mRNA_E-fasciculatus_F_contig12462.1892.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12462.1892.1
Unique NamemRNA_E-fasciculatus_F_contig12462.1892.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12462.1892.1 vs. uniprot
Match: D7FMW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW9_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 1.230e-71
Identity = 183/232 (78.88%), Postives = 190/232 (81.90%), Query Frame = 1 
Query:    1 PNQSSLDTALEWSEEMMLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGTAPPPLSLTAQAQGRHRVAEEPA--GGGLPPAGSKSENGDGEDGRPAAXXXXXXXPSPDAEAAVFLGDHEDYYLRAGTLRRRSSFHAQISDRALDNPLVVGDVGSLQSILEDYLEVDRYQAPESVRGVLGEAKSFFRQEHVAAGAVLADHGSPSSSSSSPEKVYFIGSGSVELQVSG 690
            P  +SLDTALEWSEEMMLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        L+LTAQAQGRH  AEEPA  GGGLPP  SK+E G+GE GRP A       PSP AEA VFL   ED+YL AGTLRRR+SF  QISDRALDNPLVVGDVGSLQ ILEDYLEVDRY APESVR V GEAKSFFRQEHVAAGAVL DH SPSSSSSSPEKVYFIGSGSVE Q+ G
Sbjct:  389 PVFNSLDTALEWSEEMMLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LALTAQAQGRH-AAEEPAEGGGGLPPVESKNEEGEGEQGRPGAAP-----PSP-AEAVVFL---EDHYLSAGTLRRRNSFRTQISDRALDNPLVVGDVGSLQFILEDYLEVDRYHAPESVRSVFGEAKSFFRQEHVAAGAVLVDHDSPSSSSSSPEKVYFIGSGSVEPQIPG 609
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BLAST of mRNA_E-fasciculatus_F_contig12462.1892.1 vs. uniprot
Match: A0A6H5KE91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE91_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 2.620e-70
Identity = 173/230 (75.22%), Postives = 184/230 (80.00%), Query Frame = 1 
Query:    1 PNQSSLDTALEWSEEMMLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGTAPPPLSLTAQAQGRHRVAEEPAGGGLPPAGSKSENGDGEDGRPAAXXXXXXXPSPDAEAAVFLGDHEDYYLRAGTLRRRSSFHAQISDRALDNPLVVGDVGSLQSILEDYLEVDRYQAPESVRGVLGEAKSFFRQEHVAAGAVLADHGSPSSSSSSPEKVYFIGSGSVELQVSG 690
            P  +SLDTALEWSEEMMLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            GLP AGS++E G+GE+GRPA        PSP+AEAAVFLGDHEDYYLRAGTLRR+SSF  QISDRALDNPLVVGDVGSLQSILEDYLEVDRYQAPE VR VLGEAKSFFRQEHVAAGAVLAD+G+PSS+SSS EKVYFIGSGSVELQ+ G
Sbjct:  495 PVFNSLDTALEWSEEMMLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLPLAGSENEKGEGEEGRPATAV-----PSPEAEAAVFLGDHEDYYLRAGTLRRQSSFRTQISDRALDNPLVVGDVGSLQSILEDYLEVDRYQAPEGVRSVLGEAKSFFRQEHVAAGAVLADNGNPSSASSSAEKVYFIGSGSVELQIPG 719
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BLAST of mRNA_E-fasciculatus_F_contig12462.1892.1 vs. uniprot
Match: D8LSJ3_ECTSI (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ3_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 3.610e-69
Identity = 120/141 (85.11%), Postives = 124/141 (87.94%), Query Frame = 1 
Query:  268 ENGDGEDGRPAAXXXXXXXPSPDAEAAVFLGDHEDYYLRAGTLRRRSSFHAQISDRALDNPLVVGDVGSLQSILEDYLEVDRYQAPESVRGVLGEAKSFFRQEHVAAGAVLADHGSPSSSSSSPEKVYFIGSGSVELQVSG 690
            E G+GE GRPAA       P  +AE AVFLGDHEDYYLRAGTLRRRSSF  QISDRALDNPLVVGDVGSLQSILEDYLEVDRYQAPESVR VLGEAKSFFRQE VAAGAVLADHG+PSSSSSSPEKVYFIGSGSVELQ+ G
Sbjct:  126 EEGEGEQGRPAAAA-----PEAEAETAVFLGDHEDYYLRAGTLRRRSSFSTQISDRALDNPLVVGDVGSLQSILEDYLEVDRYQAPESVRSVLGEAKSFFRQERVAAGAVLADHGNPSSSSSSPEKVYFIGSGSVELQIPG 261
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12462.1892.1 vs. uniprot
Match: D8LSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ0_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.420e-62
Identity = 117/141 (82.98%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:  268 ENGDGEDGRPAAXXXXXXXPSPDAEAAVFLGDHEDYYLRAGTLRRRSSFHAQISDRALDNPLVVGDVGSLQSILEDYLEVDRYQAPESVRGVLGEAKSFFRQEHVAAGAVLADHGSPSSSSSSPEKVYFIGSGSVELQVSG 690
            E G+GE GRPAA       P  +AEAAVFLGDHEDYYLRAGTLRRRSSF  QISDR LDNPLVVGDVGSLQ ILEDYLEVDRYQAPESVR VLGEAKSFFR+EHV AGAVLAD+GSPSSS SSPEKVYFIGSGSVELQ+ G
Sbjct:  968 EEGEGEQGRPAAAA-----PEAEAEAAVFLGDHEDYYLRAGTLRRRSSFSTQISDRGLDNPLVVGDVGSLQFILEDYLEVDRYQAPESVRSVLGEAKSFFRREHVVAGAVLADYGSPSSSPSSPEKVYFIGSGSVELQIPG 1103
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12462.1892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMW9_ECTSI1.230e-7178.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE91_9PHAE2.620e-7075.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSJ3_ECTSI3.610e-6985.11Cyclic nucleotide-binding domain-containing protei... [more]
D8LSJ0_ECTSI3.420e-6282.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12462contigE-fasciculatus_F_contig12462:807..3444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue7e-55
Seed eggNOG ortholog2880.D8LSJ0
KEGG koko:K03321
KEGG TC2.A.53.3
EggNOG free text desc.secondary active sulfate transmembrane transporter activity
EggNOG OGsCOG0659@1,KOG0236@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size690
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12462.1892.1prot_E-fasciculatus_F_contig12462.1892.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12462 807..3444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.989257-CDS-E-fasciculatus_F_contig12462:806..9771622927751.989257-CDS-E-fasciculatus_F_contig12462:806..977Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12462 807..977 -
1695995679.7302313-CDS-E-fasciculatus_F_contig12462:806..9771695995679.7302313-CDS-E-fasciculatus_F_contig12462:806..977Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12462 807..977 -
1622927752.0012598-CDS-E-fasciculatus_F_contig12462:2075..21581622927752.0012598-CDS-E-fasciculatus_F_contig12462:2075..2158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12462 2076..2158 -
1695995679.7428112-CDS-E-fasciculatus_F_contig12462:2075..21581695995679.7428112-CDS-E-fasciculatus_F_contig12462:2075..2158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12462 2076..2158 -
1622927752.0112615-CDS-E-fasciculatus_F_contig12462:3008..34441622927752.0112615-CDS-E-fasciculatus_F_contig12462:3008..3444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12462 3009..3444 -
1695995679.753031-CDS-E-fasciculatus_F_contig12462:3008..34441695995679.753031-CDS-E-fasciculatus_F_contig12462:3008..3444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12462 3009..3444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12462.1892.1

>prot_E-fasciculatus_F_contig12462.1892.1 ID=prot_E-fasciculatus_F_contig12462.1892.1|Name=mRNA_E-fasciculatus_F_contig12462.1892.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=230bp
PNQSSLDTALEWSEEMMLDERREEILLRGGGVTASPSLGGSLLRQQQQQQ
ACLAGTAPPPLSLTAQAQGRHRVAEEPAGGGLPPAGSKSENGDGEDGRPA
AATAAAAAPSPDAEAAVFLGDHEDYYLRAGTLRRRSSFHAQISDRALDNP
LVVGDVGSLQSILEDYLEVDRYQAPESVRGVLGEAKSFFRQEHVAAGAVL
ADHGSPSSSSSSPEKVYFIGSGSVELQVSG
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mRNA from alignment at E-fasciculatus_F_contig12462:807..3444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12462.1892.1 ID=mRNA_E-fasciculatus_F_contig12462.1892.1|Name=mRNA_E-fasciculatus_F_contig12462.1892.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2638bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12462:807..3444- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAAACCAATCTAGCCTCGACACCGCACTGGAGTGGTCCGAGGAGATGAT
GCTGGACGAGCGGAGGGAAGAAATCCTTCTTCGCGGCGGGGGGGTCACGG
CTTCCCCGTCCCTCGGCGGTTCCCTCCTCCGACAGCAGCAGCAGCAGCAG
GCGTGCTTAGCGGGGACTGCTCCCCCTCCCCTCTCCCTGACGGCCCAGGC
CCAAGGCCGACACCGCGTGGCGGAAGAACCAGCGGGAGGGGGGTTGCCGC
CGGCCGGGAGCAAGAGCGAGAACGGGGATGGGGAAGACGGCCGACCCGCC
GCCGCCACCGCCGCCGCCGCCGCGCCGTCGCCAGACGCTGAGGCGGCCGT
TTTTCTCGGGGACCACGAGGACTACTACCTCCGTGCCGGGACTCTACGGA
GACGGAGCTCGTTTCACGCTCAGATCTCCGACCGAGGTATAACAGTCGTG
GCTCCGGTATAAGAGGATGTCTCCTGTGAGGGGGCTCCGATATAAGAGGT
TTCCTCTTGAGAGGGGGCTCCGGTAGAACAGGGTCGAAATCGGTGTCACG
GAGTCGACCCGTTATAGGTATGGTTGCGTACTACCGAAAGGGTGCGAGTC
AGCGCACAGGGGTGCGATCGATTTTCAAAGCGTAATTTCTCTCCACAACC
AGGAGGTCACCACTGTCAGAAAATGGCGGTTTTGGGAATATCTCATCGAG
AGCTTTCCTGACAAGTATCAGTGGGCGCTCGCAGCCTCCTGTTTGTGGAG
AAATTACGCTTTGAAAATCGATCGCACCCCTGTGCGCTGACTCGCAACCT
TGCGGTATCTTATTCCGGCATACGGGGGCGCTCCTATAAGAGGGTCAAGG
GCCTTTGTCACACTAGCCTCTCTCATCGCAGCCACGACTGTAAGCAGTTG
TTGGGTGTGCTTTCTGGCAGGCGTGGTTGTGGCAGTTGAGTTTGGGTGGG
TTTGGAGGCGAGCAGTTCGGCTTGGGCGGCATGGTTGGGCCTCGCTTTGT
GCGTGAGTGCGTTCGAGAGGGAGGAGTGCCAGGTGATCTGATGTTGATCT
TGGTCATGCTGGTCGGTGGTGTTAGGTACGTGTAGCTCTCTCTCTCTCTT
TCCCCCCCTCTAGCCCCCTGTATCTCCCTTCCCCCCTCTCTTATCTTGGC
CCCACTTCCCCGTATACTCAGTCGTTGCCCAGTGCTCGTCTTGCGTTCCC
CCGTAGTTCGCTGTCCTCGTGGCTGCCCACCCCTTCCCCGGCGTCCTGAT
TCCCACTCCTCCCTCTCTCGCTGTCGCCGTATGCAGCCTTGGACAACCCT
CTCGTCGTAGGAGATGTTGGATCTTTGCAGTCTATCCTGGAAGACTACCT
CGAAGTTGACCGTTACCAGGTGCGACGATTTTGTTTGTTTGTGCCTCGAG
CATGCGGTGCGATTTTCTCTCTCGCTGTGTACCAGTCGCGGCTCTGATTG
CTTAGCTGTGCAGCATGTTAGGGGGTCACGCTCGTACAATTGGTATTGCT
TGCATCTTTCGCCGCTCTTCTTCTTCTTCTTCTTCTTCTTCTCCCTACAA
TATTTGAAGGCCGATTTTACCCTGTGCGCCTCTGTCATTCCGGGCCGACC
TTGACTACGACCTTGGGGAGGCAGTGCCTTGTGAGTGCGATGAGCTTCCT
TGCCTGACAATGATTGTCAAACGGGTCCTCCTTGTCACTTCTATCCCCCC
CCCCGGTCGCATCCATTCAACAACTCTGGAACCGGGATTTGTACATGTAG
CTCGGTCGCTGGTCTCGAACCCTTTGTTTTGCCCTGCCCGTGCCGCAGAC
GCCTACATATGCACGAACGCGCATCCTTGCTCTTGTACTTATTTTCGTTT
CGTTTCGAGGTCGTTGTTTCCGTAAGCGTGTCCGCTATCTTCTCAGACTG
GAACAAAGACGAGACTTATTTCTCCCGCTCCCGCATTCTTGCGAGTGTCG
GTTTCCCCGGCGCAGTGAGTGCCTCGTGCACGTTCCGTCTGCCTTGGTGT
TTCTTGGGAGCTCTGGCCATGTGTAGCGGCATGAAAGGGCGAGCATTGCA
GATAAACAATTATAAATGCACGAACGTGGTACATGACGACGACGACGAGC
AAACTATAAGACTTCATCCACCGTCACCGTCACAAGTCCAAAAGATGCAC
CGTTTGCTTCCTCCCCCTTCGCCGAATGGTGCTTCGGGCAGCCTGCACAG
AGTGTGGCATCACTTGCAACGGAAACGTTCATGCCTCACACGTTGCTTTT
CAATTTCAATGTTCTCGACAAAACCCAGCGAAACTAAAACCTGAACAACC
CAAAACCGGAAACCGAATCGTATGGAATCCTGCAAAGAGCGGCATCGCTT
GCAATTGGAACGTATTCCTGTCTCACACACTTATTTTATGACCGAAACCC
GGCTGGGTAACGGGAAAACTGTAACCGTAAACCGAACCGGAACGACGTAC
CAAACATCTTACCCCAGGCGCCGGAAAGCGTCCGCGGCGTGCTTGGGGAG
GCCAAGTCTTTCTTCCGGCAGGAGCACGTGGCGGCCGGGGCCGTGCTGGC
TGACCATGGCAGTCCTTCCTCTTCTTCCTCCTCGCCTGAGAAGGTGTACT
TCATCGGATCCGGTAGCGTGGAACTGCAGGTGAGCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12462:807..3444-

>mRNA_E-fasciculatus_F_contig12462.1892.1 ID=mRNA_E-fasciculatus_F_contig12462.1892.1|Name=mRNA_E-fasciculatus_F_contig12462.1892.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12462:807..3444- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAAACCAATCTAGCCTCGACACCGCACTGGAGTGGTCCGAGGAGATGAT
GCTGGACGAGCGGAGGGAAGAAATCCTTCTTCGCGGCGGGGGGGTCACGG
CTTCCCCGTCCCTCGGCGGTTCCCTCCTCCGACAGCAGCAGCAGCAGCAG
GCGTGCTTAGCGGGGACTGCTCCCCCTCCCCTCTCCCTGACGGCCCAGGC
CCAAGGCCGACACCGCGTGGCGGAAGAACCAGCGGGAGGGGGGTTGCCGC
CGGCCGGGAGCAAGAGCGAGAACGGGGATGGGGAAGACGGCCGACCCGCC
GCCGCCACCGCCGCCGCCGCCGCGCCGTCGCCAGACGCTGAGGCGGCCGT
TTTTCTCGGGGACCACGAGGACTACTACCTCCGTGCCGGGACTCTACGGA
GACGGAGCTCGTTTCACGCTCAGATCTCCGACCGAGCCAAACCAATCTAG
CCTCGACACCGCACTGGAGTGGTCCGAGGAGATGATGCTGGACGAGCGGA
GGGAAGAAATCCTTCTTCGCGGCGGGGGGGTCACGGCTTCCCCGTCCCTC
GGCGGTTCCCTCCTCCGACAGCAGCAGCAGCAGCAGGCGTGCTTAGCGGG
GACTGCTCCCCCTCCCCTCTCCCTGACGGCCCAGGCCCAAGGCCGACACC
GCGTGGCGGAAGAACCAGCGGGAGGGGGGTTGCCGCCGGCCGGGAGCAAG
AGCGAGAACGGGGATGGGGAAGACGGCCGACCCGCCGCCGCCACCGCCGC
CGCCGCCGCGCCGTCGCCAGACGCTGAGGCGGCCGTTTTTCTCGGGGACC
ACGAGGACTACTACCTCCGTGCCGGGACTCTACGGAGACGGAGCTCGTTT
CACGCTCAGATCTCCGACCGAGCCTTGGACAACCCTCTCGTCGTAGGAGA
TGTTGGATCTTTGCAGTCTATCCTGGAAGACTACCTCGAAGTTGACCGTT
ACCAGCCTTGGACAACCCTCTCGTCGTAGGAGATGTTGGATCTTTGCAGT
CTATCCTGGAAGACTACCTCGAAGTTGACCGTTACCAGGCGCCGGAAAGC
GTCCGCGGCGTGCTTGGGGAGGCCAAGTCTTTCTTCCGGCAGGAGCACGT
GGCGGCCGGGGCCGTGCTGGCTGACCATGGCAGTCCTTCCTCTTCTTCCT
CCTCGCCTGAGAAGGTGTACTTCATCGGATCCGGTAGCGTGGAACTGCAG
GTGAGCGGCGCGCCGGAAAGCGTCCGCGGCGTGCTTGGGGAGGCCAAGTC
TTTCTTCCGGCAGGAGCACGTGGCGGCCGGGGCCGTGCTGGCTGACCATG
GCAGTCCTTCCTCTTCTTCCTCCTCGCCTGAGAAGGTGTACTTCATCGGA
TCCGGTAGCGTGGAACTGCAGGTGAGCGGC
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