mRNA_E-fasciculatus_F_contig12471.1899.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12471.1899.1
Unique NamemRNA_E-fasciculatus_F_contig12471.1899.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12471.1899.1 vs. uniprot
Match: D8LI76_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI76_ECTSI)

HSP 1 Score: 434 bits (1115), Expect = 7.760e-142
Identity = 228/234 (97.44%), Postives = 233/234 (99.57%), Query Frame = 1 
Query:    1 AKKNQVLLIRFVTSRTSTSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQRALRDRGALLESLEELPVQKTRVEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAV 702
            A K++VLL+RFVTSRT+TSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQRALRDRGALLESLEELPVQKT+VEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAV
Sbjct:  683 ASKHRVLLVRFVTSRTATSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQRALRDRGALLESLEELPVQKTKVEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAV 916
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12471.1899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI76_ECTSI7.760e-14297.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12471contigE-fasciculatus_F_contig12471:873..3714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons5
Model size702
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12471.1899.1prot_E-fasciculatus_F_contig12471.1899.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12471 873..3714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927753.7791293-CDS-E-fasciculatus_F_contig12471:872..11181622927753.7791293-CDS-E-fasciculatus_F_contig12471:872..1118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 873..1118 +
1695995680.1495972-CDS-E-fasciculatus_F_contig12471:872..11181695995680.1495972-CDS-E-fasciculatus_F_contig12471:872..1118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 873..1118 +
1622927753.7899115-CDS-E-fasciculatus_F_contig12471:1844..19191622927753.7899115-CDS-E-fasciculatus_F_contig12471:1844..1919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 1845..1919 +
1695995680.163062-CDS-E-fasciculatus_F_contig12471:1844..19191695995680.163062-CDS-E-fasciculatus_F_contig12471:1844..1919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 1845..1919 +
1622927753.8061361-CDS-E-fasciculatus_F_contig12471:2532..26661622927753.8061361-CDS-E-fasciculatus_F_contig12471:2532..2666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 2533..2666 +
1695995680.1775198-CDS-E-fasciculatus_F_contig12471:2532..26661695995680.1775198-CDS-E-fasciculatus_F_contig12471:2532..2666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 2533..2666 +
1622927753.8158178-CDS-E-fasciculatus_F_contig12471:2996..31651622927753.8158178-CDS-E-fasciculatus_F_contig12471:2996..3165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 2997..3165 +
1695995680.1879673-CDS-E-fasciculatus_F_contig12471:2996..31651695995680.1879673-CDS-E-fasciculatus_F_contig12471:2996..3165Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 2997..3165 +
1622927753.8262835-CDS-E-fasciculatus_F_contig12471:3636..37141622927753.8262835-CDS-E-fasciculatus_F_contig12471:3636..3714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 3637..3714 +
1695995680.198259-CDS-E-fasciculatus_F_contig12471:3636..37141695995680.198259-CDS-E-fasciculatus_F_contig12471:3636..3714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12471 3637..3714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12471.1899.1

>prot_E-fasciculatus_F_contig12471.1899.1 ID=prot_E-fasciculatus_F_contig12471.1899.1|Name=mRNA_E-fasciculatus_F_contig12471.1899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=234bp
AKKNQVLLIRFVTSRTSTSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQ
RALRDRGALLESLEELPVQKTRVEIDAQFLSQVEGMCQFDMVASLREAGV
SLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILP
SSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTA
RMQRKNRQVMQRISRSQLYQRELFQALRDGHMAV
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mRNA from alignment at E-fasciculatus_F_contig12471:873..3714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12471.1899.1 ID=mRNA_E-fasciculatus_F_contig12471.1899.1|Name=mRNA_E-fasciculatus_F_contig12471.1899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2842bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12471:873..3714+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAAAAAAAAACCAGGTGCTCCTTATTCGATTCGTCACGTCGAGAACGTC
CACCTCCCGAGAGGTATTCCGCCTGGCGGCCGCCGCCGCGGAGAACGGCG
AGCCCCTGGCCATTGCGCCGGCGGCGAAGGGATTCGTGTCGAGCGTGCAG
CGCGCGCTTCGGGACCGGGGTGCCCTGCTGGAGTCGCTGGAGGAGCTCCC
GGTGCAGAAGACGAGGGTCGAGATCGACGCACAGTTTTTGAGTCAGGTGT
GTGATGCGCGCGAGAGCATTTTTTTTCTTTTTTCTGTGAGTTAGTTTTGC
GTGCGTGTGTCGTGGTAGGGGCGGGGGGACTGCAGCCTAGGTGGTCATGT
GTGTTACTATTATATAGTGCTGTTTTGCTCGGAGGTATGCATACAATACA
TGTTCTTGTTTTGTCGTTGTTGATGGGGTTGGTTCATAGCTCGTTCGCTG
GCAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTC
TCTCTCTCTTGTGTTGAGTTTTTTTATCGCCTTGCATGTACATTACGCAT
ACACCAGAACAACAGACCAGCTGGGTCGTCCCGAACTATAGCCGAAACGG
AAGGGCACAAATATCTCCTGATTCTATCTCATCATGACATCGCATCACAT
GGTCTGACAGCAGTGCCAAATAGCCTTGGGTAACACACCATCACATGGCT
ACCTCCAAGTACCATAACACCTTCTACCCGACGAACCCAGGCACTAACCT
AACCACCCAGCTCACGCTCTGTCGCGTCTTGAGGTGGTGACTGACGTCCC
CTTGATTTGTGTCTCGTTATCTCTTTGTATTTAATTCGTGCTCGCTTTGG
TTGCCCTCTTCTTTTTTTTGTTCTGCCGCCGCCTGCCTTGCTCACCGACA
ACACCCGCTCACGCGGACAAACCGACGACTACGACGACGACGACGACGAC
GACGACGACGACCATGGCAAAGGTGGAGGGCATGTGCCAGTTCGACATGG
TGGCGAGCTTGAGAGAGGCAGGGGTTTCGTTGGACGAGCACGCCAGGGTG
AGTAAAACAGTGAATGAGTCAGGAGTGAGGAGTGTGAAGAGTGAGGAGTG
TGAGGAGTGAGGAAGAACCACCACCGAAGGGGACACGCGGACGGACGGAC
TAATAGAACAAACATTGGAGAAGCCTTGGCTTTAACACACACGACTGAAA
CGGCTGTGCTAATATTTGGTCAGCAGCCGGTTAGATCAGCCAAAAGAGAA
CACACTCGTGGTGAATACAGCCATTTCCGCGTGTTTTATTAGAGTGGTTG
TGGGTGATGGAATAGTATCTTCTTTTTTTTACATGATGCAGTAGCAGTGC
CTCTGACCTCCTACCGACGCGACAGTGCACAGGGGAGTTCAACAGAGAGA
GACAGGCCTTTGGGCGTGACTAAGACCACTACTACTGTGATACAACATGC
TTTGTGCGGTTTCGTTCATTTCCTTCTTAGCAGAGAAAGAAAAAAAAATG
ACCCCCCCCCTCTTGGCCGTCTTACTTTAATGCCTACCACGTGACCGAAT
AGTAGGTGACTGCTGCGTCGAGAAATGAACGAAAATAAATTAAAGTGTGT
AGCGAAAATAAACCCGTGATGCGTTTCGACGCCACTACTCCGTGGTGTGT
GGTGTGGCAGAACGAGGAGCTCCGGGGAGTGGTGGTGACGCGGCTGCTTG
AGGAGATGTTCAACCTCGTCGGCCTCCCGATGCTGCCGCCGCCGCCCCAG
CTCGTGCTCGCGATGCCGCGCCCGAACGACATCCTGCCTTCTAGGTGTGT
TTTGTTTTGTTTGTGTTTCTACTCTCTCCGCGGAGGACAATGTTGGGAAT
GTTGGTTTTTTTTTTTTTTTGTTGCTTGCTCTCTCTTGTCGTCGTAGCCT
CGTCCCTGCCGTACGCTGGACCGTGCGTGAGGTTTTGGCGGGGGGTTGGT
AGGGAGAGCCCGTCCTCAGTTCATCCTTTGTCCCGCCCCCGTCCCGTCCC
ATTTTCCCGCCCTTGTCCCATGCGGTTCCCGTCCCATCCCATTCCCGTCC
CGTCCCTTCATGTGCTCGTACCGTCCCATCCCGCCCCCGCCCCGTTCCGT
CCCGTCCCTATGCCGTATATGTAGCGTGGACCCCATGCCGGATTTGTGCG
AGGAGGATCGGGGGGAGCTGTCGTCCCACCGCTTCTGCTCCGAAGCGAGC
CGGGTGATGGCCAACGTGCTTGCCCGGTGCATCCGGTACACGGAGAAGTG
CGACGAGCAGATGACGGCCCGCATGCAACGGAAGAACCGGCAGGTGAATG
AATGAATGGAAGGAGACCAACATATGATACCACTTTTTTTGAGCGGGGTT
TTACTCGGTTAAGGATGTATGTACCAAGGTTGTGGCGGGGAGATCGGGGG
GGGGTGCGGAGGGGGATGTGTGCTAGTTTAGTGGATGCCTTTTTGTCCTA
TGCGGCGTGGTTACTTTGTTGGGAGACCGTCGCTTGCCCAGGTCGCGTGC
GTTTTGCTTAGACTAGTCTGCCCGATTCTGACAAACAACGGTGTTGTGTC
AGTGTGTTTGTTTTTTGTTTCCTCTCTAGGATCGGTTTACATTGAAGCCA
CACCTGCCTGCGTTGCAACAGCAGTGTTGAAGTTGGTTTTCTGACAACCG
CTGCTGTGCACCATGCCCATGCACTTCGCGCCCCCGCCCCCTCTCGCCTC
TTTTTCATACTTCCGATCTTGGTTGTGTCCATTTTCGTTGGTCCCCTTGC
AAACGTGTGTCCAGGTTATGCAACGAATATCGCGTTCCCAGCTCTATCAA
CGAGAGCTGTTCCAGGCTCTTCGCGACGGACACATGGCGGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12471:873..3714+

>mRNA_E-fasciculatus_F_contig12471.1899.1 ID=mRNA_E-fasciculatus_F_contig12471.1899.1|Name=mRNA_E-fasciculatus_F_contig12471.1899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1404bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12471:873..3714+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAAAAAAAAACCAGGTGCTCCTTATTCGATTCGTCACGTCGAGAACGTC
CACCTCCCGAGAGGTATTCCGCCTGGCGGCCGCCGCCGCGGAGAACGGCG
AGCCCCTGGCCATTGCGCCGGCGGCGAAGGGATTCGTGTCGAGCGTGCAG
CGCGCGCTTCGGGACCGGGGTGCCCTGCTGGAGTCGCTGGAGGAGCTCCC
GGTGCAGAAGACGAGGGTCGAGATCGACGCACAGTTTTTGAGTCAGGCAA
AAAAAAACCAGGTGCTCCTTATTCGATTCGTCACGTCGAGAACGTCCACC
TCCCGAGAGGTATTCCGCCTGGCGGCCGCCGCCGCGGAGAACGGCGAGCC
CCTGGCCATTGCGCCGGCGGCGAAGGGATTCGTGTCGAGCGTGCAGCGCG
CGCTTCGGGACCGGGGTGCCCTGCTGGAGTCGCTGGAGGAGCTCCCGGTG
CAGAAGACGAGGGTCGAGATCGACGCACAGTTTTTGAGTCAGGTGGAGGG
CATGTGCCAGTTCGACATGGTGGCGAGCTTGAGAGAGGCAGGGGTTTCGT
TGGACGAGCACGCCAGGGTGGAGGGCATGTGCCAGTTCGACATGGTGGCG
AGCTTGAGAGAGGCAGGGGTTTCGTTGGACGAGCACGCCAGGAACGAGGA
GCTCCGGGGAGTGGTGGTGACGCGGCTGCTTGAGGAGATGTTCAACCTCG
TCGGCCTCCCGATGCTGCCGCCGCCGCCCCAGCTCGTGCTCGCGATGCCG
CGCCCGAACGACATCCTGCCTTCTAGAACGAGGAGCTCCGGGGAGTGGTG
GTGACGCGGCTGCTTGAGGAGATGTTCAACCTCGTCGGCCTCCCGATGCT
GCCGCCGCCGCCCCAGCTCGTGCTCGCGATGCCGCGCCCGAACGACATCC
TGCCTTCTAGCGTGGACCCCATGCCGGATTTGTGCGAGGAGGATCGGGGG
GAGCTGTCGTCCCACCGCTTCTGCTCCGAAGCGAGCCGGGTGATGGCCAA
CGTGCTTGCCCGGTGCATCCGGTACACGGAGAAGTGCGACGAGCAGATGA
CGGCCCGCATGCAACGGAAGAACCGGCAGCGTGGACCCCATGCCGGATTT
GTGCGAGGAGGATCGGGGGGAGCTGTCGTCCCACCGCTTCTGCTCCGAAG
CGAGCCGGGTGATGGCCAACGTGCTTGCCCGGTGCATCCGGTACACGGAG
AAGTGCGACGAGCAGATGACGGCCCGCATGCAACGGAAGAACCGGCAGGT
TATGCAACGAATATCGCGTTCCCAGCTCTATCAACGAGAGCTGTTCCAGG
CTCTTCGCGACGGACACATGGCGGTCGTTATGCAACGAATATCGCGTTCC
CAGCTCTATCAACGAGAGCTGTTCCAGGCTCTTCGCGACGGACACATGGC
GGTC
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