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Homology
BLAST of mRNA_E-fasciculatus_F_contig12471.1899.1 vs. uniprot
Match: D8LI76_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI76_ECTSI) HSP 1 Score: 434 bits (1115), Expect = 7.760e-142 Identity = 228/234 (97.44%), Postives = 233/234 (99.57%), Query Frame = 1
Query: 1 AKKNQVLLIRFVTSRTSTSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQRALRDRGALLESLEELPVQKTRVEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAV 702
A K++VLL+RFVTSRT+TSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQRALRDRGALLESLEELPVQKT+VEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAV
Sbjct: 683 ASKHRVLLVRFVTSRTATSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQRALRDRGALLESLEELPVQKTKVEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAV 916
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Exons | 5 |
| Model size | 702 |
| Cds size | 702 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12471.1899.1 >prot_E-fasciculatus_F_contig12471.1899.1 ID=prot_E-fasciculatus_F_contig12471.1899.1|Name=mRNA_E-fasciculatus_F_contig12471.1899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=234bp
AKKNQVLLIRFVTSRTSTSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQ
RALRDRGALLESLEELPVQKTRVEIDAQFLSQVEGMCQFDMVASLREAGV
SLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILP
SSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTA
RMQRKNRQVMQRISRSQLYQRELFQALRDGHMAV back to topmRNA from alignment at E-fasciculatus_F_contig12471:873..3714+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12471.1899.1 ID=mRNA_E-fasciculatus_F_contig12471.1899.1|Name=mRNA_E-fasciculatus_F_contig12471.1899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2842bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12471:873..3714+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAAAAAAAAACCAGGTGCTCCTTATTCGATTCGTCACGTCGAGAACGTC
CACCTCCCGAGAGGTATTCCGCCTGGCGGCCGCCGCCGCGGAGAACGGCG
AGCCCCTGGCCATTGCGCCGGCGGCGAAGGGATTCGTGTCGAGCGTGCAG
CGCGCGCTTCGGGACCGGGGTGCCCTGCTGGAGTCGCTGGAGGAGCTCCC
GGTGCAGAAGACGAGGGTCGAGATCGACGCACAGTTTTTGAGTCAGGTGT
GTGATGCGCGCGAGAGCATTTTTTTTCTTTTTTCTGTGAGTTAGTTTTGC
GTGCGTGTGTCGTGGTAGGGGCGGGGGGACTGCAGCCTAGGTGGTCATGT
GTGTTACTATTATATAGTGCTGTTTTGCTCGGAGGTATGCATACAATACA
TGTTCTTGTTTTGTCGTTGTTGATGGGGTTGGTTCATAGCTCGTTCGCTG
GCAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTC
TCTCTCTCTTGTGTTGAGTTTTTTTATCGCCTTGCATGTACATTACGCAT
ACACCAGAACAACAGACCAGCTGGGTCGTCCCGAACTATAGCCGAAACGG
AAGGGCACAAATATCTCCTGATTCTATCTCATCATGACATCGCATCACAT
GGTCTGACAGCAGTGCCAAATAGCCTTGGGTAACACACCATCACATGGCT
ACCTCCAAGTACCATAACACCTTCTACCCGACGAACCCAGGCACTAACCT
AACCACCCAGCTCACGCTCTGTCGCGTCTTGAGGTGGTGACTGACGTCCC
CTTGATTTGTGTCTCGTTATCTCTTTGTATTTAATTCGTGCTCGCTTTGG
TTGCCCTCTTCTTTTTTTTGTTCTGCCGCCGCCTGCCTTGCTCACCGACA
ACACCCGCTCACGCGGACAAACCGACGACTACGACGACGACGACGACGAC
GACGACGACGACCATGGCAAAGGTGGAGGGCATGTGCCAGTTCGACATGG
TGGCGAGCTTGAGAGAGGCAGGGGTTTCGTTGGACGAGCACGCCAGGGTG
AGTAAAACAGTGAATGAGTCAGGAGTGAGGAGTGTGAAGAGTGAGGAGTG
TGAGGAGTGAGGAAGAACCACCACCGAAGGGGACACGCGGACGGACGGAC
TAATAGAACAAACATTGGAGAAGCCTTGGCTTTAACACACACGACTGAAA
CGGCTGTGCTAATATTTGGTCAGCAGCCGGTTAGATCAGCCAAAAGAGAA
CACACTCGTGGTGAATACAGCCATTTCCGCGTGTTTTATTAGAGTGGTTG
TGGGTGATGGAATAGTATCTTCTTTTTTTTACATGATGCAGTAGCAGTGC
CTCTGACCTCCTACCGACGCGACAGTGCACAGGGGAGTTCAACAGAGAGA
GACAGGCCTTTGGGCGTGACTAAGACCACTACTACTGTGATACAACATGC
TTTGTGCGGTTTCGTTCATTTCCTTCTTAGCAGAGAAAGAAAAAAAAATG
ACCCCCCCCCTCTTGGCCGTCTTACTTTAATGCCTACCACGTGACCGAAT
AGTAGGTGACTGCTGCGTCGAGAAATGAACGAAAATAAATTAAAGTGTGT
AGCGAAAATAAACCCGTGATGCGTTTCGACGCCACTACTCCGTGGTGTGT
GGTGTGGCAGAACGAGGAGCTCCGGGGAGTGGTGGTGACGCGGCTGCTTG
AGGAGATGTTCAACCTCGTCGGCCTCCCGATGCTGCCGCCGCCGCCCCAG
CTCGTGCTCGCGATGCCGCGCCCGAACGACATCCTGCCTTCTAGGTGTGT
TTTGTTTTGTTTGTGTTTCTACTCTCTCCGCGGAGGACAATGTTGGGAAT
GTTGGTTTTTTTTTTTTTTTGTTGCTTGCTCTCTCTTGTCGTCGTAGCCT
CGTCCCTGCCGTACGCTGGACCGTGCGTGAGGTTTTGGCGGGGGGTTGGT
AGGGAGAGCCCGTCCTCAGTTCATCCTTTGTCCCGCCCCCGTCCCGTCCC
ATTTTCCCGCCCTTGTCCCATGCGGTTCCCGTCCCATCCCATTCCCGTCC
CGTCCCTTCATGTGCTCGTACCGTCCCATCCCGCCCCCGCCCCGTTCCGT
CCCGTCCCTATGCCGTATATGTAGCGTGGACCCCATGCCGGATTTGTGCG
AGGAGGATCGGGGGGAGCTGTCGTCCCACCGCTTCTGCTCCGAAGCGAGC
CGGGTGATGGCCAACGTGCTTGCCCGGTGCATCCGGTACACGGAGAAGTG
CGACGAGCAGATGACGGCCCGCATGCAACGGAAGAACCGGCAGGTGAATG
AATGAATGGAAGGAGACCAACATATGATACCACTTTTTTTGAGCGGGGTT
TTACTCGGTTAAGGATGTATGTACCAAGGTTGTGGCGGGGAGATCGGGGG
GGGGTGCGGAGGGGGATGTGTGCTAGTTTAGTGGATGCCTTTTTGTCCTA
TGCGGCGTGGTTACTTTGTTGGGAGACCGTCGCTTGCCCAGGTCGCGTGC
GTTTTGCTTAGACTAGTCTGCCCGATTCTGACAAACAACGGTGTTGTGTC
AGTGTGTTTGTTTTTTGTTTCCTCTCTAGGATCGGTTTACATTGAAGCCA
CACCTGCCTGCGTTGCAACAGCAGTGTTGAAGTTGGTTTTCTGACAACCG
CTGCTGTGCACCATGCCCATGCACTTCGCGCCCCCGCCCCCTCTCGCCTC
TTTTTCATACTTCCGATCTTGGTTGTGTCCATTTTCGTTGGTCCCCTTGC
AAACGTGTGTCCAGGTTATGCAACGAATATCGCGTTCCCAGCTCTATCAA
CGAGAGCTGTTCCAGGCTCTTCGCGACGGACACATGGCGGTC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12471:873..3714+ >mRNA_E-fasciculatus_F_contig12471.1899.1 ID=mRNA_E-fasciculatus_F_contig12471.1899.1|Name=mRNA_E-fasciculatus_F_contig12471.1899.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1404bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12471:873..3714+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAAAAAAAAACCAGGTGCTCCTTATTCGATTCGTCACGTCGAGAACGTC
CACCTCCCGAGAGGTATTCCGCCTGGCGGCCGCCGCCGCGGAGAACGGCG
AGCCCCTGGCCATTGCGCCGGCGGCGAAGGGATTCGTGTCGAGCGTGCAG
CGCGCGCTTCGGGACCGGGGTGCCCTGCTGGAGTCGCTGGAGGAGCTCCC
GGTGCAGAAGACGAGGGTCGAGATCGACGCACAGTTTTTGAGTCAGGCAA
AAAAAAACCAGGTGCTCCTTATTCGATTCGTCACGTCGAGAACGTCCACC
TCCCGAGAGGTATTCCGCCTGGCGGCCGCCGCCGCGGAGAACGGCGAGCC
CCTGGCCATTGCGCCGGCGGCGAAGGGATTCGTGTCGAGCGTGCAGCGCG
CGCTTCGGGACCGGGGTGCCCTGCTGGAGTCGCTGGAGGAGCTCCCGGTG
CAGAAGACGAGGGTCGAGATCGACGCACAGTTTTTGAGTCAGGTGGAGGG
CATGTGCCAGTTCGACATGGTGGCGAGCTTGAGAGAGGCAGGGGTTTCGT
TGGACGAGCACGCCAGGGTGGAGGGCATGTGCCAGTTCGACATGGTGGCG
AGCTTGAGAGAGGCAGGGGTTTCGTTGGACGAGCACGCCAGGAACGAGGA
GCTCCGGGGAGTGGTGGTGACGCGGCTGCTTGAGGAGATGTTCAACCTCG
TCGGCCTCCCGATGCTGCCGCCGCCGCCCCAGCTCGTGCTCGCGATGCCG
CGCCCGAACGACATCCTGCCTTCTAGAACGAGGAGCTCCGGGGAGTGGTG
GTGACGCGGCTGCTTGAGGAGATGTTCAACCTCGTCGGCCTCCCGATGCT
GCCGCCGCCGCCCCAGCTCGTGCTCGCGATGCCGCGCCCGAACGACATCC
TGCCTTCTAGCGTGGACCCCATGCCGGATTTGTGCGAGGAGGATCGGGGG
GAGCTGTCGTCCCACCGCTTCTGCTCCGAAGCGAGCCGGGTGATGGCCAA
CGTGCTTGCCCGGTGCATCCGGTACACGGAGAAGTGCGACGAGCAGATGA
CGGCCCGCATGCAACGGAAGAACCGGCAGCGTGGACCCCATGCCGGATTT
GTGCGAGGAGGATCGGGGGGAGCTGTCGTCCCACCGCTTCTGCTCCGAAG
CGAGCCGGGTGATGGCCAACGTGCTTGCCCGGTGCATCCGGTACACGGAG
AAGTGCGACGAGCAGATGACGGCCCGCATGCAACGGAAGAACCGGCAGGT
TATGCAACGAATATCGCGTTCCCAGCTCTATCAACGAGAGCTGTTCCAGG
CTCTTCGCGACGGACACATGGCGGTCGTTATGCAACGAATATCGCGTTCC
CAGCTCTATCAACGAGAGCTGTTCCAGGCTCTTCGCGACGGACACATGGC
GGTC back to top
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