mRNA_E-fasciculatus_F_contig12467.1895.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12467.1895.1
Unique NamemRNA_E-fasciculatus_F_contig12467.1895.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12467.1895.1 vs. uniprot
Match: D8LD76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD76_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 5.010e-86
Identity = 159/225 (70.67%), Postives = 172/225 (76.44%), Query Frame = 1 
Query:    1 GATESRTGGGDVDPAAVDGXXXXXXXXGGTPVTAADRDEEGAARGTNREDGGVGGLDGMAGEESLVPGSSQEVDIRDGGGEGIGVPGDASEEVPPAAAVNDKRSPDGFDNKKAAAGHIERLDRERAVVRFPSRRENDMRGQGXXXXXXXXXXXXXXEAVPCRLEGRVENWKPPANADLKSSYRWNDEQKASMDKIRKFTRGGTALRELIHAEVMRLDILRHDLFC 675
            G TES+TG GD DPAA DG         GTPVT ADRDEEG  RGTN  DGGVGG +G+A EESLVPG SQEV  R GGGEG G+PGDA E VPPAAA ND R PDG D+K+AA GH E    ERAVVRFPSR E +  G           XXXX EAVPCRLEGRVENWKPPA+ADLKSSYRWNDEQKASM++IR+FTRGGTALRELIHAEV+RLD+LRHDLFC
Sbjct:  201 GETESQTGWGDADPAAADGGGADPEQGRGTPVTRADRDEEGVERGTNPNDGGVGGGEGVADEESLVPGPSQEVVTRGGGGEGNGLPGDAREAVPPAAAANDNRYPDGVDDKQAAPGHDEPSATERAVVRFPSR-EREEEG----------WXXXXGEAVPCRLEGRVENWKPPASADLKSSYRWNDEQKASMERIRRFTRGGTALRELIHAEVIRLDVLRHDLFC 414
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BLAST of mRNA_E-fasciculatus_F_contig12467.1895.1 vs. uniprot
Match: A0A6H5K564_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K564_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.180e-30
Identity = 75/116 (64.66%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:    1 GATESRTGGGDVDPAAVDGXXXXXXXXGGTPVTAADRDEEGAARGTNREDGGVGGLDGMAGEESLVPGSSQEVDIRDGGGEGIGVPGDASEEVPPAAAVNDKRSPDGFDNKKAAAG 348
            GA +SRTG GD DPAA DG         GTPVT ADRDEEGA  GTNR DGGVG  +G+AG+ESL+PG SQE+  R GGGEG GVPGDA E VP AA  ND RSPDG D+K+A  G
Sbjct:  413 GAMDSRTGWGDADPAAADGGGADPEQGRGTPVTRADRDEEGAEGGTNRNDGGVGRGEGVAGQESLLPGPSQEIVNRSGGGEGTGVPGDAREAVPLAAPANDNRSPDGVDDKQARGG 528
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12467.1895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD76_ECTSI5.010e-8670.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K564_9PHAE8.180e-3064.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12467contigE-fasciculatus_F_contig12467:2..3216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_001490.1
Exons4
Model size1484
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12467.1895.1prot_E-fasciculatus_F_contig12467.1895.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12467 176..2410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927752.1959503-UTR-E-fasciculatus_F_contig12467:1..1751622927752.1959503-UTR-E-fasciculatus_F_contig12467:1..175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12467 2..175 +
1695995679.8689914-UTR-E-fasciculatus_F_contig12467:1..1751695995679.8689914-UTR-E-fasciculatus_F_contig12467:1..175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12467 2..175 +
1622927752.2486448-UTR-E-fasciculatus_F_contig12467:2410..32161622927752.2486448-UTR-E-fasciculatus_F_contig12467:2410..3216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12467 2411..3216 +
1695995679.923946-UTR-E-fasciculatus_F_contig12467:2410..32161695995679.923946-UTR-E-fasciculatus_F_contig12467:2410..3216Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12467 2411..3216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927752.207034-CDS-E-fasciculatus_F_contig12467:175..3371622927752.207034-CDS-E-fasciculatus_F_contig12467:175..337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12467 176..337 +
1695995679.877666-CDS-E-fasciculatus_F_contig12467:175..3371695995679.877666-CDS-E-fasciculatus_F_contig12467:175..337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12467 176..337 +
1622927752.2171152-CDS-E-fasciculatus_F_contig12467:749..8331622927752.2171152-CDS-E-fasciculatus_F_contig12467:749..833Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12467 750..833 +
1695995679.8889842-CDS-E-fasciculatus_F_contig12467:749..8331695995679.8889842-CDS-E-fasciculatus_F_contig12467:749..833Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12467 750..833 +
1622927752.226556-CDS-E-fasciculatus_F_contig12467:1530..16771622927752.226556-CDS-E-fasciculatus_F_contig12467:1530..1677Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12467 1531..1677 +
1695995679.9021535-CDS-E-fasciculatus_F_contig12467:1530..16771695995679.9021535-CDS-E-fasciculatus_F_contig12467:1530..1677Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12467 1531..1677 +
1622927752.239577-CDS-E-fasciculatus_F_contig12467:2299..24101622927752.239577-CDS-E-fasciculatus_F_contig12467:2299..2410Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12467 2300..2410 +
1695995679.9130287-CDS-E-fasciculatus_F_contig12467:2299..24101695995679.9130287-CDS-E-fasciculatus_F_contig12467:2299..2410Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12467 2300..2410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12467.1895.1

>prot_E-fasciculatus_F_contig12467.1895.1 ID=prot_E-fasciculatus_F_contig12467.1895.1|Name=mRNA_E-fasciculatus_F_contig12467.1895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=168bp
MAGEESLVPGSSQEVDIRDGGGEGIGVPGDASEEVPPAAAVNDKRSPDGF
DNKKAAAGHIERLDRERAVVRFPSRRENDMRGQGGGGGGGGGGGGGGGEA
VPCRLEGRVENWKPPANADLKSSYRWNDEQKASMDKIRKFTRGGTALREL
IHAEVMRLDILRHDLFC*
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mRNA from alignment at E-fasciculatus_F_contig12467:2..3216+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12467.1895.1 ID=mRNA_E-fasciculatus_F_contig12467.1895.1|Name=mRNA_E-fasciculatus_F_contig12467.1895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3215bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12467:2..3216+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGCGACGGAAAGCCGAACCGGGGGGGGGGACGTCGATCCCGCGGCAGT
CGATGGCGGTGGCGTGGACCCTGAACAGGCAGGCGGGACACCTGTGACGG
CCGCGGATCGAGACGAGGAAGGGGCGGCGAGAGGGACAAACCGAGAGGAC
GGAGGCGTAGGTGGGTTGGACGGGATGGCTGGTGAAGAATCTCTCGTGCC
CGGATCGAGCCAAGAGGTCGACATCCGTGATGGAGGCGGCGAAGGAATCG
GAGTTCCAGGAGACGCCAGCGAGGAGGTACCCCCTGCCGCGGCCGTCAAC
GACAAGCGGTCCCCGGACGGCTTCGACAACAAGAAGGTTGGGAATGAGTG
GTTCACGTGTTGGGAATTGTTCACGTGTTCCAGACACGTTTGAGAGGCTC
GTTCTCTTATTAGTGCTGCTGCTCTCTTTTGTGCAGGAAAGCGGGGAGGA
TCAAAGCGCGAAGCGTGCGGCTCCCACCCGGAGAACGAGCCGAGGCATAT
CCGCACCCATCATCAATCAATCAATCTCCTTTTTTGTTTGCATCCATCTG
GCCTTGCGCGTGGATTTTTCCGTCCCCAGGCATTGCCCCGGATCTTCGAA
GTATGCGCCGCTTTGGTTTCGAGACGAGAGTAATAGTTGTGCTTGTCGAG
TTCCGTTGCAGTTAACCGACAAACAGTCTGCCAATCCAAAGCAGCAAAGA
CATTGTGCCCTCTCCACCTCGCTCTTGTGTCCCTCCCGACCCGGTCAGGC
TGCCGCTGGGCATATTGAACGGCTGGACCGAGAGCGCGCGGTCGTCCGAT
TTCCGTCGAGGCGAGAGAACGATATGAGAGGGGTCTTCTCTTTCCCCGTC
TTGGCACATGAGTGGAGAATATAAATAAATGTCGATAGCGGCAGCCTTGC
TCCCGTTCATCGTGTCTGGCTGCGCTGGCTCGGTTGGCAGCTACTGCTTC
CCTAGTGCGATGCTGGTCGATTAGTCGAGCTGACTGGGGCTTGATCGTCC
CCTTTCCTCGCTCCCTCACCCCCTGTGCATTCGTCACATGGTGCACGGTT
CAAGCAGAGATCATGAAGTCACCCCCCGCCCGTAGAAACATTTATTCAGT
TTCTGCGTGTGTGTTCCGCGGAATCATGTGCTTCGACGGCCCCCTCGCTC
CACCGACTTCACGACCGGCTCGCTACCGACCGCCGCCCTGCCTCAACCGC
AATCCCGACCGCACCGTTGGCATCACAGAAACTCCGATCGATGGGAACAG
GCACGAGGAGGAGGAGGAGGAGGAGCCGGCGAAGACGGCCAGCGGGCCGG
CCGCAGCAACAACCTTGCGGCCGCAGGACCCGCCGCGTCCGCAGCAGCGG
CAGGGCCAGCCGTGGTGCGCGACCCCGCCTCGTTGGCGCGGGAGGACGTA
GCCGCACAGCTTCCGGCGGGGACCAACACCTTTGGGAGGGGGAGGGCGGG
GGTTGGTGAAGGGGTAGGAGCGGGGAATTCACCGCCGTCGCCGCCCGGTG
GCAGTACTGGTGAGTATGGAGGCGTTGAGCAAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGCTGTGCCTTGTCGGCTGGA
GGGGAGGGTGGAGAACTGGAAGCCTCCGGCTAACGCTGACCTCAAGTCTT
CGTACCGTTGGAATGACGAACAGAAGGTGACATAACATGCAATGGCGGTC
CCTGTATACCGCCGGTGAACTCGCGATAATCAGTTGCAAAAGTGCCAAGT
ATAAGTCCGCCAAGCCCCTTGGCACCGCCTTGCGCGGGGATCACAACTAC
AACCAGAGCCCCCGAAAACGTGCCACCACGTACACAACCTCTTAACTTTG
CTCGAGGCTCTCGTTTCTTATGTGGAGGAGGTAACCTTACAGCGGCTTAT
ATTGGCTAAGTGTAGGATCCTTAACTGACTACCGGCTGGGGTGTTATATT
CGTAATCTTTATCTTGAACGTTTCTAAGCCTGACGTTGTTGGGTTTGGGG
TTCTGTAGTGGTGGCGCATATGTGTACCACAGCGGCGTTGTGCTTGCATG
GAACGGAGTCAATCGTTCAGTATTCAAGGGCTCTCCTTGGCTCGGTCTGT
CCGCACCGGCTCGATTGTTGAGCGGCAAACAAACAAACACGACTAAGCCT
ACGAGCGTTTCCCCCGCCTCCCTCTTTCGGGACGGACCCCATCTTCTCTT
GCAGCTGCATTTCATGCTTGCAATATGACGAGGAGCACATGCTTAAGTTT
TTCTTGTTTCCCTCTCCTGTCGCGTCCTGTCATCGGAATGCGCAACAGGC
GAGCATGGACAAGATTCGAAAGTTCACTCGTGGTGGTACTGCGCTCCGCG
AGTTAATTCACGCGGAGGTGATGCGCCTCGATATTCTTCGCCACGACCTC
TTCTGTTGAGGAAACACAGATAACCTACATATTTGTATGAGATAGGTTTA
CACGCTAGAAGATGCAGATCACGTGTGTGTAGACTATCGGTGGAACAAGC
GTTTCATTGGAATATCAAGGTGACATCATCATGTTTCATCAAGGTGACAT
CATCATGTTTCAAACGATAACGACATCGCTCAGGGTAGGTACCTTCATGA
GGTGCCCTCCTGATGCATGCGTGTCGTAACGGAATATTCCAAAGAATGTT
GTACATGTAGACTAGTCTAGTGCCTGGACATGATGTGAGTGGTGCTTTGT
GCAGGCAATACATTCATAGATAGTTGGACTACATTTCGCTATGAGCTATC
GTGTTGATCGGAGTGGTCTTCTCCGCGACACTCTTTGAAGCGCTCGAAGT
ACTACAACACTGCATGTATGTATCTTCGACCCAATGACTGATCTTTCGAA
AGGAAGGGACCGTCCATTCCTCACCGTCGTCTCGTTGCGAAAGACTATGA
TGTGTTTCAGAAACCAACCTCGTTCCTGTGTGGGGGGGCGGGCGGTGCAT
CTCCAGCCAGTGCTCTTGATCTGTTGCATGACACCGAATTTCGGTTCTAC
ACCAAACAGAAGCACGTGGGTTCGTAATTGATCCAGAAACAGGGCTGCTA
TCTATCTGTGTGCGTGCATGTTCGGCACGAGGGTTTTGTTTTCGATTTTT
CCTTTGCAGATGGTGCGCCCAACAATGAGTGATGAGGCAATGACTGCAAG
ATTGGATGTGACATCGTTCCTTGCGGCGAGCGCCATACATAGAATAGACT
GATGACGCCTTTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12467:2..3216+

>mRNA_E-fasciculatus_F_contig12467.1895.1 ID=mRNA_E-fasciculatus_F_contig12467.1895.1|Name=mRNA_E-fasciculatus_F_contig12467.1895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12467:2..3216+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTGGTGAAGAATCTCTCGTGCCCGGATCGAGCCAAGAGGTCGACAT
CCGTGATGGAGGCGGCGAAGGAATCGGAGTTCCAGGAGACGCCAGCGAGG
AGGTACCCCCTGCCGCGGCCGTCAACGACAAGCGGTCCCCGGACGGCTTC
GACAACAAGAAGATGGCTGGTGAAGAATCTCTCGTGCCCGGATCGAGCCA
AGAGGTCGACATCCGTGATGGAGGCGGCGAAGGAATCGGAGTTCCAGGAG
ACGCCAGCGAGGAGGTACCCCCTGCCGCGGCCGTCAACGACAAGCGGTCC
CCGGACGGCTTCGACAACAAGAAGGCTGCCGCTGGGCATATTGAACGGCT
GGACCGAGAGCGCGCGGTCGTCCGATTTCCGTCGAGGCGAGAGAACGATA
TGAGAGGGGCTGCCGCTGGGCATATTGAACGGCTGGACCGAGAGCGCGCG
GTCGTCCGATTTCCGTCGAGGCGAGAGAACGATATGAGAGGGCAAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGCTGTGC
CTTGTCGGCTGGAGGGGAGGGTGGAGAACTGGAAGCCTCCGGCTAACGCT
GACCTCAAGTCTTCGTACCGTTGGAATGACGAACAGAAGCAAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGCTGTGCCTT
GTCGGCTGGAGGGGAGGGTGGAGAACTGGAAGCCTCCGGCTAACGCTGAC
CTCAAGTCTTCGTACCGTTGGAATGACGAACAGAAGGCGAGCATGGACAA
GATTCGAAAGTTCACTCGTGGTGGTACTGCGCTCCGCGAGTTAATTCACG
CGGAGGTGATGCGCCTCGATATTCTTCGCCACGACCTCTTCTGTTGAGCG
AGCATGGACAAGATTCGAAAGTTCACTCGTGGTGGTACTGCGCTCCGCGA
GTTAATTCACGCGGAGGTGATGCGCCTCGATATTCTTCGCCACGACCTCT
TCTGTTGA
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