGGGAGCTTCATCGGGGGCAGTACACCGACCAAGGGTGCT
GCTGCTGCCGCAGGCACCGGCCGCGTGGAGGAGCAGGACGAGATGGCGGC
CGAGGGGGAGGAAGCTGAAGACAAGGGCGGCGGCGGAGGCGGGGGCCTGC
GACGGCGAGGCTCGGGCGCGTCGTCGTTCAACTACGTCAGAAGACGCGCC
TCGGCAAGCGAGGGGGAGGAGGAGGTGTGCTACGACTCGGCGGGGGATTG
GGCTTCGGACGGGAGCGACGGGTTGCCGGCGGTGCTTGCCAATCGGAGGA
GGTCCGCCGCGACGGACGACGAGGCGGCGGCTGCTGCGGTGGCGGCCGGG
GGTAGCGAAGAACGCCCCGGGTCATCGACGTCGTTGAGAGTCGGCGCGAA
AAACGACCCGGTCCAGGAGAACGAAGCGCTGCCGCCGCCGCCGCCGGCGG
GGGCGGGGACGGGGGCGGCAGTTGTGAGAGCGGGTCAGAGCGCCGGGGAG
AGCGCTCTAGAGGAAGAGCAGCCCCGGTCATCGGAGCTTACGGTCGGAGA
AGGAACGGCGCCGCCGTCTTCGTCGGTCGGGGGGGTGGACAGACGAGCGG
AAGGGATCCCGCAAGGGCGAGCGGCTGCGCTCGCCGCTGCTTTCGAGCGC
AAAACTACTAGCGGAGGGGGGAGTGGCGGGGGCGGCGTTAAAGGTGGGGG
CGCCGGAGGCGCCGGCGGCGGCAGCAGTCCCGGGTGGGGTTCGGTTAGGG
AGAGGGTGGCGGCACTCTCGGCGAAGACCGGCGGGGGCGCCACCGGAGGC
GGTGCCGGCGGCGGCAGCAGCGGCGGCGGCAAGAACAAAGTGAGGACGTT
CACATCGGGGAGCAGGAAGCTGTGGCAAGATGGCAGCAGCGGCGGCGGCG
GCGGCGGCGGGGACAGCGGCGGCGGCGACGGTGGCGAGGATGAGACGTCC
ACTCCCCCCCGGAGGCCGTCGCTAGCCTTGCGTGTCAGTTCGAACACGGC
CGTCGATGAGTTCGATGCTGCTGTGTCTCAGGCCGGCAAGAAGGTAGCGA
GGACATGGCCGCCGGTGCAATCTAAGGCTACCGAGACCACGGTGCCACCA
TCTGCGGCGGCGGCTGCTGCTGCTGCCCTCAACGGGGAAGAGGCGCCCTC
GATTGATGGCCTGACAGAGGCGGGTCCAACGGCGGGAGCGTCCAAGGACG
CTGCCCCCGCCGTCGAACCTGCTGCTGCTGCTGCTGCTGCTGCCACCGCG
CGTGCAGGGGCCGAAGCAATAGAAGAGGAAGAAGCGGCAGCGCCTGTGGT
GCCGCCAGAGTCTGACCCGAGCCGGCGGGAACCGGGGACCCCGTCTGTAG
GGTCCGGGAAGCGATCGAGCGGCGGCGGTAGTGTGTCTGTGGGGGATAGT
GCTCCTGCTTGCGGGCTACCGAGACCACGGTGCCACCATCTGCGGCGGCG
GCTGCTGCTGCTGCCCTCAACGGGGAAGAGGCGCCCTCGATTGATGGCCT
GACAGAGGCGGGTCCAACGGCGGGAGCGTCCAAGGACGCTGCCCCCGCCG
TCGAACCTGCTGCTGCTGCTGCTGCTGCTGCCACCGCGCGTGCAGGGGCC
GAAGCAATAGAAGAGGAAGAAGCGGCAGCGCCTGTGGTGCCGCCAGAGTC
TGACCCGAGCCGGCGGGAACCGGGGACCCCGTCTGTAGGGTCCGGGAAGC
GATCGAGCGGCGGCGGTAGTGTGTCTGTGGGGGATAGTGCTCCTGCTTGC
GGTCGGCAGGAGAGCAGTAGCGACGACTCCGACGAGGAGGGTGGCTACGA
GCCGGTCCTAGCGCCGCTCTCATTGGTGGACTGGTCGCACGAGCCGTTGC
TCGCCCTATGCGATTGCGACTTGCCGCAGCCCAGGGAGTGGACTCTAGCC
GATATTGGCAAAGAGTCGGCAGGAGAGCAGTAGCGACGACTCCGACGAGG
AGGGTGGCTACGAGCCGGTCCTAGCGCCGCTCTCATTGGTGGACTGGTCG
CACGAGCCGTTGCTCGCCCTATGCGATTGCGACTTGCCGCAGCCCAGGGA
GTGGACTCTAGCCGATATTGGCAAAGAG