mRNA_E-fasciculatus_F_contig12475.1903.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI) HSP 1 Score: 478 bits (1229), Expect = 2.710e-164 Identity = 256/299 (85.62%), Postives = 271/299 (90.64%), Query Frame = 1
Query: 1 SSLLMQLAVVLSCFSLSLNVFSVYYNYFDFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSVGRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLPLFCASGCGVVGLAVAWYALRKAGEPGAADPKATTNPSDVDAEEGGVMASPTVDTADSSTAPPAENSSVGSDGGDCGHPGKETPAANPAVLMRPASRATGLGDDEDTMSDMSEPLLPRGDRFDSRSSS 897
SSLLMQLAVVL+CFSLSLNVFSVYYNYFDFRYHWSPL+ISL+FSTFGILLALTSGL IRFLVPKRLSVGRGVLLGLALQSSST LFGLAS+GWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQ + VQCLRNVSQGLAGV+YGQIFSLGVSTR+E ALGF+LPGLPLFCASGCG L +AWYALRKAGE GAADPK+T NPSDV+AEE G+MAS TVD DSSTA PAE+SS GD G GKE PAANP LM+PASR TGLGD+EDTMSDMSEPLLPRGDRFDSRSSS
Sbjct: 283 SSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGA-VQCLRNVSQGLAGVLYGQIFSLGVSTRVENALGFVLPGLPLFCASGCGATALTIAWYALRKAGETGAADPKSTANPSDVEAEEDGMMASNTVDVTDSSTATPAEDSS-----GDGGRSGKEAPAANPTALMQPASRVTGLGDEEDTMSDMSEPLLPRGDRFDSRSSS 575
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI) HSP 1 Score: 157 bits (398), Expect = 5.170e-40 Identity = 91/193 (47.15%), Postives = 121/193 (62.69%), Query Frame = 1
Query: 1 SSLLMQLAVVLSCFSLSLNVFSVYYNYFDFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSVGRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLPLFCASGCGVVGLAVAWYALRK 579
S L+++A F LSLNVF+ YNY D+R+ W+P IS +F+T+ IL+AL G IRF+VPKRL+ +G L G+++Q S + GL RGWM Y LV LQ ITEPC+Q +MA VG + QGSLQ + V LR V +G+A V+ Q+FS G S E+A P F A+ +V LAVAW+ LRK
Sbjct: 358 SRALLRIACSYFLFVLSLNVFATGYNYVDYRFGWTPSEISYFFATYNILMALAGGWVIRFIVPKRLTEEKGALFGISVQVFSVMVSGLCFRGWMLYPALVFGALQNITEPCLQAIMATFVGPELQGSLQGA-VMSLRVVGEGVAAPVFTQVFSAGASVGFEEA--------PFFLATAISLVSLAVAWWPLRK 541
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: A0A7S1TPX7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPX7_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.130e-13 Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = 1
Query: 58 VFSVYYNYFDFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSVGRGVLLGLALQSSSTALFGLASRGWMCYVVLVATV-LQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLPLFCAS 531
VF V++ D+ Y W + ++++ + GIL+A + + LVPK S + VL+ +Q ++ + + LA GW Y++LV T + I P ++G++ + ++QGSLQ + +Q L ++ +VYG FS G S ++ LG GLPL A+
Sbjct: 261 VFGVWFYILDYNYDWGVVEVTIFITVAGILIAAAQVVGTKHLVPKVFSPAQAVLVASMVQCAAFSAYALAPVGWSIYLILVLTAGVGSIGAPSLRGILTSMAPPEQQGSLQGA-LQGLSQLTNAFMALVYGGAFSAGTSPFWKEHLGGHFAGLPLLIAA 418
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: A0A6I1K2G3_9BACT (MFS transporter DHA1 family tetracycline resistance protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A6I1K2G3_9BACT) HSP 1 Score: 79.7 bits (195), Expect = 4.140e-13 Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 1
Query: 79 YFDFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSVGRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQAS--SVQCLRNV-SQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLPLFCASGCGVVGLAVAWYALRK 579
Y +RYHW+P + + G+ A+ G R ++P RL R V +GL + ++ +GLA+ GWM YV++ + I+ P +QG+++ VGAD QG++Q S S+ + V LA ++G S G + LPG F +S V + +A + R+
Sbjct: 246 YTSYRYHWTPGQTGMSLAMVGLTAAIVQGGLTRAIIP-RLGERRSVTVGLTISAAGLIAYGLATEGWMAYVIIAVASISGISGPSVQGLISRSVGADEQGAVQGSLNSLASIAGVLGPPLATGLFGFFISAGAPVK--------LPGAAFFFSSALTVAAMLLAVRSFRR 406
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: A0A535IJB1_9CHLR (TCR/Tet family MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IJB1_9CHLR) HSP 1 Score: 73.9 bits (180), Expect = 2.510e-11 Identity = 55/184 (29.89%), Postives = 98/184 (53.26%), Query Frame = 1
Query: 13 MQLAVVLSCFSLS-LNVFSVYYNYFDFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSVGRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLPLFCASGCGVVGLAVA 561
+ L V+ C +L+ L + S + Y +R++W+ L L + G++ + G IR L P RL R +L+ L L+GLA++GWM YV++ T L ++++P QG+++N V + QG++Q + + +++ + +V +FS T E+ F +PG F + VVGL +A
Sbjct: 140 LNLTAVVVCNNLAGLALQSTWVLYNAYRFNWTALEQGLSLALVGVIAIVVQGWLIRVLQP-RLGERRLLLISLVSSVIGLVLYGLATQGWMMYVIMTVTALSFLSQPAAQGLISNAVKPNEQGAIQGALTSMI-SLTAIVGPIVGANVFSY--FTAPEQP--FKVPGAAFFLGAALTVVGLLLA 317
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: A0A4P7JA95_9RHOB (MFS transporter n=1 Tax=Boseongicola sp. CCM32 TaxID=2552942 RepID=A0A4P7JA95_9RHOB) HSP 1 Score: 72.4 bits (176), Expect = 1.190e-10 Identity = 59/193 (30.57%), Postives = 94/193 (48.70%), Query Frame = 1
Query: 19 LAVVLSCFSLSLNVFSVYYNYF-DFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSVGRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLPLFCASGCGVVGLAVAWYALRKAGEPG 594
L +V+ + +S V+ V + Y+ + WS I L + +G+ +AL GL IR ++P L R V GL L + +GLAS GWM +V+L + L I P +Q +M+ G D+QG LQ + L +S ++ +V Q F + AL PG P ++ + G + + R+AG G
Sbjct: 218 LLIVMFSYQISNFVYPVIWAYYTQAAFGWSTGQIGLSLAGYGLSVALVQGLLIRVILPV-LGESRAVFWGLLLNMACLVGYGLASAGWMIWVLLPISALGAIVAPAMQALMSRRAGPDQQGELQGV-LASLGALSMIISPLVMTQAFFWFTRAGADPAL----PGAPFLLSAVLMLAGFTIFAFGSRRAGADG 404
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: A0A511N5B0_9DEIO (Tetracycline resistance MFS efflux pump n=2 Tax=Deinococcus TaxID=1298 RepID=A0A511N5B0_9DEIO) HSP 1 Score: 68.9 bits (167), Expect = 1.720e-9 Identity = 49/162 (30.25%), Postives = 77/162 (47.53%), Query Frame = 1
Query: 91 RYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSVGRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLPLFCASGCGVVGLAVAWYALR 576
RY W P + G++ A+ G + L+PK L R +LLGL L FGLA++GWM YV++V + I P IQG+++ V QGS+Q + VS + G + + + A +PG+P F + ++G +A +A R
Sbjct: 243 RYGWGPQANGFSLTAVGVMGAIVQGALVGILIPK-LGEKRAILLGLGLGVLQFIAFGLATQGWMIYVIIVVGAIGGIAGPAIQGLVSRQVSETEQGSVQGALSGLWSLVS--IVGPILATFIFAYFTNKTNGAP--YIPGMPFFVGALMMLLGTFIAIWAFR 399
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: A0A521ZT07_9BACT (MFS transporter (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A521ZT07_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 3.180e-9 Identity = 43/152 (28.29%), Postives = 78/152 (51.32%), Query Frame = 1
Query: 79 YFDFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSVGRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFL-LPGLPLFCAS 531
Y +RY W+P + L + G++ + G R ++PK L R +++GL + +GLA++GWM YV+LV + I P +QG+++ V + QG++Q + LAG+V G + + G+ +A + +PG F ++
Sbjct: 6 YTSYRYGWTPKEVGLSLALVGVMAVIVQGGLARKIIPK-LGERRSIVIGLTNATFFLTTYGLATQGWMVYVLLVVGSIGGIAMPALQGLVSRSVPLNEQGAVQGALASLA-----SLAGIV-GPLVATGLFGHFVRAEATVKIPGAAFFASA 150
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: UPI00094669C6 (MFS transporter n=1 Tax=Verrucomicrobium spinosum TaxID=2736 RepID=UPI00094669C6) HSP 1 Score: 67.4 bits (163), Expect = 3.940e-9 Identity = 49/154 (31.82%), Postives = 81/154 (52.60%), Query Frame = 1
Query: 64 SVYYNYFDFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSV---GRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLP 516
S++ Y RY W ++ + GIL+A+ G L K L V +G+ LGL + A +GLA++GW+ Y+VLV L I P Q ++ VG D QG++Q + + L +V+ + +++ +F++G+ T EK + PGLP
Sbjct: 88 SLWVLYTGIRYGWDTKHVGASLAIVGILMAVVQG----GLAGKILGVLGDRKGLALGLLATALGMAGYGLATQGWVVYLVLVVGALGCIAGPAAQAMITREVGPDEQGAVQGA-LNSLTSVAGIVGPLLWTWLFAIGIGTDPEK----MQPGLP 232
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Match: UPI000174537A (TCR/Tet family MFS transporter n=1 Tax=Verrucomicrobium spinosum TaxID=2736 RepID=UPI000174537A) HSP 1 Score: 67.4 bits (163), Expect = 6.280e-9 Identity = 49/154 (31.82%), Postives = 81/154 (52.60%), Query Frame = 1
Query: 64 SVYYNYFDFRYHWSPLNISLYFSTFGILLALTSGLFIRFLVPKRLSV---GRGVLLGLALQSSSTALFGLASRGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQASSVQCLRNVSQGLAGVVYGQIFSLGVSTRIEKALGFLLPGLP 516
S++ Y RY W ++ + GIL+A+ G L K L V +G+ LGL + A +GLA++GW+ Y+VLV L I P Q ++ VG D QG++Q + + L +V+ + +++ +F++G+ T EK + PGLP
Sbjct: 235 SLWVLYTGIRYGWDTKHVGASLAIVGILMAVVQG----GLAGKILGVLGDRKGLALGLLATALGMAGYGLATQGWVVYLVLVVGALGCIAGPAAQAMITREVGPDEQGAVQGA-LNSLTSVAGIVGPLLWTWLFAIGIGTDPEK----MQPGLP 379 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12475.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12475.1903.1 >prot_E-fasciculatus_F_contig12475.1903.1 ID=prot_E-fasciculatus_F_contig12475.1903.1|Name=mRNA_E-fasciculatus_F_contig12475.1903.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=296bp MQLAVVLSCFSLSLNVFSVYYNYFDFRYHWSPLNISLYFSTFGILLALTSback to top mRNA from alignment at E-fasciculatus_F_contig12475:2054..3971- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12475.1903.1 ID=mRNA_E-fasciculatus_F_contig12475.1903.1|Name=mRNA_E-fasciculatus_F_contig12475.1903.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1918bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12475:2054..3971- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12475:2054..3971- >mRNA_E-fasciculatus_F_contig12475.1903.1 ID=mRNA_E-fasciculatus_F_contig12475.1903.1|Name=mRNA_E-fasciculatus_F_contig12475.1903.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1776bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12475:2054..3971- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |