mRNA_E-fasciculatus_F_contig12456.1887.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12456.1887.1
Unique NamemRNA_E-fasciculatus_F_contig12456.1887.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: A0A6H5JET5_9PHAE (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET5_9PHAE)

HSP 1 Score: 503 bits (1296), Expect = 4.930e-175
Identity = 271/325 (83.38%), Postives = 288/325 (88.62%), Query Frame = 1
Query:    1 MLMLAQPSVNSASVSVVLSGGGSFGSTLAGRIATAPIPVEVRSSPVLENWEGLKDVCTGADTVYLVSALDLPPSPNDSDLQAFTAGVSRVVDCCLECGVEGLVFTSSSSVFSSAEQAQGSTEHEREEDVTARAVARAEARILDASGATSTSPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKVLRVPTTIALSAAWMAELLCKVG 975
            ML+LAQPS +SASVSVVL GGGSFGSTLAGRIATA IP EVRSSP+LENWEGLK+VCTGADTVYL+SALDLPPSPNDSDLQAFTAGVSRVVDCCLECGVEGLVFTSSSSVFSSAE+AQG TEHE E+DV AR VARAEAR+LDASGATS  PS LHTCALRPAAF+YG SEKDGPLHRAL WVGWGLNRVAVG    EDGGVKVDMVH+DNLAEAHLLAGA+LKK RA  DAP A  DVG  V  ADAEQR GPGS      K+EAAPACAG+AYDVTDGQPRNPQAFLDEILDGLGFATSK+LRVPT++AL  A +AELLCKVG
Sbjct:    1 MLILAQPSASSASVSVVLHGGGSFGSTLAGRIATAAIPAEVRSSPLLENWEGLKEVCTGADTVYLLSALDLPPSPNDSDLQAFTAGVSRVVDCCLECGVEGLVFTSSSSVFSSAEKAQGPTEHEEEDDVKARTVARAEARVLDASGATS--PSHLHTCALRPAAFIYGLSEKDGPLHRALLWVGWGLNRVAVGPKCPEDGGVKVDMVHVDNLAEAHLLAGAKLKK-RAETDAPNAMVDVGAGVEGADAEQRRGPGS------KSEAAPACAGRAYDVTDGQPRNPQAFLDEILDGLGFATSKLLRVPTSVALLVARVAELLCKVG 316          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: D7FV37_ECTSI (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV37_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 1.710e-150
Identity = 232/273 (84.98%), Postives = 244/273 (89.38%), Query Frame = 1
Query:  157 LKDVCTGADTVYLVSALDLPPSPNDSDLQAFTAGVSRVVDCCLECGVEGLVFTSSSSVFSSAEQAQGSTEHEREEDVTARAVARAEARILDASGATSTSPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKVLRVPTTIALSAAWMAELLCKVG 975
            +  VCTGADTVYL+SALDLPPSPNDSDLQAFTAGVSRV++CCLECGVEGLVFTSSSSVFSSAE+AQG TEHE E+D+ ARAVARAEAR+LDASGATS  PSRLHTCALRPAAFVYG SEKDGPLHRALSWVGWGL+RVAVG    EDGGVKVDMVHLDNLAEAHLLAGARLKKKRA  DAP A  DVG DVG A AEQR GPGS      K EAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSK+LRVPTT+AL AAW+AELLCKVG
Sbjct:   18 ISQVCTGADTVYLLSALDLPPSPNDSDLQAFTAGVSRVIECCLECGVEGLVFTSSSSVFSSAEKAQGPTEHEGEDDMKARAVARAEARVLDASGATS--PSRLHTCALRPAAFVYGTSEKDGPLHRALSWVGWGLDRVAVGPKCPEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAETDAPNAMVDVGADVGGAAAEQRRGPGS------KTEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKLLRVPTTVALLAAWVAELLCKVG 282          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: D8LSA6_ECTSI (3Beta_HSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA6_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.110e-25
Identity = 78/182 (42.86%), Postives = 98/182 (53.85%), Query Frame = 1
Query:  463 LHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQ------------PRNPQAFLDEILDGLGFATSKVLRVPTTIALSAAWMAELLCKV 972
            L+TCALRP   VYGA  KD PL RALSW+GWGLNRV +   G  +   K DM+   NL +A +LAG +L +  A                     Q GG G S  +       PAC+G++Y VTDGQ            P   QAF+D +L+GL F TSKVLR+P   AL+ AW  EL+CK+
Sbjct:   47 LYTCALRPG-LVYGAG-KDEPLLRALSWMGWGLNRVTL--RGLPE--AKSDMIFFQNLIDATVLAGTQLAEGAAGA-------------------QAGGAGWSTRKG------PACSGQSYCVTDGQRGGGDGDGGGVQPGGLQAFMDGVLEGLDFTTSKVLRLPVFFALAIAWAMELVCKM 197          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: A0A3M7KZD4_AUXPR (3Beta_HSD domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KZD4_AUXPR)

HSP 1 Score: 81.6 bits (200), Expect = 9.750e-14
Identity = 81/251 (32.27%), Postives = 106/251 (42.23%), Query Frame = 1
Query:  256 GVSRVVDCCLECGVEGLVFTSS-SSVFSSAEQAQGSTEH-----EREEDVTARAVARAEARILDASGATSTSPS------RLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKVLRVPTTIALSAAWMAELLCKV 972
            G   VV  C+ CGV  LV+TS+ ++VF   E   G         +   D  +R  A AE  +L A GA            RLHT ALRPAA +YGA E+   L R +     G  +   G   +       DMVH+DNL EAH+LA   L                        A   GG                 AG+AY ++DG P N   F + +L GLGF T   LR+P  +    AW+ EL+ +V
Sbjct:   74 GTDNVVAACIACGVPSLVYTSTYNTVFGGVEIVAGDESLPLFPLDAHCDAYSRTKALAEQAVLAADGARHVGKDGDPGRGRLHTTALRPAA-IYGAGERRH-LPRTVENARRGWYKCTFGKPSS-----LTDMVHVDNLVEAHVLAARSL------------------------AHANGGE---------------AAGQAYFISDGSPINMFRFFEPLLVGLGFPTPH-LRLPLLVVYCLAWLTELIWQV 277          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: A0A8J1U9Q7_OWEFU (Ofus.G101475 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U9Q7_OWEFU)

HSP 1 Score: 70.5 bits (171), Expect = 6.860e-10
Identity = 67/248 (27.02%), Postives = 111/248 (44.76%), Query Frame = 1
Query:  256 GVSRVVDCCLECGVEGLVFTSSSSVFSSAEQAQGSTEH------EREEDVTARAVARAEARILDASGATSTSPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKVLRVPTTIALSAAWMAELLCKVGGE 981
            G   V+  C++  VE LV+TS+ +V    +  +   E       ++  D  ++  + AE  +L  +GA   +  +LHTCALR A  VYG  E+   L R ++++  G   +  G++        VD +H+DNL +AH+LAG  L  +R  I                                         G+AY ++D +P N   F   +++GLG+   K LRVP  +    A++ EL+ +V G+
Sbjct:  106 GTENVIKACIQHNVEHLVYTSTYNVVFGGQVIENGDETLPYLPMDKHSDHYSKTKSIAEQSVLYRNGAILENGLKLHTCALRLAG-VYGPGEQRH-LPRIMNYIERGYFSMIYGADKT-----LVDFLHVDNLVQAHVLAGKGLTSQRDHI---------------------------------------AQGQAYFISDDKPVNNFLFFKPMVEGLGYTYPK-LRVPLGLVYFVAFLTELIHRVLGK 306          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: UPI0014256310 (short-chain dehydrogenase/reductase family 42E member 1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256310)

HSP 1 Score: 69.7 bits (169), Expect = 1.270e-9
Identity = 80/317 (25.24%), Postives = 128/317 (40.38%), Query Frame = 1
Query:   40 VSVVLSGGGSFGSTLAGR----------IATAPIPVEVRSSPV------LENWEGLKDVCTGADTVYLVSALDLPP----SPNDSDLQAFTAGVSRVVDCCLECGVEGLVFTSSSSVFSSAEQAQGSTEH-------EREEDVTARAVARAEARILDASGATSTSPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKV 909
            V V+++GG  F     GR          +    +P+E  S  +      + N + + ++C G   V+ +++  +       P D        G   V++ C    V  LV+TSS +V    +  +G+TE        E   D  +R    AE  +L A+G  +     LHTCALRP   +YG  E+     RA+S +  G     +G   A      V+ VH+DN+  AH+LAG  L +++                              K RS         AG+ Y +TDG P N   F   +++GLG+   ++
Sbjct:   26 VDVLITGGAGFFGVHLGRALHLIGAHVTLFDINLPIEDFSPEIKLVKGDIRNKQLVDELCRGKSCVFHMASYGMSGPEMLKPTDFIESINVGGTDNVIEACCRHNVPRLVYTSSIAVVFGGKPIEGATEETCPVLPLEEFTDDYSRTKCIAEKNVLAANGRKTEGGHVLHTCALRPPG-LYGVGERRH-FPRAVSAMEAGQLLFTIGGLEA-----LVEFVHVDNIVNAHILAGDALTQQK------------------------------KQRS---------AGEVYFITDGDPVNNWEFFRPLIEGLGYTFPRI 296          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: UPI00201EB207 (short-chain dehydrogenase/reductase family 42E member 1-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EB207)

HSP 1 Score: 67.8 bits (164), Expect = 5.340e-9
Identity = 70/248 (28.23%), Postives = 110/248 (44.35%), Query Frame = 1
Query:  256 GVSRVVDCCLECGVEGLVFTSSSSVFSSAEQAQGSTE------HEREEDVTARAVARAEARILDASGATSTSPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKVLRVPTTIALSAAWMAELLCKVGGE 981
            G   VV  C +C V  LV+TS+ +V    ++ +   E       ++  +  +     +E ++L A+G+ +   S LHTCALR A  VYG  E+   + R +S++  GL  VAV + GA+D    VD +H+DNL +AH LAG  L + R  I                                        AG+AY + D +P N   F   +++GLG+    V  +P       A++ E++  V G 
Sbjct:  103 GTENVVKACRDCNVTRLVYTSTYNVVFGGQEIRDGDESLPYLTEDKFTEYYSLTKMHSEKKVLGANGSQTADGSVLHTCALRLAG-VYGPGEQRH-IPRIVSYLEQGL--VAV-TYGAKDS--LVDFLHVDNLVQAHTLAGRGLSRDRGHI---------------------------------------AAGQAYFICDDKPINNFEFFRPLIEGLGYRYPTV-NLPLLPVFYFAFITEIVHSVIGR 303          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: UPI001E1D8807 (short-chain dehydrogenase/reductase family 42E member 1-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D8807)

HSP 1 Score: 67.4 bits (163), Expect = 7.410e-9
Identity = 72/284 (25.35%), Postives = 122/284 (42.96%), Query Frame = 1
Query:  139 LENWEGLKDVCTGADTVYLVSALDLPPSP--NDSDLQAFTAG-VSRVVDCCLECGVEGLVFTSSSSVFSSAEQAQGSTEH------EREEDVTARAVARAEARILDASGATSTSPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKVLRVPTTIALSAAWMAELL 963
            L N E +  + T  D VY +++  +      N   ++A   G    V+  C    V  LV+TS+ +V    +      E        ++ D  +R  + AE ++L A G+ + S + LHTCALR AA VYG  E+   + R + ++  GL  +   ++  +D       +H++NLA+AH LAG  L K ++ +                                        AG+AY V+D  P N  +F   ++ GLG+    + R+P ++    A++ E L
Sbjct:   73 LTNREMVTSLFTDVDCVYHMASYGMSGREQLNRRRIEAVNVGGTENVIQACKTNDVTRLVYTSTYNVIFGGQTINDGDESLPYLPLNKQPDHYSRTKSIAEQKVLKADGSKTDSGNTLHTCALRLAA-VYGPGEQRH-IPRIVDYIEKGLFSIIYETDTLQD------FLHVENLAQAHELAGKALTKDKSYV---------------------------------------AAGQAYFVSDDAPINTFSFFGPLITGLGYPMPSI-RLPISVIYFVAFLTEWL 308          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: A0A8B8CKP7_CRAVI (short-chain dehydrogenase/reductase family 42E member 1-like isoform X1 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CKP7_CRAVI)

HSP 1 Score: 65.1 bits (157), Expect = 4.180e-8
Identity = 69/270 (25.56%), Postives = 115/270 (42.59%), Query Frame = 1
Query:  175 GADTVYLVSALDLPPSP--NDSDLQAFTA-GVSRVVDCCLECGVEGLVFTSSSSVFSSAEQAQGSTEH------EREEDVTARAVARAEARILDASGATSTSPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFATSKVLRVPTTIALSAAWMAE 957
            GAD VY +++  +      N   ++A    G   V+  CL+  ++ LV+TS+ +V    ++ +   E        +  D  +R  + AE ++L A+      P RLHTCALR A  VYG  E    + R ++ V  G  +   G +  +D       +H+DNL +AH+LAG  L + + ++                                        AG+AY ++DG P N   F   +L GLG+    +  VP ++    A++ E
Sbjct:   82 GADCVYHMASYGMSGREQLNTKLIEAVNIQGTENVIQACLKHQIKRLVYTSTYNVIFGGQEIRDGEESLPYLPLNQHPDHYSRTKSIAEQKVLAAN-----EPGRLHTCALRLAG-VYGMGELRH-IPRTVTTVQSGAMKALFGKDSLQD------FLHIDNLVQAHILAGQALLESKKSV---------------------------------------AAGQAYFISDGAPINTFEFFRPLLSGLGYPLPNIY-VPVSLVYVIAFIIE 298          
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Match: UPI001EE542B0 (short-chain dehydrogenase/reductase family 42E member 1-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE542B0)

HSP 1 Score: 62.4 bits (150), Expect = 3.450e-7
Identity = 68/260 (26.15%), Postives = 114/260 (43.85%), Query Frame = 1
Query:  139 LENWEGLKDVCTGADTVYLVSALDLPPSP--NDSDLQAFT-AGVSRVVDCCLECGVEGLVFTSSSSVFSSAEQAQGSTE------HEREEDVTARAVARAEARILDASGATSTSPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDGGVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQRGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLG 891
            + +   ++    G D VY +++  +      N   +Q     G   V+  C +C V  LV+TS+ +V    ++ +   E       ++  +  +     +E ++L ASG+ +   S L+TCALR A  VYG  E+   + R +S++  GL  VAV + GA+D    VD +H+DNL +AH+LAG  L + +  I                                        AG+AY + D +P N   F   +++GLG
Sbjct:   61 IRDASAVRSAVEGVDVVYHMASYGMSGREQLNKKLIQEVNIGGTENVLKACHDCNVTRLVYTSTYNVVFGGQEIRDGDESLPYLTEDKFTEYYSLTKMHSEKKVLGASGSQTADGSVLYTCALRLAG-VYGPGEQRH-IPRIVSYLEQGL--VAV-TYGAKDS--LVDFLHVDNLVQAHMLAGRGLSENKGHI---------------------------------------AAGQAYFICDDKPINNFQFFRPLIEGLG 274          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12456.1887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JET5_9PHAE4.930e-17583.383Beta_HSD domain-containing protein n=1 Tax=Ectoca... [more]
D7FV37_ECTSI1.710e-15084.983Beta_HSD domain-containing protein n=1 Tax=Ectoca... [more]
D8LSA6_ECTSI2.110e-2542.863Beta_HSD domain-containing protein n=1 Tax=Ectoca... [more]
A0A3M7KZD4_AUXPR9.750e-1432.273Beta_HSD domain-containing protein n=2 Tax=Auxeno... [more]
A0A8J1U9Q7_OWEFU6.860e-1027.02Ofus.G101475 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI00142563101.270e-925.24short-chain dehydrogenase/reductase family 42E mem... [more]
UPI00201EB2075.340e-928.23short-chain dehydrogenase/reductase family 42E mem... [more]
UPI001E1D88077.410e-925.35short-chain dehydrogenase/reductase family 42E mem... [more]
A0A8B8CKP7_CRAVI4.180e-825.56short-chain dehydrogenase/reductase family 42E mem... [more]
UPI001EE542B03.450e-726.15short-chain dehydrogenase/reductase family 42E mem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12456contigE-fasciculatus_F_contig12456:431..3865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score443.0
Seed ortholog evalue1.2e-121
Seed eggNOG ortholog2880.D7FV37
EggNOG free text desc.3-beta-hydroxy-delta5-steroid dehydrogenase activity
EggNOG OGsCOG0451@1,KOG1430@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4499
Ec32 orthologEc-12_005040.1
Exons7
Model size984
Cds size984
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.5917566-CDS-E-fasciculatus_F_contig12456:430..5951622927751.5917566-CDS-E-fasciculatus_F_contig12456:430..595Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 431..595 +
1695995679.5110767-CDS-E-fasciculatus_F_contig12456:430..5951695995679.5110767-CDS-E-fasciculatus_F_contig12456:430..595Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 431..595 +
1622927751.6022215-CDS-E-fasciculatus_F_contig12456:745..8361622927751.6022215-CDS-E-fasciculatus_F_contig12456:745..836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 746..836 +
1695995679.522846-CDS-E-fasciculatus_F_contig12456:745..8361695995679.522846-CDS-E-fasciculatus_F_contig12456:745..836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 746..836 +
1622927751.6146681-CDS-E-fasciculatus_F_contig12456:1025..12031622927751.6146681-CDS-E-fasciculatus_F_contig12456:1025..1203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 1026..1203 +
1695995679.5313566-CDS-E-fasciculatus_F_contig12456:1025..12031695995679.5313566-CDS-E-fasciculatus_F_contig12456:1025..1203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 1026..1203 +
1622927751.6250522-CDS-E-fasciculatus_F_contig12456:1860..19471622927751.6250522-CDS-E-fasciculatus_F_contig12456:1860..1947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 1861..1947 +
1695995679.539803-CDS-E-fasciculatus_F_contig12456:1860..19471695995679.539803-CDS-E-fasciculatus_F_contig12456:1860..1947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 1861..1947 +
1622927751.6373193-CDS-E-fasciculatus_F_contig12456:2681..27961622927751.6373193-CDS-E-fasciculatus_F_contig12456:2681..2796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 2682..2796 +
1695995679.5492792-CDS-E-fasciculatus_F_contig12456:2681..27961695995679.5492792-CDS-E-fasciculatus_F_contig12456:2681..2796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 2682..2796 +
1622927751.6472342-CDS-E-fasciculatus_F_contig12456:2993..32461622927751.6472342-CDS-E-fasciculatus_F_contig12456:2993..3246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 2994..3246 +
1695995679.557843-CDS-E-fasciculatus_F_contig12456:2993..32461695995679.557843-CDS-E-fasciculatus_F_contig12456:2993..3246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 2994..3246 +
1622927751.6559653-CDS-E-fasciculatus_F_contig12456:3770..38651622927751.6559653-CDS-E-fasciculatus_F_contig12456:3770..3865Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 3771..3865 +
1695995679.565726-CDS-E-fasciculatus_F_contig12456:3770..38651695995679.565726-CDS-E-fasciculatus_F_contig12456:3770..3865Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12456 3771..3865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12456.1887.1prot_E-fasciculatus_F_contig12456.1887.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12456 431..3865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12456.1887.1

>prot_E-fasciculatus_F_contig12456.1887.1 ID=prot_E-fasciculatus_F_contig12456.1887.1|Name=mRNA_E-fasciculatus_F_contig12456.1887.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=328bp
MLMLAQPSVNSASVSVVLSGGGSFGSTLAGRIATAPIPVEVRSSPVLENW
EGLKDVCTGADTVYLVSALDLPPSPNDSDLQAFTAGVSRVVDCCLECGVE
GLVFTSSSSVFSSAEQAQGSTEHEREEDVTARAVARAEARILDASGATST
SPSRLHTCALRPAAFVYGASEKDGPLHRALSWVGWGLNRVAVGSNGAEDG
GVKVDMVHLDNLAEAHLLAGARLKKKRAAIDAPTAAADVGTDVGRADAEQ
RGGPGSSKTRSSKNEAAPACAGKAYDVTDGQPRNPQAFLDEILDGLGFAT
SKVLRVPTTIALSAAWMAELLCKVGGE*
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mRNA from alignment at E-fasciculatus_F_contig12456:431..3865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12456.1887.1 ID=mRNA_E-fasciculatus_F_contig12456.1887.1|Name=mRNA_E-fasciculatus_F_contig12456.1887.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3435bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12456:431..3865+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGATGTTAGCGCAGCCAAGCGTCAACAGCGCCAGCGTTAGCGTTGT TTTATCTGGTGGGGGAAGCTTTGGATCGACCCTCGCGGGCAGAATTGCAA CAGCACCAATCCCGGTCGAGGTTAGGTCCTCGCCCGTGCTGGAGAACTGG GAAGGGCTGAAAGACGTAAGCACACGGTGGGAGCAGTGTGGTGTTCTTGT GTGAGGGAGTGCAACAGCAGTGCAACAAGAAAAAAGCAAAACACGTCACA GCTAATTGTTCATATAGGCACAATCCACACTGCTCATAGGTTCAGATCCC TGCGTTATTTCACAGGTCTGCACGGGCGCCGACACCGTGTATTTGGTCTC GGCGCTTGATCTCCCTCCCTCGCCAAACGACTCCGACTTGCAAGCCTTCA CGGCAGGTGAACGAGCGTGGGCCTTGCAGCTGACGCGAACGGTTGCTTGC ACAAACCGTATTCGAGTCCGGTAGAAACCACATAAATGCCGCGCGTATTG TTGCTATGTACCTCTCTCGCACTGCCCCTTACCTTCCAACCCAAAACCGA TTTGTTTCGACACTTGTCCTCGTCTTGGACGCACAACACGACCAGGTGTG AGTAGGGTGGTTGATTGCTGCCTGGAGTGCGGGGTAGAGGGCTTGGTGTT CACAAGCTCGTCCAGCGTGTTTTCGTCTGCGGAGCAAGCGCAAGGGTCAA CCGAGCATGAACGAGAAGAGGATGTCACGGCGCGGGCCGTGGCCAGGGCT GAAGCTAGAATCCTCGACGCCAGGTTTGGAATCTAAACAACATTCTGTCA AGGGACTTGGTCGTCTTCTCGAAAAAGTGTTAACGACAATCTATCCAGAT AGCTTGACGAAGTTCGTACGAAGTACGTGACATTCACCTGGGAAGTTGCG TACTTGGAGTTCTGCCATGACCGTAGTGTACGATGTAAACATGGGAAATG GACACGAATATCTACAAGAGCAAAACAGCTTCTGTCATTGACGGCACTAA TGTTTGTTTTGTGCCCGTCTAAAGATAGCTATATATACCGAAGATGTCGA GCGCCGAAAATATGCCTCTCTTGGTCCATACAATTGTATCCCCTTTGCAG TCCTTCTTCCCTCCCCTTGGTGGTTTGGGGTGGTGGTTTGGCCTCGAGAC AACTGGAACAGAGTGAGGTCGCGATGAAATATCTACGTAATACATTTTGT TGCAGCCGACCCCTTGATGCCTGTGTTTCGATACGAAACGATTCTCGCAT CACATCGTCCGGCGTCCGTCCGTCCGTCCGTCCTTCCATCTGTCTGTCTG TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGCCTGTCTGTC TGTTTGCCTGTCTTCCTGTTTGTCTGTCTGCCTGGCTCTGTTGTGCTATT CCTACCTCCGACTTTTTGCTGGTTGTCCAGTGGTGCGACATCAACATCCC CGTCGCGCTTGCACACCTGCGCTCTGCGGCCTGCTGCCTTCGTCTACGGG GCATCGGAGAAGGATGGGTGAGCGAAGAAGCTCCACTTATGCTGCGTTGT TTCTTGGATGCGGTCCACGGCTGTCGCTGCCGCTGTTGTGTAATCGTCTT GTTTTTGTAATGGCGGCGTGTCCTGGCGCCGTGGGTACAAAGCACGCAGA GCCGTTTGGACAAAGTCCGGTCCACGCCACACCTTCGTCGGAGGCGAAAA GGCTAACCCGAGGCGAACGGCTGGGGGGAAAGAGGCAAACAGGCTTGTGT TCGCGCAGGTGTAGTATCAATTTTTGTCCTATGGTATGGTGGTCGTTGCC TCACAGCGGGCGGAACACGACGTCTCCTACTAGCACGGAATCAACGCCAC CTTTGCAGTCCGGAACTCTTATCCCTGTCCTACATTGCTGTAGCTCAGAT GCAAGATTTAGCACTTTGCTATTGGAGAAGACACGAGCGCGCAGACGTTC GTCGTTACCAATACCTCGTTTGATTCCATACGACATCAAAATCAACATTA ACGCCCGGATGCCGTCACGGGCAGCCGCCCTTGAGGTGCCGGGTGAGAGA AAATCATCATCATCATGATCAGCAGCAGCAGCGTGCGCTGGTTACAAGGA ACATTGTTGGCGTTTGTTCTTGACGACGCCTCCTGCGGGTCGGCTGCTAG TTTCGTTTTCTTCCCCGTGGCTCAGACCTCTCCGAGACCCTCACGATAAC AAGCCTCTGTTGACACAGCTCCACCCTTCAATCTCTCCTCCCGCGGTACA GGCCGTTGCATCGAGCCCTGTCGTGGGTGGGCTGGGGTTTGAATCGGGTG GCGGTGGGGTCCAACGGCGCGGAAGACGGCGGCGTCAAGGTGGACATGGT GCACTTAGATAACCTGGTGGGTGCGTCTTCGGGGAATGGAGGTTATTGTA TTGGGTTTACGTTGTTTTGGCGTCTCACCACAACAAACAAGTGATGGTTT GATGTGAAATTTCGGCTTCATGATCGTACCTACCCCGAAGACACGCTCTC GTTATACTACCGTGCTCTCTTCTTTGCCCCGTACTGCTGCCCTTGGGTGC CCCGGAAGCACAGGCGGAGGCACACTTGCTTGCCGGCGCAAGACTCAAGA AGAAGAGAGCAGCGATAGACGCACCAACCGCCGCGGCGGACGTTGGGACA GACGTTGGGCGTGCGGACGCAGAGCAAAGAGGAGGCCCCGGCAGCAGCAA GACCCGCAGCAGCAAGAACGAAGCTGCTCCGGCATGTGCCGGAAAGGCCT ACGATGTTACGGACGGTCAGCCCCGCAACCCGCAGGCGTTCCTGGATGAG ATTCTTGACGGACTCGGTGCGGAGACCCTACAGTAGTACTCTCGAAGGCA GGGGGTGGGGGGGGCAGTGGAGCAGGGAGGGAGGAGGGGGCATGATCTAG TCGTGCCTGTATACAAGTAGTGCTGTGGCAAGCGCGACAGACCCTCGCAG TGCTACAAGGCCGCGGGATGTATGTAACCCTTGAGAATGTTTAACGACCA AGACGAATGGGGACGGCCGGGGACAATCATCTCATGTGCGGGGGTTAATG GGGGCCAGCGAAATATTCATACCTATGCTGCACTGCCCGTCGTGCGCTTG CTCTATGCTACAACGCGCTTCTTCTCTACCGATTGGCATGTCACGAGGTT ACGAGCGTACCTCAGCCGTACCGAAACAAGTCGAACGAACGAGCTATTAT CCACTTGTAGGAAGTTTTGACAATGTCGACCGGTTTGTGTGTCGACACCC ACTTCTCTTAGTCCCCCCCCGCCCGCCTTTTGGCCTTTTGGTTGGATGTG CTTGACTGCCTTCTACGGTGCCTGTTACGGGTACTGGCAGGTTTTGCGAC GTCTAAGGTTCTTCGGGTGCCGACCACGATCGCCCTTTCGGCTGCCTGGA TGGCGGAGTTGTTGTGCAAGGTGGGTGGCGAGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12456:431..3865+

>mRNA_E-fasciculatus_F_contig12456.1887.1 ID=mRNA_E-fasciculatus_F_contig12456.1887.1|Name=mRNA_E-fasciculatus_F_contig12456.1887.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1968bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12456:431..3865+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGATGTTAGCGCAGCCAAGCGTCAACAGCGCCAGCGTTAGCGTTGT
TTTATCTGGTGGGGGAAGCTTTGGATCGACCCTCGCGGGCAGAATTGCAA
CAGCACCAATCCCGGTCGAGGTTAGGTCCTCGCCCGTGCTGGAGAACTGG
GAAGGGCTGAAAGACATGTTGATGTTAGCGCAGCCAAGCGTCAACAGCGC
CAGCGTTAGCGTTGTTTTATCTGGTGGGGGAAGCTTTGGATCGACCCTCG
CGGGCAGAATTGCAACAGCACCAATCCCGGTCGAGGTTAGGTCCTCGCCC
GTGCTGGAGAACTGGGAAGGGCTGAAAGACGTCTGCACGGGCGCCGACAC
CGTGTATTTGGTCTCGGCGCTTGATCTCCCTCCCTCGCCAAACGACTCCG
ACTTGCAAGCCTTCACGGCAGGTCTGCACGGGCGCCGACACCGTGTATTT
GGTCTCGGCGCTTGATCTCCCTCCCTCGCCAAACGACTCCGACTTGCAAG
CCTTCACGGCAGGTGTGAGTAGGGTGGTTGATTGCTGCCTGGAGTGCGGG
GTAGAGGGCTTGGTGTTCACAAGCTCGTCCAGCGTGTTTTCGTCTGCGGA
GCAAGCGCAAGGGTCAACCGAGCATGAACGAGAAGAGGATGTCACGGCGC
GGGCCGTGGCCAGGGCTGAAGCTAGAATCCTCGACGCCAGGTGTGAGTAG
GGTGGTTGATTGCTGCCTGGAGTGCGGGGTAGAGGGCTTGGTGTTCACAA
GCTCGTCCAGCGTGTTTTCGTCTGCGGAGCAAGCGCAAGGGTCAACCGAG
CATGAACGAGAAGAGGATGTCACGGCGCGGGCCGTGGCCAGGGCTGAAGC
TAGAATCCTCGACGCCAGTGGTGCGACATCAACATCCCCGTCGCGCTTGC
ACACCTGCGCTCTGCGGCCTGCTGCCTTCGTCTACGGGGCATCGGAGAAG
GATGGTGGTGCGACATCAACATCCCCGTCGCGCTTGCACACCTGCGCTCT
GCGGCCTGCTGCCTTCGTCTACGGGGCATCGGAGAAGGATGGGCCGTTGC
ATCGAGCCCTGTCGTGGGTGGGCTGGGGTTTGAATCGGGTGGCGGTGGGG
TCCAACGGCGCGGAAGACGGCGGCGTCAAGGTGGACATGGTGCACTTAGA
TAACCTGGCCGTTGCATCGAGCCCTGTCGTGGGTGGGCTGGGGTTTGAAT
CGGGTGGCGGTGGGGTCCAACGGCGCGGAAGACGGCGGCGTCAAGGTGGA
CATGGTGCACTTAGATAACCTGGCGGAGGCACACTTGCTTGCCGGCGCAA
GACTCAAGAAGAAGAGAGCAGCGATAGACGCACCAACCGCCGCGGCGGAC
GTTGGGACAGACGTTGGGCGTGCGGACGCAGAGCAAAGAGGAGGCCCCGG
CAGCAGCAAGACCCGCAGCAGCAAGAACGAAGCTGCTCCGGCATGTGCCG
GAAAGGCCTACGATGTTACGGACGGTCAGCCCCGCAACCCGCAGGCGTTC
CTGGATGAGATTCTTGACGGACTCGGCGGAGGCACACTTGCTTGCCGGCG
CAAGACTCAAGAAGAAGAGAGCAGCGATAGACGCACCAACCGCCGCGGCG
GACGTTGGGACAGACGTTGGGCGTGCGGACGCAGAGCAAAGAGGAGGCCC
CGGCAGCAGCAAGACCCGCAGCAGCAAGAACGAAGCTGCTCCGGCATGTG
CCGGAAAGGCCTACGATGTTACGGACGGTCAGCCCCGCAACCCGCAGGCG
TTCCTGGATGAGATTCTTGACGGACTCGGTTTTGCGACGTCTAAGGTTCT
TCGGGTGCCGACCACGATCGCCCTTTCGGCTGCCTGGATGGCGGAGTTGT
TGTGCAAGGTGGGTGGCGAGTAGGTTTTGCGACGTCTAAGGTTCTTCGGG
TGCCGACCACGATCGCCCTTTCGGCTGCCTGGATGGCGGAGTTGTTGTGC
AAGGTGGGTGGCGAGTAG
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