mRNA_E-fasciculatus_F_contig12464.1893.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: D8LFI3_ECTSI (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI3_ECTSI) HSP 1 Score: 237 bits (605), Expect = 8.820e-71 Identity = 231/269 (85.87%), Postives = 240/269 (89.22%), Query Frame = 1
Query: 1 QILMALNPHARVIGCTYGNVGIHDVLGLMDGQGVADSGTIDDHKDSMSALEANNAATAAXXXXXXXXXXHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHKAVGDGTTTAAKRFGIDNFVYRQRRPFNPERLAELFKSMPSSANLALKGIASGADGSPEAAGGASSSSSDGEALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
+ILMALNPHARVIGCTYGNVGIHDVLG+MDGQGVADSGTIDDHKDSM+ALE NNA A XXXXXXXXXX XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KA+GDGTTTAAKRFGIDNFVYRQRRPFNPERLAEL KSMPSS+NLALKG+ASGAD S +AA GASSS+SD EALR+ALRKVVRSKGFMWLAFSDKAAMYWSHAG
Sbjct: 239 KILMALNPHARVIGCTYGNVGIHDVLGVMDGQGVADSGTIDDHKDSMTALE-NNAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPESGCGSXXXXXXXXXXXXXXXXXXXXXGHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------KAIGDGTTTAAKRFGIDNFVYRQRRPFNPERLAELLKSMPSSSNLALKGVASGADDSAKAADGASSSTSDSEALRMALRKVVRSKGFMWLAFSDKAAMYWSHAG 499
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A836CKL1_9STRA (CobW/HypB/UreG, nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL1_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.540e-17 Identity = 166/304 (54.61%), Postives = 201/304 (66.12%), Query Frame = 1
Query: 1 QILMALNPHARVIGCTYGNVGIHDVLGLMDGQGVADSGTIDDHKDSMSALEANNAATAAXXXXXXXXXX---------HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHKAVGDGTTTAAKRFGIDNFVYRQRRPFNPERLAELFKSMPSSANLALKGIASGADGSPEAAGGASSSS-------------------------SDGEAL-RLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
I+ AL P + +I C+YG V + LG MDGQG+A+ G IDDHK+++SAL ++++++A XXXXXX H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+ TTAA RFG++NFVYR+RRPF+P RL +L K +P + AL + EAA +++ ++ +A+ R ALR++VRSKGF+WLA SD AAMYWSHAG
Sbjct: 300 DIITALAPRSNIITCSYGKVPLASALGCMDGQGIAEFGVIDDHKEALSALTSSDSSSAQEHADXXXXXXXXXXXXXAQHGSACEDAQCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGE--TTAAARFGVNNFVYRRRRPFHPTRLVQLLKLLPIAEGSALTLV--------EAAASVGATTXXXXXXXXXXXXXXXXXXXXXXXXXTEQQAVARQALRRLVRSKGFLWLACSDVAAMYWSHAG 593
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A7S2Y1P1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 5.770e-15 Identity = 143/292 (48.97%), Postives = 167/292 (57.19%), Query Frame = 1
Query: 1 QILMALNPHARVIGCTYGNVGIHDVLGLMDGQGVADSGTIDDHKDSMSALEANNAATAAXXXXXXXXXXHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHKAVGDGTTTAAKRFGIDNFVYRQRRPFNPERLAELFKSMPSSANLALKGIASGADGSPEAAGG----------------------ASSSSSDGE-ALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
+I+ ALNP A + YG V I VLG+M G GVA+ G +DDHK+++ + AA A XXXXXXX XXXXXXXXXXX XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX TTAA RFGI +FVYR+RRPF+P+RL K MP S+NL L+ +A + + +G A S D + +L+ AL +VRSKGF WLA D AAMYWSHAG
Sbjct: 125 EIVRALNPKAAIAPAEYGKVPIRGVLGVMKGNGVAELGVLDDHKEALEQADEMMAAPTAAPTXXXXXXXXXXXXXXXXXXXTCAECGESVGHXXXXXXXXXXXXXXXXXXEGKEAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAD----------------------ATTAATRFGITSFVYRRRRPFHPQRLLSFLKQMPVSSNLLLQDLADTEMDTDDLSGEKRGQTLPGAKRRTRRSTRTTSQADDLSEDSDPSLQAALGCIVRSKGFSWLANMDVAAMYWSHAG 394
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A250X7K0_9CHLO (CobW C-terminal domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X7K0_9CHLO) HSP 1 Score: 80.9 bits (198), Expect = 1.270e-13 Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 1
Query: 517 TTAAKRFGIDNFVYRQRRPFNPERLAEL-FKSMPSSANLALKGIASGADGSPEAAGGASSSSSDGEALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
TTAAKRFGI NFVY +R+PF+P+RL E+ K +P S+N A+ G A SP ++ V+RSKGFMW++ S A YWSHAG
Sbjct: 380 TTAAKRFGIRNFVYSRRKPFHPQRLKEMVLKWLPVSSNKAIDGEAPSLGDSP-------------------IKSVLRSKGFMWMSNSHTTAFYWSHAG 458
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A7R9V869_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V869_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 6.280e-12 Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 517 TTAAKRFGIDNFVYRQRRPFNPERLAEL-FKSMPSSANLALKGIASGADGSPEAAGGASSSSSDGEALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
TTAAKRFGI NFVY +RRPF+P+RL ++ K +P + N A+ G + SP ++ V+RSKGFMW++ S A YWSHAG
Sbjct: 376 TTAAKRFGIYNFVYCRRRPFHPQRLKDMVLKWLPVTHNQAIDGESPALGDSP-------------------IKSVLRSKGFMWMSNSHTTAYYWSHAG 454
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A7S0HTR6_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HTR6_9CRYP) HSP 1 Score: 69.3 bits (168), Expect = 9.750e-10 Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 514 TTTAAKRFGIDNFVYRQRRPFNPERLAELFKSMPSSANLALKGIASGADGSPEAAGGASSSS--SDGEALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
TT+AAK+FGI +FVY +RRPF+P+RL + +P + + + P A G + +DG ++ K++RSKGF+W+A ++A YWSHAG
Sbjct: 324 TTSAAKKFGITSFVYSRRRPFHPQRLMKAILLLPVKVDPETGKMMDSWE-FPHAKNGEKNGDDVTDGSCMK----KIIRSKGFVWVANQHRSAQYWSHAG 418
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A7S2R413_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R413_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.300e-9 Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 511 GTTTAAKRFGIDNFVYRQRRPFNPERLAELFKSMPSSANLALKGIASGADGSPEAAGGASSSSSDGEALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
GTT A GI ++VYR RRPF+P+RLA + +P + G S + + L L +VRSKGF+WLA S +AAMYWSHAG
Sbjct: 400 GTTFA----GIGSYVYRARRPFHPDRLAAFLRHLPVTRGKPSTG---------------SKEDFEKQGLEQTLANIVRSKGFVWLADSHEAAMYWSHAG 479
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A7S3V3R1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V3R1_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.930e-9 Identity = 41/90 (45.56%), Postives = 51/90 (56.67%), Query Frame = 1
Query: 538 GIDNFVYRQRRPFNPERLAELFKSMPSSANLALKGIASGADGSPEAAGGASSSSSDGEALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
GI FVYR RRPFNP+RL + + MP +KG+ S S E A R A ++++R KGF WLA S+ AAMYWSHAG
Sbjct: 449 GIGTFVYRARRPFNPDRLMNVLRLMP-----VVKGLPSQLATSKEEEQSAE--------RRKAFKQILRGKGFCWLADSNIAAMYWSHAG 525
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A7S0TJ65_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJ65_HEMAN) HSP 1 Score: 67.4 bits (163), Expect = 4.370e-9 Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1
Query: 514 TTTAAKRFGIDNFVYRQRRPFNPERLAELFKSMPSSANLALKGIASG---ADGSPEAAGGASSSSSDGEALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
TT+AA RFGI +FVY R PF+P+RL ++ +P + + D + EA + DG + +RK++RSKGF+W+A ++A YWSHAG
Sbjct: 332 TTSAAIRFGITSFVYTARLPFHPKRLMQVIMQLPVKVDPQTGQLVDEWTIPDTTEEAK---RMTVDDGSSEGSVMRKIIRSKGFVWVANQHRSAQYWSHAG 429
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Match: A0A4D9DBW1_9STRA (CobW C-terminal domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBW1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 4.620e-9 Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 517 TTAAKRFGIDNFVYRQRRPFNPERLAELFKSMPSSANLALKGIASGADGSPEAAGGASSS-SSDGEALRLALRKVVRSKGFMWLAFSDKAAMYWSHAG 807
TTA RF I ++Y +R+PF+P R A+L + M +++ A++ + + P+ G A S S+ L L ++RSKGF+WLA +D+AA+Y+S AG
Sbjct: 402 TTARSRFQIGTYIYLRRKPFHPGRFADLLEEMAATSYAAVENVMA-----PKTGGHAPSPPSASSSLLSSVLSGLLRSKGFLWLACTDQAALYFSQAG 494 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12464.1893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12464.1893.1 >prot_E-fasciculatus_F_contig12464.1893.1 ID=prot_E-fasciculatus_F_contig12464.1893.1|Name=mRNA_E-fasciculatus_F_contig12464.1893.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=266bp MALNPHARVIGCTYGNVGIHDVLGLMDGQGVADSGTIDDHKDSMSALEANback to top mRNA from alignment at E-fasciculatus_F_contig12464:499..3856+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12464.1893.1 ID=mRNA_E-fasciculatus_F_contig12464.1893.1|Name=mRNA_E-fasciculatus_F_contig12464.1893.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3358bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12464:499..3856+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12464:499..3856+ >mRNA_E-fasciculatus_F_contig12464.1893.1 ID=mRNA_E-fasciculatus_F_contig12464.1893.1|Name=mRNA_E-fasciculatus_F_contig12464.1893.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1596bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12464:499..3856+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |