mRNA_E-fasciculatus_F_contig12468.1896.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12468.1896.1
Unique NamemRNA_E-fasciculatus_F_contig12468.1896.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12468.1896.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.570e-76
Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 3 
Query:  183 DNSIQFAVMRDPRAVAVSTYYHVLRNPNPKVDFV--GKSLEEAVLLKLLQICQFTTIRHILFDGQLSDRSKIFWYEDGMVDPLDWHYRWASLAGLTLPASWINDIDATQVKAEQKVRRDRHPGGQEVSSNRTWEDEVSPEIREEMDRIVRTWLPGALLDRLNIP 668
            D+S+QFAV+RDPRAVAVSTY++V  +P    D V  GKSL+EAVLL L Q+CQFTTIRH+LFDGQLSD+S+IFWYED M DPL WHYRWAS AG  LPASWI DIDAT  +A+QKV+RD HPGGQ+VSS RTWEDE+SP IREEMD I+RTWLPG LL+RL IP
Sbjct:   27 DDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKRDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGIP 190
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BLAST of mRNA_E-fasciculatus_F_contig12468.1896.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 1.630e-76
Identity = 118/222 (53.15%), Postives = 146/222 (65.77%), Query Frame = 3 
Query:    3 VEIALSTRSKHRFAVPLDCRWTHSGGIAHAGQGCWSVNGRPVENAADVWLCMKEASCEYSDNSIQFAVMRDPRAVAVSTYYHVLRNPNPKVDFVGKSLEEAVLLKLLQICQFTTIRHILFDGQLSDRSKIFWYEDGMVDPLDWHYRWASLAGLTLPASWINDIDATQVKAEQKVRRDRHPGGQEVSSNRTWEDEVSPEIREEMDRIVRTWLPGALLDRLNIP 668
            VEI++ST  KHR  V   C W+H  G  H G GCWS +G PVE  AD+W CM++  CE +DN +QF  +RDPRAVAVSTY+H +   N     +  SL++ VL  L  +C FTT+RHILF G LS+R+++FWYE  + DP DWHYRWAS AGL LP  WI+ + A     +     + HPGG E S NRTW+DEVSP IR EMD I+R WLPG LL R  IP
Sbjct:    5 VEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDN-NYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAEN---QAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIP 222
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BLAST of mRNA_E-fasciculatus_F_contig12468.1896.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 5.790e-63
Identity = 108/161 (67.08%), Postives = 127/161 (78.88%), Query Frame = 3 
Query:  207 MRDPRAVAVSTYYHVLRNP-NPKVDFVGKSLEEAVLLKLLQICQFTTIRHILFDGQLSDRSKIFWYEDGMVDPLDWHYRWASLAGLTLPASWINDIDATQVKAEQKVR-RDRHPGGQEVSSNRTWEDEVSPEIREEMDRIVRTWLPGALLDRLNIPA*EAS 683
            MRDPRAVAVSTY+++ R+P +      GKSL+EAV++ L QICQFTTIRHILFDGQLSDRS+IFWYED M DPL W+ RWASLAG TLPA WI DI A+  +A +  R R+ HPGGQ VSS+RTWEDEVSPE R EM+ I+RTWLPG LL R ++PA E S
Sbjct:    1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPASETS 161
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BLAST of mRNA_E-fasciculatus_F_contig12468.1896.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.090e-42
Identity = 83/227 (36.56%), Postives = 127/227 (55.95%), Query Frame = 3 
Query:    3 VEIALSTRSKHRFAVPLDCRWTHSGGIAHAGQGCWSVNGRPVENAADVWLCMKEASCEYSDNSIQFAVMRDPRAVAVSTYYHVLRNPNPK-VDFVGKSLEEAVLLKLLQICQFTTIRHILFDGQLSDRSKIFWYEDGMVDPLDWHYRWASLAGLTLPASWINDIDATQVKAEQKVRR---DRHPGGQEVSSNRTWEDEVSPEIREEMDRIVRTWLPGALLDRLNIPA 671
            V I +S+  KH   VP  C W H   +    +GC +VNGR V N  D   C+++  C   D+ IQ  ++RDPRAVAVS+++H+  + +P       +S++  VL  L  IC F  +R+++   +L  ++  F Y++ + DPL WH RW S  GLT P   +     T ++ E        D+HPGG+E +  RTWEDE+S ++ E+++ I R WLP  LL++  I A
Sbjct:  198 VSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIGA 424
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BLAST of mRNA_E-fasciculatus_F_contig12468.1896.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 9.350e-28
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 3 
Query:  357 LFDGQLSDRSKIFWYEDGMVDPLDWHYRWASLAGLTLPASWINDIDATQVKAEQKVRRDRHPGGQEVSSNRTWEDEVSPEIREEMDRIVRTWLPGALLDRLNIP 668
            +F+G LSDRS++FWYE+ + DP  WHYRWAS AGL LP +WI+ + A     ++++  +RHPGG + ++ RTW DEVSP I  +M+ I+R WLP  LL R  +P
Sbjct:    1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMVAVN---QERLFFNRHPGGGKRTAKRTWRDEVSPGIHHDMESILRKWLPPVLLARFEVP 101
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BLAST of mRNA_E-fasciculatus_F_contig12468.1896.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.780e-22
Identity = 52/150 (34.67%), Postives = 85/150 (56.67%), Query Frame = 3 
Query:  234 STYYHVLRNPNPKVDFV-GKSLEEAVLLKLLQICQFTTIRHILFDGQLSDRSKIFWYEDGMVDPLDWHYRWASLAGLTLPASWINDIDATQVKAEQKVRR---DRHPGGQEVSSNRTWEDEVSPEIREEMDRIVRTWLPGALLDRLNIPA 671
            S+++H+  +  P   +   +S++  VL  L  IC F  +R+++   +L  ++  F Y++ + DPL WH RW S  GLT P + +     T ++ E        D+HPGG+E +  RTWEDE+S E+ E+++ I R WLP  LL++  I A
Sbjct:    8 SSFFHLKTHHTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVVLQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGIGA 157
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BLAST of mRNA_E-fasciculatus_F_contig12468.1896.1 vs. uniprot
Match: A0A6H5KK10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK10_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.020e-8
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 3 
Query:  537 HPGGQEVSSNRTWEDEVSPEIREEMDRIVRTWLPGALLDRLNIP 668
            HPGG E    RTW++EVSP IR EMD I+R WLPG LL R  IP
Sbjct:   14 HPGGAETPFKRTWQNEVSPGIRPEMDSILRKWLPGVLLARYGIP 57
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12468.1896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JG38_9PHAE1.570e-7673.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDV7_9PHAE1.630e-7653.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI5.790e-6367.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJE4_ECTSI1.090e-4236.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUF6_ECTSI9.350e-2850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP89_9PHAE4.780e-2234.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK10_9PHAE2.020e-863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12468contigE-fasciculatus_F_contig12468:779..2543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1566
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12468.1896.1prot_E-fasciculatus_F_contig12468.1896.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12468 1671..2388 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927752.2813752-UTR-E-fasciculatus_F_contig12468:778..16701622927752.2813752-UTR-E-fasciculatus_F_contig12468:778..1670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12468 779..1670 -
1695995679.9322162-UTR-E-fasciculatus_F_contig12468:778..16701695995679.9322162-UTR-E-fasciculatus_F_contig12468:778..1670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12468 779..1670 -
1622927752.3186932-UTR-E-fasciculatus_F_contig12468:2388..25431622927752.3186932-UTR-E-fasciculatus_F_contig12468:2388..2543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12468 2389..2543 -
1695995679.961104-UTR-E-fasciculatus_F_contig12468:2388..25431695995679.961104-UTR-E-fasciculatus_F_contig12468:2388..2543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12468 2389..2543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927752.2915058-CDS-E-fasciculatus_F_contig12468:1670..21611622927752.2915058-CDS-E-fasciculatus_F_contig12468:1670..2161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12468 1671..2161 -
1695995679.9402516-CDS-E-fasciculatus_F_contig12468:1670..21611695995679.9402516-CDS-E-fasciculatus_F_contig12468:1670..2161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12468 1671..2161 -
1622927752.306405-CDS-E-fasciculatus_F_contig12468:2360..23881622927752.306405-CDS-E-fasciculatus_F_contig12468:2360..2388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12468 2361..2388 -
1695995679.9512577-CDS-E-fasciculatus_F_contig12468:2360..23881695995679.9512577-CDS-E-fasciculatus_F_contig12468:2360..2388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12468 2361..2388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12468.1896.1

>prot_E-fasciculatus_F_contig12468.1896.1 ID=prot_E-fasciculatus_F_contig12468.1896.1|Name=mRNA_E-fasciculatus_F_contig12468.1896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=173bp
MKEASCEYSDNSIQFAVMRDPRAVAVSTYYHVLRNPNPKVDFVGKSLEEA
VLLKLLQICQFTTIRHILFDGQLSDRSKIFWYEDGMVDPLDWHYRWASLA
GLTLPASWINDIDATQVKAEQKVRRDRHPGGQEVSSNRTWEDEVSPEIRE
EMDRIVRTWLPGALLDRLNIPA*
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mRNA from alignment at E-fasciculatus_F_contig12468:779..2543-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12468.1896.1 ID=mRNA_E-fasciculatus_F_contig12468.1896.1|Name=mRNA_E-fasciculatus_F_contig12468.1896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1765bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12468:779..2543- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGTAGAGATTGCTCTTTCGACTAGAAGCAAGCACCGGTTTGCTGTTCCC
TTGGACTGCCGCTGGACACACAGTGGGGGGATCGCCCATGCGGGGCAGGG
ATGTTGGAGCGTCAATGGACGACCTGTGGAAAATGCTGCAGATGTGTGGC
TCTGTATGAAAGAAGCATCGTGCGAGTATTCAGGTACGTGTCAACCAAAC
CCAAACATCGAGGTGCTGGAGCAATTGCCCTCACACCGTCCCCTGTCGTC
GCACAGTAGTACAAGGAGTGAACAATGCCTTCTCCTTTGCCCGAGTGATC
CTGATTTGCAAGGTCCGGAAACCTAACCCCCATCACATGGCTTCGCCCGA
ACTTCCCGACCTTGTGTGCTACTGCCTACTAGATAATTCCATCCAGTTCG
CGGTGATGAGGGACCCTCGTGCAGTGGCTGTGAGCACCTACTACCACGTT
CTGAGAAACCCAAACCCCAAGGTGGATTTTGTGGGAAAGTCTTTGGAAGA
GGCCGTGTTGCTGAAACTTCTGCAAATCTGCCAGTTCACCACCATCCGAC
ACATCTTGTTCGATGGGCAGTTGTCAGACAGAAGTAAAATCTTCTGGTAC
GAAGATGGTATGGTAGACCCGCTAGATTGGCACTATCGATGGGCATCGCT
CGCGGGCTTGACGCTGCCCGCAAGCTGGATAAATGACATAGACGCGACCC
AGGTGAAGGCGGAGCAGAAGGTTAGGCGCGATCGTCACCCTGGAGGACAA
GAGGTGTCTTCGAACAGAACCTGGGAGGACGAGGTTTCGCCGGAAATTCG
CGAAGAGATGGACCGCATCGTTCGAACGTGGCTGCCTGGGGCCCTCCTAG
ACCGACTTAATATACCTGCTTGAGAAGCGTCTTTGAACATCGGTCGTTTG
AACATGCGTCCAACGGCCGTATTGCTTTGCAGACCTTGATTTGGCTGGAC
CCAACCCCTCCATGGGTGACCAAAAGCCCTGGTTGTGGGCAGTTTGGGCA
ACCTCCATACAAATATAGTGGGGCACGATGTACAACATCCCCACCGTGGG
TAATCATTGCGATGAAACGATGAGGAAGCTGTGCAAGATTTCCTTTCTTG
GAGGTTGGCGCATTGCGCACAAACCGGTTAGGGGACAGGTTGACGATGGT
AGTGCAAGGTGTACCGTTTCTTGGAGGTTGGCGCAATGCGCGCGGGCCGG
TTGGGGGGAAGATTCCAAACGCCCTTGCGGGTAAAGAAATCACCTTGCTC
TCATCCCGCGCCCTCATGCGCCAGCGAGAACAATATGCATACTACAACGC
TCTACGATTGATTCAAATGCAACCAGTGAGATATGACGAGCGGGGTTGTT
GTCTGCCTCCTCTCGACGTTCCCGTCAAGTTTTAGGCGCCATCAGGACCC
GAGAAAATGCTTTGAACCGTGTTGCAGTGAAGGTATCGGTGACGCCACCT
GGATGACCTGGAGGATACCGATCATCAGCAAGACAAAATAAACGCATGCC
GTCGAGGAATGACGGTAATGCGTTCACCCTCGGTACAGCAGAGGTTGTTG
GTATACTTCGTACAAGGCTCCCCTTTCGGGAGATAGGTGGCTTGCCTCTA
GGGGGCGACGCAAGAGGTGATGGCCAAGGTCATCGCGGTCGCATCGTTGC
TCGTTACATCTCAAATATACGGACGTTTCGGTAGTAGTACGGGTTTCGCG
TACAACCTGCAGAATATATATTGCCTGAAATGTTTTGCGTCATGGGGTCA
TGTGCAACCAACCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12468:779..2543-

>mRNA_E-fasciculatus_F_contig12468.1896.1 ID=mRNA_E-fasciculatus_F_contig12468.1896.1|Name=mRNA_E-fasciculatus_F_contig12468.1896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12468:779..2543- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAAGAAGCATCGTGCGAGTATTCAGATGAAAGAAGCATCGTGCGAGT
ATTCAGATAATTCCATCCAGTTCGCGGTGATGAGGGACCCTCGTGCAGTG
GCTGTGAGCACCTACTACCACGTTCTGAGAAACCCAAACCCCAAGGTGGA
TTTTGTGGGAAAGTCTTTGGAAGAGGCCGTGTTGCTGAAACTTCTGCAAA
TCTGCCAGTTCACCACCATCCGACACATCTTGTTCGATGGGCAGTTGTCA
GACAGAAGTAAAATCTTCTGGTACGAAGATGGTATGGTAGACCCGCTAGA
TTGGCACTATCGATGGGCATCGCTCGCGGGCTTGACGCTGCCCGCAAGCT
GGATAAATGACATAGACGCGACCCAGGTGAAGGCGGAGCAGAAGGTTAGG
CGCGATCGTCACCCTGGAGGACAAGAGGTGTCTTCGAACAGAACCTGGGA
GGACGAGGTTTCGCCGGAAATTCGCGAAGAGATGGACCGCATCGTTCGAA
CGTGGCTGCCTGGGGCCCTCCTAGACCGACTTAATATACCTGCTTGAATA
ATTCCATCCAGTTCGCGGTGATGAGGGACCCTCGTGCAGTGGCTGTGAGC
ACCTACTACCACGTTCTGAGAAACCCAAACCCCAAGGTGGATTTTGTGGG
AAAGTCTTTGGAAGAGGCCGTGTTGCTGAAACTTCTGCAAATCTGCCAGT
TCACCACCATCCGACACATCTTGTTCGATGGGCAGTTGTCAGACAGAAGT
AAAATCTTCTGGTACGAAGATGGTATGGTAGACCCGCTAGATTGGCACTA
TCGATGGGCATCGCTCGCGGGCTTGACGCTGCCCGCAAGCTGGATAAATG
ACATAGACGCGACCCAGGTGAAGGCGGAGCAGAAGGTTAGGCGCGATCGT
CACCCTGGAGGACAAGAGGTGTCTTCGAACAGAACCTGGGAGGACGAGGT
TTCGCCGGAAATTCGCGAAGAGATGGACCGCATCGTTCGAACGTGGCTGC
CTGGGGCCCTCCTAGACCGACTTAATATACCTGCTTGA
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