mRNA_E-fasciculatus_F_contig1247.1898.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1247.1898.1
Unique NamemRNA_E-fasciculatus_F_contig1247.1898.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1247.1898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1247contigE-fasciculatus_F_contig1247:13905..15216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size654
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1247.1898.1prot_E-fasciculatus_F_contig1247.1898.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1247 13906..15216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927752.351183-CDS-E-fasciculatus_F_contig1247:13905..143681622927752.351183-CDS-E-fasciculatus_F_contig1247:13905..14368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1247 13906..14368 -
1695995679.9726315-CDS-E-fasciculatus_F_contig1247:13905..143681695995679.9726315-CDS-E-fasciculatus_F_contig1247:13905..14368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1247 13906..14368 -
1622927752.3610682-CDS-E-fasciculatus_F_contig1247:14455..145531622927752.3610682-CDS-E-fasciculatus_F_contig1247:14455..14553Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1247 14456..14553 -
1695995679.9822123-CDS-E-fasciculatus_F_contig1247:14455..145531695995679.9822123-CDS-E-fasciculatus_F_contig1247:14455..14553Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1247 14456..14553 -
1622927752.370965-CDS-E-fasciculatus_F_contig1247:15126..152161622927752.370965-CDS-E-fasciculatus_F_contig1247:15126..15216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1247 15127..15216 -
1695995679.9919097-CDS-E-fasciculatus_F_contig1247:15126..152161695995679.9919097-CDS-E-fasciculatus_F_contig1247:15126..15216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1247 15127..15216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1247.1898.1

>prot_E-fasciculatus_F_contig1247.1898.1 ID=prot_E-fasciculatus_F_contig1247.1898.1|Name=mRNA_E-fasciculatus_F_contig1247.1898.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=217bp
GDGTSNSGAGNAGDVGDPKEGGSRNSGGEKVGPQPVSAVVSRALSQAEAA
DGDVLGAETRSSAVVSTSPRGRGLWAAANGSETRGADGCAEDRLAVGDDD
NSTTAVAVTATSTPPLSASIPTSSPPSQATVEDGVVVQDQTVSSAATATA
AAGATAGAAGAPAAGATVLAAAAAPAAPAAPAAPAAAGAAACGGGTSNSG
AGNAGAVGGPTLPTSGG
back to top

mRNA from alignment at E-fasciculatus_F_contig1247:13905..15216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1247.1898.1 ID=mRNA_E-fasciculatus_F_contig1247.1898.1|Name=mRNA_E-fasciculatus_F_contig1247.1898.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1247:13905..15216- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGACGGCACTTCGAACAGCGGCGCCGGGAACGCAGGGGATGTAGGTGA
CCCGAAAGAGGGGGGAAGCCGCAACTCCGGCGGAGAGAAGGTGACTAAAG
AGTCGAATTGCCGTTGAACAACCTATCATGGCGCAAGGGAACAAATACAA
CGCCTGGTCGAGTACTCGCGCAGTAGGTAGAAAAGCGAGTGGTGGAGAAG
GTTGCTCTTGCTGGGCACGAGGCGCAACAGGTATACCCCTTGTACCAGTC
AGCTCGGTGGCACTACGCTATGGTTGGCCCCCACGTGTATGAGCGTCGGA
TGTGAATTTGCGCCCAAGGGGGCCGGCAGTCTGCGACAACTCGCTCTCAG
GGTGTGAATAGTAATAGTTGCACATGTAGTCGTGCTGCTGCCACCTGGTG
CTGGCGAGTCCTATCTCGTTGAAAGGTCCAGAGATTTGCAGCTCATGTTG
CTTGTCCTGAAATCATTGTGCTGACTTCCTGAGGGAAATGTTTCGGGACA
AAGTGGAATGGTGCTCAACAAGAGGTCACCGGTCGAGAGCGACAAACGTT
TGCATGTACAACTGTCAGCATACATGGTCGTGCCCGGCATACCTGTGGCA
GGATTCGAACAAAACTCAAGACCTCCTACCCCTCCCCCCATCGGTGACGT
TCTTCGTAAATAGGTCGGCCCGCAGCCGGTTTCGGCGGTGGTTTCACGAG
CCCTGTCCCAGGCAGAAGCTGCGGATGGCGACGTGCTGGGCGCGGAGACA
AGGTCCTCCGCGTCGGCCTTGCCTCCCTCACCTGCAGCCGGACCCGAGAA
GAAGCCGGATGGCGACATGGAGACGCCTTCGACGGTGGCCGGAGGCAGCG
TTGTGTCTACCTCCCCACGAGGGAGGGGACTTTGGGCTGCTGCCAACGGC
TCGGAAACACGCGGAGCTGATGGCTGTGCCGAGGATCGTCTGGCGGTTGG
TGATGATGACAACTCGACCACAGCGGTGGCCGTGACTGCGACTTCTACGC
CCCCTTTGTCGGCATCTATCCCGACATCTTCGCCTCCTAGCCAGGCAACG
GTTGAAGACGGTGTGGTCGTGCAGGACCAGACCGTCAGCTCTGCTGCTAC
TGCTACCGCTGCTGCAGGTGCCACTGCTGGTGCCGCTGGCGCTCCTGCTG
CTGGTGCCACTGTTCTTGCTGCTGCGGCTGCTCCGGCTGCTCCGGCTGCT
CCGGCTGCTCCGGCAGCTGCTGGTGCTGCCGCTTGTGGAGGCGGCACCTC
GAACAGCGGCGCCGGCAATGCAGGGGCTGTCGGCGGTCCGACACTACCAA
CGAGTGGCGGCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1247:13905..15216-

>mRNA_E-fasciculatus_F_contig1247.1898.1 ID=mRNA_E-fasciculatus_F_contig1247.1898.1|Name=mRNA_E-fasciculatus_F_contig1247.1898.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1302bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1247:13905..15216- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGACGGCACTTCGAACAGCGGCGCCGGGAACGCAGGGGATGTAGGTGA
CCCGAAAGAGGGGGGAAGCCGCAACTCCGGCGGAGAGAAGGGGGACGGCA
CTTCGAACAGCGGCGCCGGGAACGCAGGGGATGTAGGTGACCCGAAAGAG
GGGGGAAGCCGCAACTCCGGCGGAGAGAAGGTCGGCCCGCAGCCGGTTTC
GGCGGTGGTTTCACGAGCCCTGTCCCAGGCAGAAGCTGCGGATGGCGACG
TGCTGGGCGCGGAGACAAGGTCCTCCGCGTCGGCCCGCAGCCGGTTTCGG
CGGTGGTTTCACGAGCCCTGTCCCAGGCAGAAGCTGCGGATGGCGACGTG
CTGGGCGCGGAGACAAGGTCCTCCGCCGTTGTGTCTACCTCCCCACGAGG
GAGGGGACTTTGGGCTGCTGCCAACGGCTCGGAAACACGCGGAGCTGATG
GCTGTGCCGAGGATCGTCTGGCGGTTGGTGATGATGACAACTCGACCACA
GCGGTGGCCGTGACTGCGACTTCTACGCCCCCTTTGTCGGCATCTATCCC
GACATCTTCGCCTCCTAGCCAGGCAACGGTTGAAGACGGTGTGGTCGTGC
AGGACCAGACCGTCAGCTCTGCTGCTACTGCTACCGCTGCTGCAGGTGCC
ACTGCTGGTGCCGCTGGCGCTCCTGCTGCTGGTGCCACTGTTCTTGCTGC
TGCGGCTGCTCCGGCTGCTCCGGCTGCTCCGGCTGCTCCGGCAGCTGCTG
GTGCTGCCGCTTGTGGAGGCGGCACCTCGAACAGCGGCGCCGGCAATGCA
GGGGCTGTCGGCGGTCCGACACTACCAACGAGTGGCGGCCGTTGTGTCTA
CCTCCCCACGAGGGAGGGGACTTTGGGCTGCTGCCAACGGCTCGGAAACA
CGCGGAGCTGATGGCTGTGCCGAGGATCGTCTGGCGGTTGGTGATGATGA
CAACTCGACCACAGCGGTGGCCGTGACTGCGACTTCTACGCCCCCTTTGT
CGGCATCTATCCCGACATCTTCGCCTCCTAGCCAGGCAACGGTTGAAGAC
GGTGTGGTCGTGCAGGACCAGACCGTCAGCTCTGCTGCTACTGCTACCGC
TGCTGCAGGTGCCACTGCTGGTGCCGCTGGCGCTCCTGCTGCTGGTGCCA
CTGTTCTTGCTGCTGCGGCTGCTCCGGCTGCTCCGGCTGCTCCGGCTGCT
CCGGCAGCTGCTGGTGCTGCCGCTTGTGGAGGCGGCACCTCGAACAGCGG
CGCCGGCAATGCAGGGGCTGTCGGCGGTCCGACACTACCAACGAGTGGCG
GC
back to top