mRNA_E-fasciculatus_F_contig12452.1882.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: D7FW18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW18_ECTSI) HSP 1 Score: 268 bits (685), Expect = 4.550e-84 Identity = 129/135 (95.56%), Postives = 130/135 (96.30%), Query Frame = 1
Query: 4 SMDGIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSG-DPNHPSSRGKLDMHQWNNSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLFSPVDEAWNEDY 405
SMDGIATHSDHATVNLNFWVTPDDANLDPSSGGLVV+PKVPPSG DPN PSS G LDM QWNNSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLFSPVDEAWNEDY
Sbjct: 299 SMDGIATHSDHATVNLNFWVTPDDANLDPSSGGLVVYPKVPPSGEDPNQPSSGGTLDMKQWNNSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLFSPVDEAWNEDY 433
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A7S2LVN8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LVN8_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.770e-28 Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 13 GIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWNNSSRVSDIESWLKD--EGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLFSPV 381
GI TH+D A VN+N W+TPDDANLD +SGGLV+F PPS W+ ++ +D E +D VTVPYR NR V+FDS L H +DKF F+EGY NRRINLT L+ +
Sbjct: 19 GINTHADQAAVNVNLWITPDDANLDSNSGGLVIFTAKPPS---------------DWDFTAYNTDTERVDRDILAPTNYANVTVPYRANRAVIFDSALFHHTDKFSFKEGYRNRRINLTLLYGDM 128
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A7S4A386_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A386_9STRA) HSP 1 Score: 122 bits (305), Expect = 6.240e-28 Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 1
Query: 10 DGIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWNNSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLFSPV 381
+GI+ H+D A VNLN W+TPDDANLDP+SGGLVV+ PP+ ++N R ++ L Y+ VT+PYRQNR+VVFDS L H++D F FREGYENRRINLT LF +
Sbjct: 365 EGISVHADEAAVNLNIWLTPDDANLDPASGGLVVYTAKPPA----------TATAEEYN--QRGAEFADELLRSTDYE-NVTIPYRQNRIVVFDSALYHKTDSFRFREGYENRRINLTLLFGKM 475
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A7W8FZW5_9GAMM (Tetratricopeptide (TPR) repeat protein n=1 Tax=Chiayiivirga flava TaxID=659595 RepID=A0A7W8FZW5_9GAMM) HSP 1 Score: 120 bits (302), Expect = 3.410e-27 Identity = 64/125 (51.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 4 SMDGIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWNNSSRVSD--IESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLF 372
++DGI H+D A VNLNFW+TPDDANLDP+SGGLVV+ P + ++N SS I+ +L+ G AV VPYRQNR V+FDS L HR+D FR+GYENRRIN+T LF
Sbjct: 474 TLDGIELHADIAAVNLNFWLTPDDANLDPASGGLVVWDMAAPP----------EWSFDEFNTSSAAGQARIQQFLQRSGAQ--AVRVPYRQNRAVLFDSDLFHRTDTIRFRDGYENRRINVTMLF 586
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A7S2A6T5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6T5_TRICV) HSP 1 Score: 114 bits (285), Expect = 3.790e-27 Identity = 62/128 (48.44%), Postives = 75/128 (58.59%), Query Frame = 1
Query: 13 GIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWNNSSRVSDIESWLKDE-GVYDLA-VTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLFSPVDEA 390
GI TH+D A VN+N W+TPDDANLDP SGGLVVF PPS WN +D + ++ G A VTVPYR NR V+FDS L H +D F F+ GYENRRINLT L+ + +
Sbjct: 95 GINTHADQAAVNVNLWITPDDANLDPDSGGLVVFTAKPPS---------------DWNFEMYNADADRVAEEILGPTKYANVTVPYRSNRAVLFDSMLFHHTDAFRFKGGYENRRINLTILYGEMQRS 207
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A7S1E136_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E136_HEMAN) HSP 1 Score: 111 bits (277), Expect = 1.420e-26 Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 13 GIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWNNSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLFSPVD 384
GI H+D A VNLNFWVT +DANL+ SGGLVV+ K PPS DM+ N + L++ G + VT+PYR+NR+V+FDS L H++D F F++G+ NRRINLT LF +D
Sbjct: 33 GINVHADEAAVNLNFWVTREDANLNKESGGLVVYTKKPPSD--------WTFDMY--NQFAEGGAARELLEESGWEN--VTIPYRENRLVMFDSALFHKTDSFQFKQGFLNRRINLTLLFGTMD 144
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A1G1II92_9BACT (Uncharacterized protein n=1 Tax=Nitrospirae bacterium RIFCSPLOWO2_02_FULL_62_14 TaxID=1801717 RepID=A0A1G1II92_9BACT) HSP 1 Score: 117 bits (293), Expect = 4.850e-26 Identity = 54/123 (43.90%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 4 SMDGIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWNNSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLF 372
++ G+ H+D A VN+NFW+TPD+ANLDP GGLVV+ + P + ++NN+ + +WLK +G AVT+PYR NR V+F+S L H +D+ F+EGYENRR+N+T L+
Sbjct: 445 ALTGLNMHADAAAVNVNFWITPDEANLDPGHGGLVVWDREAPR----------DWNFKEYNNAGNEPKVLAWLKQQGAQ--AVTIPYRCNRAVIFNSDLFHATDRISFKEGYENRRVNITLLY 555
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A7S1QWM9_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QWM9_ALECA) HSP 1 Score: 108 bits (269), Expect = 8.970e-26 Identity = 55/121 (45.45%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 7 MDGIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWNNSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFL 369
++G A H+D A VN+N W+T DDANLDP GGL+V+ K P + +N+ +V I L+D G V VP+R+NRVV+F+S L H + FR GYENRRINLTFL
Sbjct: 20 LEGTAVHADIAAVNVNLWITDDDANLDPGGGGLIVYTKQAPR----------EWGFEDYNSKEQVPRIREHLRDSG----RVAVPHRRNRVVIFNSNLFHETQAPRFRPGYENRRINLTFL 126
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A7S4QS40_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QS40_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.650e-25 Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 13 GIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWN-NSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLFSPV 381
GI TH+D A VN+N W+TP+DANLD SGGLV+F PP D Q+N N+ RV +E + + VTVPY++NR V+FDS L H +DKF F++GYENRRINLT L+ +
Sbjct: 285 GINTHADQAAVNVNLWITPEDANLDKESGGLVIFTAKPPD----------DWDFEQYNTNTERV--MEELIAPTNYAN--VTVPYKENRAVMFDSALFHHTDKFRFKKGYENRRINLTILYGEM 394
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Match: A0A7S1UWY4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWY4_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.870e-25 Identity = 59/120 (49.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 13 GIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSRGKLDMHQWNNSSRVSDIESWLKDEGVYDLAVTVPYRQNRVVVFDSRLLHRSDKFLFREGYENRRINLTFLF 372
G+ TH+D A VN+N W+TPD+ANLDP SGGLVVF PP ++N + + E LK G + VTVPY+QNR V+FDS L HR+D+ F+ GYENRRINLT L+
Sbjct: 320 GVLTHADDAAVNVNIWITPDEANLDPDSGGLVVFKTKPPE----------DWSFREYNAQAEYVE-EHLLKPSGFAN--VTVPYKQNRAVIFDSLLFHRTDQHRFKPGYENRRINLTILY 426 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12452.1882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12452.1882.1 >prot_E-fasciculatus_F_contig12452.1882.1 ID=prot_E-fasciculatus_F_contig12452.1882.1|Name=mRNA_E-fasciculatus_F_contig12452.1882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=149bp MDGIATHSDHATVNLNFWVTPDDANLDPSSGGLVVFPKVPPSGDPNHPSSback to top mRNA from alignment at E-fasciculatus_F_contig12452:68..2279+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12452.1882.1 ID=mRNA_E-fasciculatus_F_contig12452.1882.1|Name=mRNA_E-fasciculatus_F_contig12452.1882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12452:68..2279+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12452:68..2279+ >mRNA_E-fasciculatus_F_contig12452.1882.1 ID=mRNA_E-fasciculatus_F_contig12452.1882.1|Name=mRNA_E-fasciculatus_F_contig12452.1882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12452:68..2279+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |