mRNA_E-fasciculatus_F_contig1246.1890.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1246.1890.1
Unique NamemRNA_E-fasciculatus_F_contig1246.1890.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 1.600e-88
Identity = 211/230 (91.74%), Postives = 213/230 (92.61%), Query Frame = 1 
Query:    1 MSRDRGRGGYGRDDSRXXXXXXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRSRGYSGYAARRSRSPPRRRSRSYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSRSPSPRRERSPSPRNRRRYSD 690
            MSRDRGRGGYGRDDSR   XXXXXXXX  SGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFY+PGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRG YG R RS    RGYSGYAARRSRSPPRRRSRSYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSRSPSPRRE     R+RRRYSD
Sbjct:    1 MSRDRGRGGYGRDDSRGRDXXXXXXXX--SGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGDYG-RGRSXXXXRGYSGYAARRSRSPPRRRSRSYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSRSPSPRREXXXXXRDRRRYSD 227
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.430e-33
Identity = 62/106 (58.49%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:   91 GPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGR 408
            GP  VSLLVRN+++RTR +D++ IF+ +GD+RDVYLP+D+ +++PRGFAFVEFY+  DAA A+D LD Y LD R I+V++AQ++RKRP+EM H E+    GG+GGR
Sbjct:   24 GPDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDYHSKEPRGFAFVEFYDGRDAADAKDALDRYALDNRQIAVVFAQQRRKRPEEMAHTEQQMMGGGWGGR 129
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.120e-27
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:  106 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEM 363
            SLLVRNL++R R D+++RIF  +GD+RDVY+P D+ TQ+PRGFAFVEFY+  DAA A D LD Y +DGR I+V++A+++RK  DEM
Sbjct:   46 SLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQRPRGFAFVEFYDRRDAADALDHLDRYEMDGREIAVVFAKDRRKTADEM 131
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A6A4DL65_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DL65_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.060e-25
Identity = 58/109 (53.21%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:   97 GKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRS 423
            G +SLLVRN++ R R +D+++ F  +G+VRDVY+P DF T++P+GFAFVEF    +A  AR  LDG  +DGR+I V++AQE+RK  D+M  +E+ E RGG G R+RSRS
Sbjct:    5 GGISLLVRNISRRLRPEDIRKEFERYGEVRDVYIPKDFYTKEPKGFAFVEFRSEREADDARRNLDGVRIDGRDIRVVFAQERRKSTDQMREREKTEKRGG-GRRSRSRS 112
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: UPI0019248328 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019248328)

HSP 1 Score: 111 bits (278), Expect = 7.620e-25
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:  106 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRA 411
            SLLVRN+    R ++++  F  FG VRDVY+P DF T  PRGFAFV+F +P DAA A+ R++G    GR ISV++A E RKRP+EM HKER+ G  GYGGR+
Sbjct:   61 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDFHTGTPRGFAFVQFVDPYDAAEAQWRMNGKIFGGREISVVFAAENRKRPEEMQHKERLRGPSGYGGRS 162
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: V4KFI0_EUTSA (RRM domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KFI0_EUTSA)

HSP 1 Score: 113 bits (282), Expect = 2.640e-24
Identity = 69/133 (51.88%), Postives = 88/133 (66.17%), Query Frame = 1 
Query:  106 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRS--RGYSGYAARRSRSPPRRRSRSYS 498
            SLLVRNL    R +D++R F  FG ++D+YLP D+ T  PRGF FV+F +PGDAA A+  +DGY L GR ++V++A+E RK+P EM  +ER    GG   R R R RS  R YS  + R SRSPP RR RS S
Sbjct:   37 SLLVRNLRHDCRQEDLRRSFEPFGPLKDIYLPRDYYTGDPRGFGFVQFVDPGDAAEAKYHMDGYLLLGRELTVVFAEENRKKPTEMRARERG---GGRSNRFRDRRRSPPRYYS-RSPRHSRSPPPRRGRSRS 165
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A7S2BL32_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL32_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.160e-24
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:   97 GKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEG 387
            G+VSLLVRN+++  R +D+   F ++G++RDVY+P+D+ +QKPRGFAFVEFY P DA  AR +LD  ++ GR I V++AQ +RKRP+EM   +R  G
Sbjct:   25 GQVSLLVRNISYDCRKEDLADRFREYGEIRDVYVPVDYYSQKPRGFAFVEFYNPDDAEEARVKLDKTDVHGREIQVMFAQNRRKRPEEMSTMDRNRG 121
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: UPI000BBE6E39 (serine/arginine-rich SC35-like splicing factor SCL33 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE6E39)

HSP 1 Score: 109 bits (273), Expect = 3.840e-24
Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:  106 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRSRGYSGYAARRSRSPPRRRSRSYS 498
            SLLVRNL+   R +D++R F  FG ++D+Y+P D+ T  PRGF FV+F +P DAA A+ ++DGY+L GR ++V++A+E RK+P EM  +ER  GR       RSR R R    Y    SRSPP RR RS S
Sbjct:   39 SLLVRNLSHDCRQEDLRRSFELFGPLKDIYMPRDYYTGDPRGFGFVQFVDPADAAEAKYQMDGYHLLGRELTVVFAEENRKKPTEMRARERGGGRS-----VRSRDRRRSPPRYY---SRSPPPRRGRSRS 161
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: J3LP63_ORYBR (RRM domain-containing protein n=14 Tax=Oryzinae TaxID=1648021 RepID=J3LP63_ORYBR)

HSP 1 Score: 110 bits (274), Expect = 8.440e-24
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  106 SLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRG-GYGGRARS----RSRSRGYS 441
            SLLVRNL    R DD++R F  FG ++D+YLP D+ + +PRGF F+++Y+P DAA A+  +DG  L GR ++V++A+E RK+P EM H+ERV  RG  Y  R+RS    RSRS GYS
Sbjct:   38 SLLVRNLRRDCRPDDLRRPFGKFGRLKDIYLPRDYYSGEPRGFGFIQYYDPEDAADAKYHMDGQILLGREVTVVFAEENRKKPSEMRHRERVSNRGRSYDRRSRSPRYSRSRSPGYS 154
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BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Match: A0A7C8ZQP0_OPUST (RRM domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZQP0_OPUST)

HSP 1 Score: 108 bits (270), Expect = 2.450e-23
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:   19 RGGYGRDDSRXXXXXXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARS 417
            RGGYGR   R                G  SLLVRNL    R +D++R F+ FG ++D+YLP D+ T +PRGF FV++ +P DAA A+ R+DG    GR ++V++A E RK+P EM  +ER  GRG Y  R RS
Sbjct:   12 RGGYGR---RRRSPSPRGRYGGHERDGPTSLLVRNLRRDCRPEDLRRPFSQFGPLKDIYLPRDYYTGEPRGFGFVQYVDPADAADAKYRMDGQVFQGRELTVVFAAENRKKPVEMRARERGTGRGRYSDRRRS 141
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1246.1890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC3_ECTSI1.600e-8891.74RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V1C3_9STRA1.430e-3358.49Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3HCI8_9STRA3.120e-2760.47Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6A4DL65_9STRA3.060e-2553.21RRM domain-containing protein n=2 Tax=Phytophthora... [more]
UPI00192483287.620e-2555.88serine/arginine-rich SC35-like splicing factor SCL... [more]
V4KFI0_EUTSA2.640e-2451.88RRM domain-containing protein n=2 Tax=Eutrema sals... [more]
A0A7S2BL32_9STRA3.160e-2452.58Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI000BBE6E393.840e-2448.85serine/arginine-rich SC35-like splicing factor SCL... [more]
J3LP63_ORYBR8.440e-2451.28RRM domain-containing protein n=14 Tax=Oryzinae Ta... [more]
A0A7C8ZQP0_OPUST2.450e-2345.11RRM domain-containing protein (Fragment) n=1 Tax=O... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1246contigE-fasciculatus_F_contig1246:1585..7492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.4
Seed ortholog evalue8.7e-76
Seed eggNOG ortholog2880.D7FRC3
Preferred nameSCL25A
KEGG koko:K12891,ko:K12900
KEGG Pathwayko03040,ko05168,map03040,map05168
GOsGO:0000184,GO:0000244,GO:0000245,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000381,GO:0000387,GO:0000395,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005845,GO:0005846,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006376,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016482,GO:0016604,GO:0016607,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0033119,GO:0034248,GO:0034518,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035061,GO:0036260,GO:0042221,GO:0042795,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045292,GO:0045934,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048024,GO:0048025,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050686,GO:0050733,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051082,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1903313,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-26_002620.1
Exons5
Model size1875
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1246.1890.1prot_E-fasciculatus_F_contig1246.1890.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1246 2626..7492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.890745-UTR-E-fasciculatus_F_contig1246:1584..26251622927751.890745-UTR-E-fasciculatus_F_contig1246:1584..2625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1246 1585..2625 -
1695995679.6648974-UTR-E-fasciculatus_F_contig1246:1584..26251695995679.6648974-UTR-E-fasciculatus_F_contig1246:1584..2625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1246 1585..2625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.9030359-CDS-E-fasciculatus_F_contig1246:2625..29591622927751.9030359-CDS-E-fasciculatus_F_contig1246:2625..2959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 2626..2959 -
1695995679.677817-CDS-E-fasciculatus_F_contig1246:2625..29591695995679.677817-CDS-E-fasciculatus_F_contig1246:2625..2959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 2626..2959 -
1622927751.9159539-CDS-E-fasciculatus_F_contig1246:3378..35421622927751.9159539-CDS-E-fasciculatus_F_contig1246:3378..3542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 3379..3542 -
1695995679.6898699-CDS-E-fasciculatus_F_contig1246:3378..35421695995679.6898699-CDS-E-fasciculatus_F_contig1246:3378..3542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 3379..3542 -
1622927751.9320836-CDS-E-fasciculatus_F_contig1246:4226..43161622927751.9320836-CDS-E-fasciculatus_F_contig1246:4226..4316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 4227..4316 -
1695995679.6986709-CDS-E-fasciculatus_F_contig1246:4226..43161695995679.6986709-CDS-E-fasciculatus_F_contig1246:4226..4316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 4227..4316 -
1622927751.9445117-CDS-E-fasciculatus_F_contig1246:4890..49181622927751.9445117-CDS-E-fasciculatus_F_contig1246:4890..4918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 4891..4918 -
1695995679.7093344-CDS-E-fasciculatus_F_contig1246:4890..49181695995679.7093344-CDS-E-fasciculatus_F_contig1246:4890..4918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 4891..4918 -
1622927751.9589162-CDS-E-fasciculatus_F_contig1246:7274..74921622927751.9589162-CDS-E-fasciculatus_F_contig1246:7274..7492Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 7275..7492 -
1695995679.719363-CDS-E-fasciculatus_F_contig1246:7274..74921695995679.719363-CDS-E-fasciculatus_F_contig1246:7274..7492Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 7275..7492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1246.1890.1

>prot_E-fasciculatus_F_contig1246.1890.1 ID=prot_E-fasciculatus_F_contig1246.1890.1|Name=mRNA_E-fasciculatus_F_contig1246.1890.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=278bp
MSRDRGRGGYGRDDSRDRDRDRGGDRGRDSGPGKVSLLVRNLTFRTRVDD
VKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYEPGDAAHARDRLDGYN
LDGRNISVLYAQEKRKRPDEMVHKERVEGRGGYGGRARSRSRSRGYSGYA
ARRSRSPPRRRSRSYSRSPPRRRERSYSRGRERRRSRSRSRSRSRSYSRG
GDRSRGRDSRSPSPRRERSPSPRNRRRYSDEEEEDNNNNDTGKGGGGGGG
GYDEEEGGGEEAGHGGGGGEDDDGDQA*
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mRNA from alignment at E-fasciculatus_F_contig1246:1585..7492-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1246.1890.1 ID=mRNA_E-fasciculatus_F_contig1246.1890.1|Name=mRNA_E-fasciculatus_F_contig1246.1890.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5908bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1246:1585..7492- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCCGCGACAGGGGGAGAGGCGGGTACGGCAGGGACGACAGCCGCGA
CCGCGACCGCGACCGTGGCGGCGACCGCGGGAGAGACTCCGGGCCGGGAA
AGGTCTCCCTGCTCGTCCGCAACCTGACCTTCCGCACTCGAGTGGACGAT
GTGAAGCGTATCTTCACCGACTTCGGGGACGTGCGCGACGTCTACCTTCC
CCTCGACTTCGGCACACAGTGAGTGCAGTCCACCGCGGCCGGCCCCGCTC
GGTTGAACGCGACAGCGAACGAAGCTCTCTCTCTCTCTCTCTTCTTTTGG
CTTTCCTCACATTTTTTTTCAACTTTTTTTTTCTCGGGAACCATCTCTAT
TCTACAGCAGTCGTGCCAAGTCCATGTAAACAGGGAGACAGAGAGAAAAT
AGAAATTGCAGCAGTCGATAGGGGGAGTGCGAGATGTAATACTGCTGTAC
CCCTCCTCCTTAGACCGCCTTCGAGACAGGGACTGCTGACTGCTGATGTG
CTCGTGAAGCACCCGTGCCTCTGCCGCTTCGATAATGCCATAACAGCAGT
CAGCGTCTTTTGTCTCCCCTCCTGCAAAGAGCTTGTCTCCCCTCCTGCAA
AGAGCGTGTGTGCTTTTTTTTTTTTAGCATCGACAGCAAGCGCTAACCGG
CTGACCAATGAAAAGACGTCAGTCTCAGTGCGGCGGAAAACTATCTGCTG
TGTGTGTTTATTTGCGCATCAGTGTTTTTTTACGTCGTCGTGTAGGCTTG
TTTAGGGCATGCTTGGTCGACTATTTCAGGAGTACAAGTACAATAGTGAC
TATACTAGGTCTGCCCGAGCGCGTTTGTGTGCCCATGATGCATCCTGTTC
TACGCCGCAGGGAGATTCAATAAACTAAAGTAGCTCTCCGGTAAAGAGAT
AAAACTGGTGCGGGGCATCAAGTACACTACATTGCGCAGTCGGTGAAAAG
ATAGATACAGACAGCGACATTTTTGTCACCACTTTGGGTATGCCCTTTGA
TTGTGTCCACGGAAGGCGTCCGTGTCAGTTCCCAGTGCGGGTGCTAGAGG
GTGCTGCCGGCCACGGAATGATTCATAACAACGTCGCCACCTACAAGCCC
ACAACGAGATAAATGTAGACGCTGTATGCATGGATGTGGATGTGTTTGGC
ATCGCTTGGACCTATTGTAAGAGCTGCAAGTTTGCTTCGATCTCGTCGCA
TGATGGATCAGATCAATCCCACGAGGCATTACACAATGTGCATGAGCACA
TGCCCATAGGTAAGTAAACGAGCCCTCCACCACGCCAGGGGCCGGCCTAA
TTTTGGCTCCTACTGGGTGTGGATGTGTTTTGACCTCCTTGAGAAGGGAG
GAAGTCCTTCTAGAGTTGATGCGGGAGAAAACCTGCTGTACATACGCGCA
CGATTTTGACTATCGCTTCCTTCCTCTTTTTTTTTTCTTCTTGTGTGTTA
CCGTCTTTTCGACGCTCTCACGAGAAAGACGGACAACTCTTTCGTGTGGT
GGGAGGCGATAAGAAGGTCGAACGAACGAACGAAGTGCCCAAGTCAAGTC
AAGTCAAGTCAAGTCAAGAAGCCCCCCCCCCTCGGCCCCGAGTACTAGAA
GAATCGAAGAAACCACCTCTCTCTGTTTTGTCCTCCTCCCCACGACTGAA
GCCGAGCCGATTCAAGCCAAGCCCCCAAGTCAAGCGTCTGTCTCAATTAG
TGTTGGCGTTTTTCAACCCCAAGACGCCCCTGCTGGGCCAACAACCTTGT
TGAGAGGGGGTGAGTGGGAGCGGGGATGGACCTCAAGACAAAGAGCCATG
GATGTTATTCTCAAGAGAGGGCAAATCCAAGTTTCCAAGCCCGAGCCAGG
AAACAAGAGGGCGGGGGAGGGGAGGGAAGAGAAGAGAAACGGGAGAAGGA
AAAGAGGGGGGTCGGCCGACCAGTCCCTTGGTCCCCTCGAGCTCGTCCGA
GCGCCAGCGGGGTTACATGGGTTTCTCTTTGAAGTCGCGGAAATGAGAAG
GGGGGTGCATGCACAAGGTCCAGTCAAGCCAATCAAGAGAAGCAAGCTTG
CGAGAGTATATCCAAGATCCGACAGAGAAAGAAGAATCCCCGTCCCCCCC
TCTGTTGCTGCTGCCGGCGCAGAGGAGCATCAAGGCGGAACGGTGATTCG
GTCATGTGCCAGGCTGTATATGGTCTTGGTAGAATTTGAATATTCTTTGC
TAATACCGAAGTTTTGCATTTGTTGACAGGGATAAGAATGAGCGAGGAGT
CTAGCGGGTTGTAATTCTCGTTTCGAGTATCGCAAAGCGCTTGTCAATTC
AACATCCCGCACCCCCCCCCATGCTGTTACCTCTTTTAGGGGGCAGTTTG
TTTGTTGGTTTGAGTTGTTTCGGCCGAGAAGTTTGTACCGTCCTCCGCCT
TCGTTCTCGCCTGCTGTGCTTGGCCCCTCACTACTTCTGCCCCCTTTTCT
TGTGCACCCTTGCCCTCGTCCGCCCCCCGCAACGCGTTCGTCTTACTCTT
TCGACTGCGACGTGACTGGACCAAATGTGACACTGCTCGATGTTGCCTTT
GGTCGTGGTGGTCTGGGCGAACAGGAAGCCTCGCGGCTTCGCTTTTGTGG
AGGTGAGAAGAGGACACAGCCGGCAAGGAGAAACGCCGTTTCATGTTTTT
GTTCCTTGTTTTTCGGTGGTATATGTCGTGTGGGCGGTAGCCGTTACTTT
TTTTGTGAAGCGACAGCAGTGAAGGCACACAGCAGTACACTTCACTTGTC
GGTTTGCGTCTGTTGCGGTCACGAAGTGTCTCGTGGGATAAGGCGACCGC
TCCACGTGTCTCTCTGATTAATAAACACCGGTATACCAGACGGACCCGTG
CGGAGGTTCTGTTGGAGGTACATACATGAACCGCTTTGGGGGGAAATGTG
CCTGCTGTGTCTGGTTGAATGAGAAGCCGAGGATATCACACGCAACATAG
GTAACACGGACCGCCGTTCGTTTCTTCTCTTTTTCGTGTCTGACACATGT
CGCACACGTGTCTTGTCGGCATAAACGGTTGGTCGAGTGCTCTCTACCGC
TGTGCTTCCTTTCGCACATACTGGTATGCCAGCAACCAGAGATAGGCGAG
GATAAGGATGGACAATGAACCCCGATTGTGTCTTGGTGCGGTGCCCCTTG
TGCTTGCTCCCTCCCTCCCTCTTCAGTTCTACGAGCCTGGAGACGCGGCC
CACGCGAGGGACCGCCTCGATGGCTACAACCTGGACGGCCGCAACATCTC
CGTCCTCTATGCTCAGGTGCGCGCAATGGTAGTTGTTTGTCGTTTGCCAC
CGATGTATGGGTGCTCCATTTACATTTATTGGGACCCCCGGGACCCCCAA
ATACATGCCCCTCCCCCCCCCTCCCCAACCCAGATGTTCATGATTTGGGA
AAGGTAGGGCTCCATCACTTTCAAAAGATGACTGCAAGTTGAAACACCCT
GCAATCGCTTCTCATTCGTGTATGCACTCGTTCGAATACCTTCGATCGAA
GTTCCGCACTTTTCTGTGGAAATGAAGATGATAGGGGACCGAAGGCAAGG
TTAAGGTTGGTTTTCTCGGCGACTCAGACGATGCGGCCCAACTTGGGAGT
TTGTTCTTGAGCAACTTGTGGTGTTCATGCGCAGCTGACCGTCTTGGATG
GCGTTATTTGGACAGCGACCTGCACATTTTGTCCCCCCTCTTCTCCGCTC
CGCCAACTCGAAGTTGTCCGTGAATGATAAGTTGGTTTATCATATTTCTT
GTTATATGGATTAGATCTCCCAAGTTTCGGTATTTTCTGTTCTTTGTACC
TCTCTGCTGCCACGCCTCTCGTGCAAGCACTACCGCTGCACCCTCCCCTT
GTCCACGTTTTTAGCGATAATGTTCCTGATTGTAGCTGGCCCCTTGCTTG
ACCTGCGCAATAATTAATCGCCCGCGCACGACCCGCACGCCCGCTAACAG
GAGAAGCGCAAGAGGCCTGATGAGATGGTCCACAAGGAAAGGGTCGAGGG
CCGCGGAGGCTACGGCGGAAGGGCGCGCTCCAGATCGCGCTCGCGCGGGT
ACAGCGGGTACGCGGCCCGCCGCTCCAGGTCTCCCCCCCGACGCCGCTCC
CGGTCTTACTCGAGGTGTGTAGTGGTGGTGTGCGTTGCGCCTTCCTTTCA
CCTGCGGCACCGGTAAATGGGTATATTTTCCTCCCCGCGCCCCGCCGGAG
GATATGTGTGATTCAAGTTTAAGCGAGACGCCCAAGCCGCATGCAGTTTT
CCCGCCCGGCAAAGTGGAACTCTTGGTAAAACACGATAATCTCTGGTGGT
GGAATAAATCTCCCTCCGGTGCTTTCGGTGTTGGTGGAAAGCGAAGTGGT
GCTCTCTTTTTTCTTTGTTGTCCAGAGCTGGAGAAACGAATTATTCCCTC
CTCCCTGTGTTTTGCTCCGTCCTCTCCCGTCTGTGTTGCTGCCTTCCTTC
CTTCCTTCCTTCCCTGTGCCTGTTTCCCCACTAACTTTTTTCTTCTCTCT
TGCCGACGCTGGGGGCTCCGCAATACCGCACAGGTCCCCTCCCCGCAGGC
GGGAGCGGAGCTACTCCAGGGGCCGCGAGCGCCGCCGCTCGAGGTCCCGC
TCCCGGAGCCGCTCCCGCAGCTACAGCCGCGGAGGCGACAGAAGCAGGGG
ACGGGACTCGCGCAGCCCCTCCCCCCGCCGCGAGCGGTCCCCCTCCCCGA
GAAACCGCCGGAGGTACAGCGACGAGGAAGAGGAGGATAACAACAACAAC
GACACTGGCAAGGGTGGTGGCGGCGGCGGCGGCGGCTACGATGAGGAGGA
AGGAGGTGGCGAGGAGGCTGGTCACGGCGGTGGCGGAGGAGAAGATGATG
ACGGCGACCAGGCTTAAGTTGTTACAATAGGCGGCGGCGGTGTGCTGGTT
GTTGGTTTGCGCGGCCGCGTGCGTGCTGTGGCAGCTGGTGGGTTTTGAAG
CCTACAGGCCGCTGGTGGTAGATTCTCCAGTTGCGCAGCCGTGTGGTTGA
TCGAATCGTGCGCAGCAGAAGGTCGCGCTTCCAGACGCTGCTGCTTATTG
AAGCAGGGCTGTGTACTGGTAATTATGACGGAAAAGAGAAAAGGAAAAAG
ATACAGTACAGCAGTAGTGGTAGAGAAGAAGCAAGGTCACATTTACGCGA
ATATGCCGGTCGTTTTTTTTTTACTGTTGAGGTGGGGGAATAGTACATCT
ACCAAGCGAGAGCGCATAGGAGACAGACTCCCTGTAGCGATGTTGAGTTG
TCCTGATGGCCTTTTTAGCGGATCTTGGTCTCGAGTAACGTCGGGAGGAG
CCATGTCCCTTGCGTGCGGTGTCGGGACACATGTGTCGGTGTCTGTCGGG
CGTGTGCTCAAGTCGCGTACCGTGAAGCGGACTTTCGGGTTTGTGATTGT
CAACAGGCACCGCACCCAGCGCAAGGTGCGGCAGTCACGTCTGTATGCCT
TCGCCTGTATGCCGTCGCCTTTTGTTGTCGCAAAGCTGTTCGTGTATGCA
GCTCACTCGCGGGTTACAGTAGTTAGGATTTACGTTCTTTGGCTGGCGTA
CCGTAGATAGTGTGTTGCTGTCGGCAAGTACGACGTGTAATTTGAGGTTT
ATGCCATCGAAGTGATGGGTCGTTGGAAGCTGGCGTTTTTCGGTCACCGG
AGCTATACAGCACAAGGAACCTCTGGTGGTGCCTGAGGCTCGTTTGTTGT
TTCGTCTTTTGAGGGTAACCCAAACATGGACCTGGAAAGAAAAGTCTTGA
CACATGTTCTTGAGCCAATGGATGGACAGATATGGGTTGTTCATGTCATC
AGAACTCTGTCCCTGGAAGGACTGACAGCTAATGTCCACAAGCTTCCTCT
TTCTCCCAGGTTAGTGAATGAACGTTATACGATGCCGCGCGTGGTGAATC
CATCTGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1246:1585..7492-

>mRNA_E-fasciculatus_F_contig1246.1890.1 ID=mRNA_E-fasciculatus_F_contig1246.1890.1|Name=mRNA_E-fasciculatus_F_contig1246.1890.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1668bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1246:1585..7492- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCCGCGACAGGGGGAGAGGCGGGTACGGCAGGGACGACAGCCGCGA
CCGCGACCGCGACCGTGGCGGCGACCGCGGGAGAGACTCCGGGCCGGGAA
AGGTCTCCCTGCTCGTCCGCAACCTGACCTTCCGCACTCGAGTGGACGAT
GTGAAGCGTATCTTCACCGACTTCGGGGACGTGCGCGACGTCTACCTTCC
CCTCGACTTCGGCACACAATGAGCCGCGACAGGGGGAGAGGCGGGTACGG
CAGGGACGACAGCCGCGACCGCGACCGCGACCGTGGCGGCGACCGCGGGA
GAGACTCCGGGCCGGGAAAGGTCTCCCTGCTCGTCCGCAACCTGACCTTC
CGCACTCGAGTGGACGATGTGAAGCGTATCTTCACCGACTTCGGGGACGT
GCGCGACGTCTACCTTCCCCTCGACTTCGGCACACAGAAGCCTCGCGGCT
TCGCTTTTGTGGAGGAAGCCTCGCGGCTTCGCTTTTGTGGAGTTCTACGA
GCCTGGAGACGCGGCCCACGCGAGGGACCGCCTCGATGGCTACAACCTGG
ACGGCCGCAACATCTCCGTCCTCTATGCTCAGTTCTACGAGCCTGGAGAC
GCGGCCCACGCGAGGGACCGCCTCGATGGCTACAACCTGGACGGCCGCAA
CATCTCCGTCCTCTATGCTCAGGAGAAGCGCAAGAGGCCTGATGAGATGG
TCCACAAGGAAAGGGTCGAGGGCCGCGGAGGCTACGGCGGAAGGGCGCGC
TCCAGATCGCGCTCGCGCGGGTACAGCGGGTACGCGGCCCGCCGCTCCAG
GTCTCCCCCCCGACGCCGCTCCCGGTCTTACTCGAGGAGAAGCGCAAGAG
GCCTGATGAGATGGTCCACAAGGAAAGGGTCGAGGGCCGCGGAGGCTACG
GCGGAAGGGCGCGCTCCAGATCGCGCTCGCGCGGGTACAGCGGGTACGCG
GCCCGCCGCTCCAGGTCTCCCCCCCGACGCCGCTCCCGGTCTTACTCGAG
GTCCCCTCCCCGCAGGCGGGAGCGGAGCTACTCCAGGGGCCGCGAGCGCC
GCCGCTCGAGGTCCCGCTCCCGGAGCCGCTCCCGCAGCTACAGCCGCGGA
GGCGACAGAAGCAGGGGACGGGACTCGCGCAGCCCCTCCCCCCGCCGCGA
GCGGTCCCCCTCCCCGAGAAACCGCCGGAGGTACAGCGACGAGGAAGAGG
AGGATAACAACAACAACGACACTGGCAAGGGTGGTGGCGGCGGCGGCGGC
GGCTACGATGAGGAGGAAGGAGGTGGCGAGGAGGCTGGTCACGGCGGTGG
CGGAGGAGAAGATGATGACGGCGACCAGGCTTAAGTCCCCTCCCCGCAGG
CGGGAGCGGAGCTACTCCAGGGGCCGCGAGCGCCGCCGCTCGAGGTCCCG
CTCCCGGAGCCGCTCCCGCAGCTACAGCCGCGGAGGCGACAGAAGCAGGG
GACGGGACTCGCGCAGCCCCTCCCCCCGCCGCGAGCGGTCCCCCTCCCCG
AGAAACCGCCGGAGGTACAGCGACGAGGAAGAGGAGGATAACAACAACAA
CGACACTGGCAAGGGTGGTGGCGGCGGCGGCGGCGGCTACGATGAGGAGG
AAGGAGGTGGCGAGGAGGCTGGTCACGGCGGTGGCGGAGGAGAAGATGAT
GACGGCGACCAGGCTTAA
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