mRNA_E-fasciculatus_F_contig1246.1889.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1246.1889.1
Unique NamemRNA_E-fasciculatus_F_contig1246.1889.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1246.1889.1 vs. uniprot
Match: A0A6H5KS62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS62_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 9.270e-8
Identity = 59/102 (57.84%), Postives = 61/102 (59.80%), Query Frame = -2 
Query:   11 GLSPVADGCDLAAKTESCSSAXXXXXXXXXXXXXXXXGSKISSCQPSARPDNTLASSTSATTGSGVDNXXXXXXXXXXXXXXXXXXDWFKIVDVDITGVSAG 316
            G SPVA+GCDLA KTE CSSA                   IS C PS R  N+LA  T A        XXXXXXXXXXXXXXXXXX WFKIVDVD T VSAG
Sbjct:    5 GSSPVANGCDLAVKTERCSSATFSTRHQQSTSAGGGDDGNISLCHPSVRSTNSLA--TEAAXXXXXXXXXXXXXXXXXXXXXXXXXXWFKIVDVDTTEVSAG 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1246.1889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KS62_9PHAE9.270e-857.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1246contigE-fasciculatus_F_contig1246:716..1104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size389
Cds size360
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.7729049-UTR-E-fasciculatus_F_contig1246:715..7441622927751.7729049-UTR-E-fasciculatus_F_contig1246:715..744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1246 716..744 +
1695995679.6237576-UTR-E-fasciculatus_F_contig1246:715..7441695995679.6237576-UTR-E-fasciculatus_F_contig1246:715..744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1246 716..744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.7839541-CDS-E-fasciculatus_F_contig1246:744..11041622927751.7839541-CDS-E-fasciculatus_F_contig1246:744..1104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 745..1104 +
1695995679.6339276-CDS-E-fasciculatus_F_contig1246:744..11041695995679.6339276-CDS-E-fasciculatus_F_contig1246:744..1104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1246 745..1104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1246.1889.1prot_E-fasciculatus_F_contig1246.1889.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1246 745..1104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1246.1889.1

>prot_E-fasciculatus_F_contig1246.1889.1 ID=prot_E-fasciculatus_F_contig1246.1889.1|Name=mRNA_E-fasciculatus_F_contig1246.1889.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
MSTSTILNQSSSPLPPSSSPCWCVSSLVLSTPLPVVADVELARVLSGLAL
GWHEEILLPSPPAVVDCCCRRVEHAAEEQLSVLAARSQPSATGDKPAMCV
SSTGECFGGGVGLARARES*
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mRNA from alignment at E-fasciculatus_F_contig1246:716..1104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1246.1889.1 ID=mRNA_E-fasciculatus_F_contig1246.1889.1|Name=mRNA_E-fasciculatus_F_contig1246.1889.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=389bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1246:716..1104+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCTCGTCGTCCTGCCGACACGCCCGTGATGTCCACATCGACGATTTTG
AACCAGTCATCATCACCGCTACCGCCATCATCATCACCATGCTGGTGCGT
GTCGTCGTTGGTATTATCAACTCCGCTACCAGTAGTGGCTGACGTAGAAC
TGGCGAGAGTATTGTCAGGCCTCGCGCTGGGTTGGCACGAAGAAATTTTA
CTGCCGTCTCCTCCGGCAGTGGTCGACTGCTGCTGTCGGCGTGTCGAGCA
TGCCGCTGAGGAACAACTCTCAGTCTTGGCTGCCAGGTCACAGCCATCAG
CTACGGGAGATAAACCCGCCATGTGTGTCAGTAGTACGGGGGAATGCTTT
GGGGGTGGTGTCGGTCTTGCGCGCGCGAGAGAGAGCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1246:716..1104+

>mRNA_E-fasciculatus_F_contig1246.1889.1 ID=mRNA_E-fasciculatus_F_contig1246.1889.1|Name=mRNA_E-fasciculatus_F_contig1246.1889.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1246:716..1104+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCACATCGACGATTTTGAACCAGTCATCATCACCGCTACCGCCATC
ATCATCACCATGCTGGTGCGTGTCGTCGTTGGTATTATCAACTCCGCTAC
CAGTAGTGGCTGACGTAGAACTGGCGAGAGTATTGTCAGGCCTCGCGCTG
GGTTGGCACGAAGAAATTTTACTGCCGTCTCCTCCGGCAGTGGTCGACTG
CTGCTGTCGGCGTGTCGAGCATGCCGCTGAGGAACAACTCTCAGTCTTGG
CTGCCAGGTCACAGCCATCAGCTACGGGAGATAAACCCGCCATGTGTGTC
AGTAGTACGGGGGAATGCTTTGGGGGTGGTGTCGGTCTTGCGCGCGCGAG
AGAGAGCTAAATGTCCACATCGACGATTTTGAACCAGTCATCATCACCGC
TACCGCCATCATCATCACCATGCTGGTGCGTGTCGTCGTTGGTATTATCA
ACTCCGCTACCAGTAGTGGCTGACGTAGAACTGGCGAGAGTATTGTCAGG
CCTCGCGCTGGGTTGGCACGAAGAAATTTTACTGCCGTCTCCTCCGGCAG
TGGTCGACTGCTGCTGTCGGCGTGTCGAGCATGCCGCTGAGGAACAACTC
TCAGTCTTGGCTGCCAGGTCACAGCCATCAGCTACGGGAGATAAACCCGC
CATGTGTGTCAGTAGTACGGGGGAATGCTTTGGGGGTGGTGTCGGTCTTG
CGCGCGCGAGAGAGAGCTAA
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