mRNA_E-fasciculatus_F_contig1246.1891.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1246.1891.1
Unique NamemRNA_E-fasciculatus_F_contig1246.1891.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1246.1891.1 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 8.110e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2 
Query:  381 RTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 467
            RTRVDDVKRIFTDFGDVRDVYLPLDFGTQ
Sbjct:   43 RTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1246.1891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRC3_ECTSI8.110e-9100.00RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1246contigE-fasciculatus_F_contig1246:6894..7361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.8183873-CDS-E-fasciculatus_F_contig1246:6893..73011622927751.8183873-CDS-E-fasciculatus_F_contig1246:6893..7301Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 6894..7301 +
1695995679.644002-CDS-E-fasciculatus_F_contig1246:6893..73011695995679.644002-CDS-E-fasciculatus_F_contig1246:6893..7301Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 6894..7301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.831265-UTR-E-fasciculatus_F_contig1246:7301..73611622927751.831265-UTR-E-fasciculatus_F_contig1246:7301..7361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1246 7302..7361 +
1695995679.6539476-UTR-E-fasciculatus_F_contig1246:7301..73611695995679.6539476-UTR-E-fasciculatus_F_contig1246:7301..7361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1246 7302..7361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1246.1891.1prot_E-fasciculatus_F_contig1246.1891.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1246 6894..7301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1246.1891.1

>prot_E-fasciculatus_F_contig1246.1891.1 ID=prot_E-fasciculatus_F_contig1246.1891.1|Name=mRNA_E-fasciculatus_F_contig1246.1891.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp
CRRGDKLFAGGETKDADCCYGIIEAAEARVLHEHISSQQSLSRRRSKEEG
YSSITSRTPPIDCCNFYFLSVSLFTWTWHDCCRIEMVPEKKKVEKKCEES
QKKRERERASFAVAFNRAGPAAVDCTHCVPKSRGR*
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mRNA from alignment at E-fasciculatus_F_contig1246:6894..7361+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1246.1891.1 ID=mRNA_E-fasciculatus_F_contig1246.1891.1|Name=mRNA_E-fasciculatus_F_contig1246.1891.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1246:6894..7361+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCAGGAGGGGAGACAAGCTCTTTGCAGGAGGGGAGACAAAAGACGCTGA
CTGCTGTTATGGCATTATCGAAGCGGCAGAGGCACGGGTGCTTCACGAGC
ACATCAGCAGTCAGCAGTCCCTGTCTCGAAGGCGGTCTAAGGAGGAGGGG
TACAGCAGTATTACATCTCGCACTCCCCCTATCGACTGCTGCAATTTCTA
TTTTCTCTCTGTCTCCCTGTTTACATGGACTTGGCACGACTGCTGTAGAA
TAGAGATGGTTCCCGAGAAAAAAAAAGTTGAAAAAAAATGTGAGGAAAGC
CAAAAGAAGAGAGAGAGAGAGAGAGCTTCGTTCGCTGTCGCGTTCAACCG
AGCGGGGCCGGCCGCGGTGGACTGCACTCACTGTGTGCCGAAGTCGAGGG
GAAGGTAGACGTCGCGCACGTCCCCGAAGTCGGTGAAGATACGCTTCACA
TCGTCCACTCGAGTGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1246:6894..7361+

>mRNA_E-fasciculatus_F_contig1246.1891.1 ID=mRNA_E-fasciculatus_F_contig1246.1891.1|Name=mRNA_E-fasciculatus_F_contig1246.1891.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1246:6894..7361+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCAGGAGGGGAGACAAGCTCTTTGCAGGAGGGGAGACAAAAGACGCTGA
CTGCTGTTATGGCATTATCGAAGCGGCAGAGGCACGGGTGCTTCACGAGC
ACATCAGCAGTCAGCAGTCCCTGTCTCGAAGGCGGTCTAAGGAGGAGGGG
TACAGCAGTATTACATCTCGCACTCCCCCTATCGACTGCTGCAATTTCTA
TTTTCTCTCTGTCTCCCTGTTTACATGGACTTGGCACGACTGCTGTAGAA
TAGAGATGGTTCCCGAGAAAAAAAAAGTTGAAAAAAAATGTGAGGAAAGC
CAAAAGAAGAGAGAGAGAGAGAGAGCTTCGTTCGCTGTCGCGTTCAACCG
AGCGGGGCCGGCCGCGGTGGACTGCACTCACTGTGTGCCGAAGTCGAGGG
GAAGGTAGTGCAGGAGGGGAGACAAGCTCTTTGCAGGAGGGGAGACAAAA
GACGCTGACTGCTGTTATGGCATTATCGAAGCGGCAGAGGCACGGGTGCT
TCACGAGCACATCAGCAGTCAGCAGTCCCTGTCTCGAAGGCGGTCTAAGG
AGGAGGGGTACAGCAGTATTACATCTCGCACTCCCCCTATCGACTGCTGC
AATTTCTATTTTCTCTCTGTCTCCCTGTTTACATGGACTTGGCACGACTG
CTGTAGAATAGAGATGGTTCCCGAGAAAAAAAAAGTTGAAAAAAAATGTG
AGGAAAGCCAAAAGAAGAGAGAGAGAGAGAGAGCTTCGTTCGCTGTCGCG
TTCAACCGAGCGGGGCCGGCCGCGGTGGACTGCACTCACTGTGTGCCGAA
GTCGAGGGGAAGGTAG
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