mRNA_E-fasciculatus_F_contig12448.1878.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12448.1878.1
Unique NamemRNA_E-fasciculatus_F_contig12448.1878.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12448.1878.1 vs. uniprot
Match: D7FX92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX92_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 1.690e-81
Identity = 240/285 (84.21%), Postives = 241/285 (84.56%), Query Frame = -2 
Query:  741 NKRTKDECGDGDDGRPEKKIALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPS--NLLARPASADFRHGGGEELMALLKAKVGRLFSLSAEYTHVRTGVVPENGSPAALGGGEAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRVLASVKAVRAGHFVVHIKFDVAGSNECRPCDVSVLSWNEAQEGESAAAAAAGGADARVKVESGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHA 1589
            NKRTKDECGDGDDGRP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NLLARPASADFRHGGGEELMA LKAKVGRLFSLSAEYTHVRTGVVPENGSPAALGGGE GK        XXXXXXXXXXXXXXXXXX                 LRRVLA VKAVRAGHFVVHIKFDVAGSNECRPCDVSVLSWNEAQEGESA+    GGADARVKVE GGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHA
Sbjct:  246 NKRTKDECGDGDDGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMARLKAKVGRLFSLSAEYTHVRTGVVPENGSPAALGGGEVGKKQEAGLTNXXXXXXXXXXXXXXXXXXAGDVKSDVGGGG-----LRRVLARVKAVRAGHFVVHIKFDVAGSNECRPCDVSVLSWNEAQEGESAST---GGADARVKVEGGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHA 522
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BLAST of mRNA_E-fasciculatus_F_contig12448.1878.1 vs. uniprot
Match: A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 4.020e-75
Identity = 257/323 (79.57%), Postives = 261/323 (80.80%), Query Frame = -2 
Query:  741 SVAAVPPAGSGGRGSGXXXXXXXXXXXXXXXXXXXXLSNKRTKDECGDGDDGRPEKKIALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPS--NLLARPASADFRHGGGEELMALLKAKVGRLFSLSAEYTHVRTGVVPENGSPAALGGGEAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRVLASVKAVRAGHFVVHIKFDVAGSNECRPCDVSVLSWNEAQEGESAAAAAAGGADARVKVESGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHA 1703
            SVAAVPPA SG RGSG       XXXXXXXXXXX  LSNKRTKDECGDGDDGRPEKKIAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NLLARPASADFRHGGGEELMALL+AKVGRLFSLSAEYTHVRTG +  NGS AALGG E GK       XXXXXXXXXXXXXXX                     LRRVL+ VKAVRAGHFVVHI FDVAGSNECRPCDVSVLSWNEAQEGESA+A   GGADARVKVE     GGGFMDTVHGSKPWR SQHTAFVRVSGHA
Sbjct:  972 SVAAVPPARSGSRGSGAAQDGTAXXXXXXXXXXXA-LSNKRTKDECGDGDDGRPEKKIALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMALLRAKVGRLFSLSAEYTHVRTGGMSGNGSSAALGG-EVGKKQEDGLTXXXXXXXXXXXXXXXTAGDVKPDVGGGG--------LRRVLSRVKAVRAGHFVVHINFDVAGSNECRPCDVSVLSWNEAQEGESASA---GGADARVKVE-----GGGFMDTVHGSKPWRASQHTAFVRVSGHA 1276
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12448.1878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX92_ECTSI1.690e-8184.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNQ0_9PHAE4.020e-7579.57KIX_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12448contigE-fasciculatus_F_contig12448:2..3643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1704
Cds size891
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12448.1878.1prot_E-fasciculatus_F_contig12448.1878.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12448 2753..3643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927750.2753384-UTR-E-fasciculatus_F_contig12448:1..4811622927750.2753384-UTR-E-fasciculatus_F_contig12448:1..481Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12448 2..481 +
1695995679.0602171-UTR-E-fasciculatus_F_contig12448:1..4811695995679.0602171-UTR-E-fasciculatus_F_contig12448:1..481Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12448 2..481 +
1622927750.287028-UTR-E-fasciculatus_F_contig12448:1994..22551622927750.287028-UTR-E-fasciculatus_F_contig12448:1994..2255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12448 1995..2255 +
1695995679.0691776-UTR-E-fasciculatus_F_contig12448:1994..22551695995679.0691776-UTR-E-fasciculatus_F_contig12448:1994..2255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12448 1995..2255 +
1622927750.2989414-UTR-E-fasciculatus_F_contig12448:2680..27521622927750.2989414-UTR-E-fasciculatus_F_contig12448:2680..2752Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12448 2681..2752 +
1695995679.078702-UTR-E-fasciculatus_F_contig12448:2680..27521695995679.078702-UTR-E-fasciculatus_F_contig12448:2680..2752Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12448 2681..2752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927750.3145351-CDS-E-fasciculatus_F_contig12448:2752..36431622927750.3145351-CDS-E-fasciculatus_F_contig12448:2752..3643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12448 2753..3643 +
1695995679.0871794-CDS-E-fasciculatus_F_contig12448:2752..36431695995679.0871794-CDS-E-fasciculatus_F_contig12448:2752..3643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12448 2753..3643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12448.1878.1

>prot_E-fasciculatus_F_contig12448.1878.1 ID=prot_E-fasciculatus_F_contig12448.1878.1|Name=mRNA_E-fasciculatus_F_contig12448.1878.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=297bp
MNPPPDCPPLSTLTRASAPPAAAAAALSPSCASFQESTDTSHGRHSLLPA
TSNLMCTTKCPARTAFTLASTLRRPPPPPPTSDLTTPPAVVVPTAVVVAV
AGAAAPAPPFARPSSCFFPASPPPRAAGEPFSGTTPVLTWVYSALREKSR
PTFAFNRAISSSPPPWRKSAEAGRASRFDGAGGAAVAGDEDAPPPFSEPS
SASFDPDVAAAAAAAAAAIEGDIAGDEDPLLSPPPPPRAIFFSGLPSSPS
PHSSFVRLLLSGGGPAPAAAAAAAAVPSCAAPLPRPPLPAGGTAATE
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mRNA from alignment at E-fasciculatus_F_contig12448:2..3643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12448.1878.1 ID=mRNA_E-fasciculatus_F_contig12448.1878.1|Name=mRNA_E-fasciculatus_F_contig12448.1878.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12448:2..3643+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCACCCCCCCCCCTCCCTCTCACCCGCCCGCCCCCCATAGAAAAACAG
GAACAAACACCGTTTGTCATCAATCGATCGACCCCCCCCGTCCCCCAACA
CTGAGTACAGAGGTCGACAAGACAACCAGTGAGATCCTGCTGCGACAGCC
AGGTCCCACCCAACTACGACCTATGCGGTGGCTTGAAGGTTTTCCCGAAA
ATAGATTCCACCCCAACCACAGCAGTCACGATACCAACCCTGCGCTATTT
TCAACCCTCGTCATCCCTTGGCCCAGCCACGGCTCTCGGCTCACCGCCCC
GGTATGTGGCTTGGCTTGGGCACACTCGGCGCGGTCCTGGTCAAATCGAA
GATCTGAACTCTCTACACACACTCCTCTTGGTTCCCAAAAACGACACCAG
CAATCGAGTGTACACTCCAACAACAGGCAAGCAATCTTTGCAAAAAGCTC
GAGAGCCTTCTTCTCCAGCCAGCAGCCGCAGCCGCAGCCGCAGCGGCACA
ACACAACGCGGACAGCAACCAAGAGCTCCTCCTCCCTTCACACCCTTCAC
ACCCAAGTTCCTTCTACATCTGTCACAGCGGTCAACGGGCCCGGCACTCT
CACGTACCAACCAACCGCCCTACTACAAGGAGAAAGAGAAAAAAGAAACA
AAAACAAGGCCGTATTGCCATTTTCCAACCATCCAACATCCTAAACACAT
TTTTGCACCCCGGCGAGAGGCCGGGAAAACTCCGCAATGTCACGGCGCGC
ACACGACGACGCCACGAGCACAAAAAAGAGACGCGCTCGGCGGGCGGGCG
TCGGAATAAAAATAAAAAATAACTTGATAAAACAACCGCGGGGAGCGCCT
GCCTGCCTGCCTGCCTGCCTGTCTGTGGGCAACCAACCCGCGCGCGGCCT
ACGAACGCCTGCCTCAATCAAAGTATGGTACAGCGGTTGACGTATAGCAG
TACTTTCTCTTCTGCGGCCCTGCGCTTTCTCGCGAGTGGCCGGGAGATCC
AAGGGTGAACATGGGAAAAGAGACAGGGGGGCGGGGGCGGGGGCGGGGAC
GGTACACAAGGCGGAAAACAACACCCCCCCCCCCTCCCCCCGCGTTTTGC
GAAACACGTGCTACGCTACAGGAACCACATCACCAACACGCATGTCACCA
AAGATGGGGACGAGACGCGCGCCCGGGAGGGGGCAAGGGCGGGGGGCGGG
CGGGATTACACGCTCTGCACACGAGGCAAAGCTTTCGGCTCTTGGCTGTG
AACGTCGAGCGTGATAGCATACCACCGCCACCACCAGCGGTGTAAACGGC
AGAGCGGGAAAGAGCATGAGAGCGCTTGGCACACCATCATATACGTGTAA
ACTTCGGGATGCTGATCTGGCAACCAACCCCGCAGCCCCCTGAAGAGACT
TTTCCCAAAACTAACACACCTCGGTGCGCCCCGGGCACATACCCAATTTG
AACCTTACAAGCACAAACACAAGCACACACACACACACACACCACCCTCT
ATTCCCTTGCATTCTCCGATTTCTCTTGAAAGAGCGCCATCGACGACACA
GAAGAATAACCGTCCCGGATTGTCCTGGAAACGGCTACAGGAACCAAACC
AAAAACCAAAAATTGACAACGACAGCACGCACTCCCGGGAGGTGACCAAA
CACACTTAACTAGCCTGTGGGACCAAACCGGCGGCGAAAATGAGAAATGG
AGGGGGGGTGGGGTGAGGGTAGGTTAGGGGGGGTGGGGAGGTAGGACCAC
CACCACACCCTGCACGCCCTTAAAAAGGAAGGCCTCGCTGCACAGCAGTT
ACAAGAGCACGTGAACAAAGCACGCCCATCCATGTACGCGTCTAAAAAAA
TCAATCGCGATCGTGTCGGCAGCAGCCACGCCGCCCATTCGAGCTACTCT
AGCTGTAGCTCCTTCATTGACATCATGCTTCGGCCGTTGCGACGCCGGCG
CCGGCTGCGGCTGCGGCTGCGGCAGCCACGGTGGCGGATGCAGTCTGAGA
AGAAGCCGGGCTCTGCGGCTCTCGCTGCGGCGTTCCGGCCAAGCTCTCGG
CCAGGAGCGCCGAGCCGTCAGGCGTTCTGAGGGTCGGGGGGAGGGGTTCC
CCCGTGCCCGAGTCGGTGGCGACGAGCTTGTTGGCGATCGTGCAAGGGTC
CTGGAAGACGCGGTCGTAGTTGGCCATCCAGGTCAAGAACGACACGAGGG
CTTCCCCGACGTTCCCGTCTGTCCGCTTGTTGACGAAACCGTGCAGCGCC
TGGGGTGGGCGGGGCGGGTGGGGTAGCATCACCAACAGGAAGGGTTTTGG
AGCGTCAGTGGGGAGGAGGAGGAGGAGGAGGTACCACAGCAAGAGAAGGG
AAGGAGGGAGGGAGGCATGAAATGACACGACACGAACCCGATTCAGCAGT
ACATGGACACCACCAACAAACTCCCGCAAAGCTACAATACTTGCCACGGG
GGCTTTCGCGAAAGGTTGTGCACGCCGACTTTCGAGGAACAAAACATCAA
TCACGAGACAAGGCCACACTTCTTGACACCACAACCACAAACAAGGGCGA
GCAAGTCTTTCTGGAACCGCTGTAAGACCGACGTCTTCTCATTTGTTCAG
CCGGTTCGCGCGGTTAAACAAACCTAACATAGAACAAGTACAAGAACGAA
AAATATATATATCGTGACTGACCTGGAAGGCGTGTCCCGAGACGCGGACG
AAGGCGGTGTGCTGTGATGTCCGCCACGGCTTGGAGCCATGCACGGTATC
CATGAACCCACCGCCTGATTGCCCACCGCTTTCAACCTTGACACGGGCAT
CGGCCCCGCCCGCGGCGGCGGCGGCAGCGCTTTCGCCTTCCTGTGCCTCG
TTCCAGGAGAGCACAGACACGTCGCACGGGCGGCACTCATTGCTGCCAGC
GACATCGAACTTGATGTGCACCACGAAGTGCCCCGCTCGCACGGCCTTCA
CGCTGGCGAGCACCCTCCGGAGGCCACCACCGCCGCCGCCAACGTCGGAC
TTGACGACACCTCCTGCCGTCGTCGTTCCCACCGCTGTTGTTGTCGCCGT
CGCCGGCGCGGCAGCGCCGGCGCCGCCGTTCGCTAGGCCATCTTCCTGCT
TCTTCCCCGCTTCTCCTCCACCAAGGGCGGCTGGGGAGCCGTTCTCCGGC
ACAACCCCCGTTCTGACGTGGGTGTACTCGGCACTAAGGGAGAAGAGCCG
CCCTACCTTCGCCTTTAACAGGGCCATCAGCTCCTCGCCCCCCCCGTGGC
GAAAATCCGCCGAGGCCGGTCGCGCCAGCAGGTTCGATGGTGCCGGGGGC
GCCGCCGTGGCCGGCGACGAGGACGCCCCCCCCCCATTTTCCGAACCCAG
CAGCGCGTCGTTCGATCCAGACGTGGCGGCGGCGGCGGCGGCAGCGGCAG
CGGCCATCGAGGGTGACATAGCCGGAGATGAAGATCCACTCCTGTCGCCG
CCGCCCCCGCCGAGAGCGATCTTCTTCTCCGGCCTGCCGTCGTCGCCGTC
GCCGCACTCGTCCTTCGTGCGCTTGTTGCTGAGCGGTGGCGGACCCGCCC
CTGCCGCAGCTGCGGCCGCCGCCGCCGTGCCATCCTGTGCGGCGCCGCTA
CCGCGGCCGCCGCTGCCGGCCGGAGGGACGGCGGCAACCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12448:2..3643+

>mRNA_E-fasciculatus_F_contig12448.1878.1 ID=mRNA_E-fasciculatus_F_contig12448.1878.1|Name=mRNA_E-fasciculatus_F_contig12448.1878.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1782bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12448:2..3643+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACCCACCGCCTGATTGCCCACCGCTTTCAACCTTGACACGGGCATC
GGCCCCGCCCGCGGCGGCGGCGGCAGCGCTTTCGCCTTCCTGTGCCTCGT
TCCAGGAGAGCACAGACACGTCGCACGGGCGGCACTCATTGCTGCCAGCG
ACATCGAACTTGATGTGCACCACGAAGTGCCCCGCTCGCACGGCCTTCAC
GCTGGCGAGCACCCTCCGGAGGCCACCACCGCCGCCGCCAACGTCGGACT
TGACGACACCTCCTGCCGTCGTCGTTCCCACCGCTGTTGTTGTCGCCGTC
GCCGGCGCGGCAGCGCCGGCGCCGCCGTTCGCTAGGCCATCTTCCTGCTT
CTTCCCCGCTTCTCCTCCACCAAGGGCGGCTGGGGAGCCGTTCTCCGGCA
CAACCCCCGTTCTGACGTGGGTGTACTCGGCACTAAGGGAGAAGAGCCGC
CCTACCTTCGCCTTTAACAGGGCCATCAGCTCCTCGCCCCCCCCGTGGCG
AAAATCCGCCGAGGCCGGTCGCGCCAGCAGGTTCGATGGTGCCGGGGGCG
CCGCCGTGGCCGGCGACGAGGACGCCCCCCCCCCATTTTCCGAACCCAGC
AGCGCGTCGTTCGATCCAGACGTGGCGGCGGCGGCGGCGGCAGCGGCAGC
GGCCATCGAGGGTGACATAGCCGGAGATGAAGATCCACTCCTGTCGCCGC
CGCCCCCGCCGAGAGCGATCTTCTTCTCCGGCCTGCCGTCGTCGCCGTCG
CCGCACTCGTCCTTCGTGCGCTTGTTGCTGAGCGGTGGCGGACCCGCCCC
TGCCGCAGCTGCGGCCGCCGCCGCCGTGCCATCCTGTGCGGCGCCGCTAC
CGCGGCCGCCGCTGCCGGCCGGAGGGACGGCGGCAACCGAGATGAACCCA
CCGCCTGATTGCCCACCGCTTTCAACCTTGACACGGGCATCGGCCCCGCC
CGCGGCGGCGGCGGCAGCGCTTTCGCCTTCCTGTGCCTCGTTCCAGGAGA
GCACAGACACGTCGCACGGGCGGCACTCATTGCTGCCAGCGACATCGAAC
TTGATGTGCACCACGAAGTGCCCCGCTCGCACGGCCTTCACGCTGGCGAG
CACCCTCCGGAGGCCACCACCGCCGCCGCCAACGTCGGACTTGACGACAC
CTCCTGCCGTCGTCGTTCCCACCGCTGTTGTTGTCGCCGTCGCCGGCGCG
GCAGCGCCGGCGCCGCCGTTCGCTAGGCCATCTTCCTGCTTCTTCCCCGC
TTCTCCTCCACCAAGGGCGGCTGGGGAGCCGTTCTCCGGCACAACCCCCG
TTCTGACGTGGGTGTACTCGGCACTAAGGGAGAAGAGCCGCCCTACCTTC
GCCTTTAACAGGGCCATCAGCTCCTCGCCCCCCCCGTGGCGAAAATCCGC
CGAGGCCGGTCGCGCCAGCAGGTTCGATGGTGCCGGGGGCGCCGCCGTGG
CCGGCGACGAGGACGCCCCCCCCCCATTTTCCGAACCCAGCAGCGCGTCG
TTCGATCCAGACGTGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCCATCGA
GGGTGACATAGCCGGAGATGAAGATCCACTCCTGTCGCCGCCGCCCCCGC
CGAGAGCGATCTTCTTCTCCGGCCTGCCGTCGTCGCCGTCGCCGCACTCG
TCCTTCGTGCGCTTGTTGCTGAGCGGTGGCGGACCCGCCCCTGCCGCAGC
TGCGGCCGCCGCCGCCGTGCCATCCTGTGCGGCGCCGCTACCGCGGCCGC
CGCTGCCGGCCGGAGGGACGGCGGCAACCGAG
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