prot_E-fasciculatus_F_contig1246.1890.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1246.1890.1
Unique Nameprot_E-fasciculatus_F_contig1246.1890.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length278
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 3.230e-93
Identity = 211/230 (91.74%), Postives = 213/230 (92.61%), Query Frame = 0 
Query:    1 MSRDRGRGGYGRDDSRXXXXXXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRSRGYSGYAARRSRSPPRRRSRSYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSRSPSPRRERSPSPRNRRRYSD 230
            MSRDRGRGGYGRDDSR   XXXXXXXX  SGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFY+PGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRG YG R RS    RGYSGYAARRSRSPPRRRSRSYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSRSPSPRRE     R+RRRYSD
Sbjct:    1 MSRDRGRGGYGRDDSRGRDXXXXXXXX--SGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGDYG-RGRSXXXXRGYSGYAARRSRSPPRRRSRSYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSRSPSPRREXXXXXRDRRRYSD 227
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.450e-36
Identity = 62/106 (58.49%), Postives = 86/106 (81.13%), Query Frame = 0 
Query:   31 GPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGR 136
            GP  VSLLVRN+++RTR +D++ IF+ +GD+RDVYLP+D+ +++PRGFAFVEFY+  DAA A+D LD Y LD R I+V++AQ++RKRP+EM H E+    GG+GGR
Sbjct:   24 GPDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDYHSKEPRGFAFVEFYDGRDAADAKDALDRYALDNRQIAVVFAQQRRKRPEEMAHTEQQMMGGGWGGR 129
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.990e-29
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 0 
Query:   36 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEM 121
            SLLVRNL++R R D+++RIF  +GD+RDVY+P D+ TQ+PRGFAFVEFY+  DAA A D LD Y +DGR I+V++A+++RK  DEM
Sbjct:   46 SLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQRPRGFAFVEFYDRRDAADALDHLDRYEMDGREIAVVFAKDRRKTADEM 131
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A6A4DL65_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DL65_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.900e-27
Identity = 58/109 (53.21%), Postives = 81/109 (74.31%), Query Frame = 0 
Query:   33 GKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRS 141
            G +SLLVRN++ R R +D+++ F  +G+VRDVY+P DF T++P+GFAFVEF    +A  AR  LDG  +DGR+I V++AQE+RK  D+M  +E+ E RGG G R+RSRS
Sbjct:    5 GGISLLVRNISRRLRPEDIRKEFERYGEVRDVYIPKDFYTKEPKGFAFVEFRSEREADDARRNLDGVRIDGRDIRVVFAQERRKSTDQMREREKTEKRGG-GRRSRSRS 112
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: UPI0019248328 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019248328)

HSP 1 Score: 111 bits (278), Expect = 1.120e-26
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 0 
Query:   36 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRA 137
            SLLVRN+    R ++++  F  FG VRDVY+P DF T  PRGFAFV+F +P DAA A+ R++G    GR ISV++A E RKRP+EM HKER+ G  GYGGR+
Sbjct:   61 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDFHTGTPRGFAFVQFVDPYDAAEAQWRMNGKIFGGREISVVFAAENRKRPEEMQHKERLRGPSGYGGRS 162
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: V4KFI0_EUTSA (RRM domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KFI0_EUTSA)

HSP 1 Score: 113 bits (282), Expect = 3.320e-26
Identity = 69/133 (51.88%), Postives = 88/133 (66.17%), Query Frame = 0 
Query:   36 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRS--RGYSGYAARRSRSPPRRRSRSYS 166
            SLLVRNL    R +D++R F  FG ++D+YLP D+ T  PRGF FV+F +PGDAA A+  +DGY L GR ++V++A+E RK+P EM  +ER    GG   R R R RS  R YS  + R SRSPP RR RS S
Sbjct:   37 SLLVRNLRHDCRQEDLRRSFEPFGPLKDIYLPRDYYTGDPRGFGFVQFVDPGDAAEAKYHMDGYLLLGRELTVVFAEENRKKPTEMRARERG---GGRSNRFRDRRRSPPRYYS-RSPRHSRSPPPRRGRSRS 165
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A7S2BL32_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL32_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.020e-26
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 0 
Query:   33 GKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEG 129
            G+VSLLVRN+++  R +D+   F ++G++RDVY+P+D+ +QKPRGFAFVEFY P DA  AR +LD  ++ GR I V++AQ +RKRP+EM   +R  G
Sbjct:   25 GQVSLLVRNISYDCRKEDLADRFREYGEIRDVYVPVDYYSQKPRGFAFVEFYNPDDAEEARVKLDKTDVHGREIQVMFAQNRRKRPEEMSTMDRNRG 121
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: UPI000BBE6E39 (serine/arginine-rich SC35-like splicing factor SCL33 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE6E39)

HSP 1 Score: 109 bits (273), Expect = 6.470e-26
Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 0 
Query:   36 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRSRGYSGYAARRSRSPPRRRSRSYS 166
            SLLVRNL+   R +D++R F  FG ++D+Y+P D+ T  PRGF FV+F +P DAA A+ ++DGY+L GR ++V++A+E RK+P EM  +ER  GR       RSR R R    Y    SRSPP RR RS S
Sbjct:   39 SLLVRNLSHDCRQEDLRRSFELFGPLKDIYMPRDYYTGDPRGFGFVQFVDPADAAEAKYQMDGYHLLGRELTVVFAEENRKKPTEMRARERGGGRS-----VRSRDRRRSPPRYY---SRSPPPRRGRSRS 161
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: J3LP63_ORYBR (RRM domain-containing protein n=14 Tax=Oryzinae TaxID=1648021 RepID=J3LP63_ORYBR)

HSP 1 Score: 110 bits (274), Expect = 1.360e-25
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 0 
Query:   36 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRG-GYGGRARS----RSRSRGYS 147
            SLLVRNL    R DD++R F  FG ++D+YLP D+ + +PRGF F+++Y+P DAA A+  +DG  L GR ++V++A+E RK+P EM H+ERV  RG  Y  R+RS    RSRS GYS
Sbjct:   38 SLLVRNLRRDCRPDDLRRPFGKFGRLKDIYLPRDYYSGEPRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPSEMRHRERVSNRGRSYDRRSRSPRYSRSRSPGYS 154
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: M1HJ78_PHYPA (Arginine/serine-rich splicing factor SCL42 transcript I n=3 Tax=Physcomitrium patens TaxID=3218 RepID=M1HJ78_PHYPA)

HSP 1 Score: 112 bits (280), Expect = 3.810e-25
Identity = 75/167 (44.91%), Postives = 94/167 (56.29%), Query Frame = 0 
Query:    6 GRGGYGRDDSRXXXXXXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRSRGYSGYAARRSRSPPR--------RRSRS 164
            GRGGYGRD +                    SLLVRN+      +D++  F  +G V+DVYLP D+ T +PRGF FV+F EP DAA A+  LD   + GR I+V++A+E RK+P EM  KER+ GR G+GGR  SRS       Y   RSRSP R        RRSRS
Sbjct:   30 GRGGYGRDSTEPS-----------------SLLVRNIPRDCSAEDLRIPFERYGVVKDVYLPRDYYTGQPRGFGFVQFLEPRDAAEAQYCLDHQLIQGREITVVFAEENRKKPQEMRTKERIRGRPGFGGRRGSRS------SYGRSRSRSPRRFSPSPRGGRRSRS 173
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC3_ECTSI3.230e-9391.74RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V1C3_9STRA4.450e-3658.49Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3HCI8_9STRA2.990e-2960.47Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6A4DL65_9STRA3.900e-2753.21RRM domain-containing protein n=2 Tax=Phytophthora... [more]
UPI00192483281.120e-2655.88serine/arginine-rich SC35-like splicing factor SCL... [more]
V4KFI0_EUTSA3.320e-2651.88RRM domain-containing protein n=2 Tax=Eutrema sals... [more]
A0A7S2BL32_9STRA5.020e-2652.58Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI000BBE6E396.470e-2648.85serine/arginine-rich SC35-like splicing factor SCL... [more]
J3LP63_ORYBR1.360e-2551.28RRM domain-containing protein n=14 Tax=Oryzinae Ta... [more]
M1HJ78_PHYPA3.810e-2544.91Arginine/serine-rich splicing factor SCL42 transcr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 36..109
e-value: 3.7E-20
score: 83.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 37..106
e-value: 4.4E-17
score: 61.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 35..113
score: 17.677
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..127
e-value: 4.3E-26
score: 93.8
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 15..185
NoneNo IPR availablePANTHERPTHR23147:SF149SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30coord: 15..185
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 23..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1246contigE-fasciculatus_F_contig1246:2626..7492 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1246.1890.1mRNA_E-fasciculatus_F_contig1246.1890.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1246 1585..7492 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1246.1890.1 ID=prot_E-fasciculatus_F_contig1246.1890.1|Name=mRNA_E-fasciculatus_F_contig1246.1890.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=278bp
MSRDRGRGGYGRDDSRDRDRDRGGDRGRDSGPGKVSLLVRNLTFRTRVDD
VKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYN
LDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRSRGYSGYA
ARRSRSPPRRRSRSYSRSPPRRRERSYSRGRERRRSRSRSRSRSRSYSRG
GDRSRGRDSRSPSPRRERSPSPRNRRRYSDEEEEDNNNNDTGKGGGGGGG
GYDEEEGGGEEAGHGGGGGEDDDGDQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom