mRNA_E-fasciculatus_F_contig12447.1877.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12447.1877.1
Unique NamemRNA_E-fasciculatus_F_contig12447.1877.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: D7FPA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPA8_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 2.970e-140
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 1
Query:    4 IRKELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIINRGRVEQNFEPSGFDCRLDQ 660
            IRKELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAE+SQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIINRGRVEQNFEPSGFDCRLDQ
Sbjct:  265 IRKELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEVSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIINRGRVEQNFEPSGFDCRLDQ 483          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: A0A6H5K9M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M5_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 2.810e-119
Identity = 201/222 (90.54%), Postives = 207/222 (93.24%), Query Frame = 1
Query:    4 IRKELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEMSQADASATRSLDDKIWLYSYRCFGFAL---YVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIINRGRVEQNFEPSGFDCRLDQ 660
            IRKELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAE+SQADASATRS   +  + +   FGF L   + G QMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYT+IINRGRVEQNFEPSGFDCRLDQ
Sbjct:  377 IRKELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEVSQADASATRSKYPRDSVTTNPAFGFCLLLSFFGFQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTVIINRGRVEQNFEPSGFDCRLDQ 598          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: A0A835ZA44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA44_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.550e-59
Identity = 106/219 (48.40%), Postives = 152/219 (69.41%), Query Frame = 1
Query:    4 IRKELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIINRGRVEQNFEPSGFDCRLDQ 660
            +R EL  ++E+QKHVQFA+TFLVGWDN+ +   EVE+ R SNG+  A +LAE + A  +A+R+L  K  L+  RC G  +Y+ +Q+AAW AI+ LTA S  +A+ +  +L +V+W+    + ++ SIVP  VT+IN IMP+ IK IT +E+WD  +T+TYML  RM+LAKILNA IQA SY+LLA+PYL +     +   R  VEQ ++ + F+CR+DQ
Sbjct:  165 LRCELDALEEDQKHVQFARTFLVGWDNNTAKGHEVEELRCSNGMQLAVLLAEDTAAKTTASRTLRQKALLFVRRCLGMVVYMALQLAAWYAIVLLTASSRALATWILNELAAVSWLKGFTSTLAVSIVPVGVTIINTIMPVFIKLITDIEQWDSAKTITYMLVTRMYLAKILNACIQAASYMLLANPYLISRIDTNL---RRNVEQGYDSTSFECRIDQ 380          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: A0A6A4CZB2_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CZB2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.160e-22
Identity = 75/224 (33.48%), Postives = 114/224 (50.89%), Query Frame = 1
Query:   10 KELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIIN-------RGRVEQNFEPSGFDCRLDQ 660
            K +  V+   +  ++++  L  WD SL+   +V D + +        + E  +A+   +R+   K  LY+ R   F  Y+ +Q A+W  II LT +S  +      QLQ +A  +   A  ++SIVPA VTVINAI+P +I  +T +EKWD        +  R++LAKILN  IQ  S+ LL DP L    Q  + +        R  V  +F+P  FDCR +Q
Sbjct:  344 KAVQAVENASEKPKYSRILLNAWDFSLTTSDQVSDLKKTIAEQVKIAMEEEKRAETIKSRTKKQKYILYARRFVAFIFYMMIQAASWYLIILLTTQSSQL------QLQ-IAARAAIFAPYASSIVPAVVTVINAILPKLISLLTTIEKWDDVGFAIKAMVTRLYLAKILNVLIQLFSFALLLDPMLLTSTQNILELFTFDGSTVRKNVMLDFKPESFDCRAEQ 560          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: A0A2R5GNY3_9STRA (Transmembrane channel-like protein 5 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNY3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.620e-22
Identity = 71/195 (36.41%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   10 KELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLA--EMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQ---SVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAG 579
            K   + ++     +FA++ L  WD+S+S+ +EVED  L + L     L   E++ A+   +RS  +++ L + R     +Y+ VQ ++ AAII+LTA S  ++  + Q +    S+ W+     +IS SIVP  V+VINA++P ++  +T  EKWD     T  +  R+F+AKILNAFIQ  S+L L DPY+  G
Sbjct:  505 KAFGLFEDLDSQSRFAQSALNAWDHSISDPREVED--LKHTLLDQYFLTTHELNTANKKKSRSFKERLTLRARRITANFIYISVQGSSAAAIIYLTATSAQMSQNVLQIISDNASLQWLLPIVTLISGSIVPLAVSVINALLPAVVTFVTAFEKWDDGGFHTKYMLSRLFVAKILNAFIQVFSFLQLLDPYMLRG 697          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: W2QU44_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QU44_PHYPN)

HSP 1 Score: 103 bits (256), Expect = 9.930e-22
Identity = 74/227 (32.60%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   10 KELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVIS---TSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIIN-------RGRVEQNFEPSGFDCRLDQ 660
            K +  V+   +  ++++  L  WD SL+ Q +  D + +        + E  +A+   +R+   +  LY+ R   F  YV +Q A+W  II LT +S  +      QLQ    I++ AA+ +   +SIVPA VTVINAI+P +I  +T LEKWD        +  R++LAKILN  IQ  S+ LL DP+L    Q  + +        R  V   F+   + CR +Q
Sbjct:  338 KTVQAVENTSEKPKYSRILLNAWDFSLTTQNQASDLKKTIAEQVQLAMEEEKRAETIKSRTKKQRYILYARRFVAFVFYVAIQAASWYLIILLTTQSSQI------QLQ----IAEKAAIFAPYASSIVPAVVTVINAILPKLISLLTALEKWDDVGFAIKAMVTRLYLAKILNVLIQMFSFALLLDPFLLTSTQKILDLFTFEGSTVRENVMLEFKSEVYTCRAEQ 554          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: A0A329SIR7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SIR7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.610e-21
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   52 FAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVIS---TSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIIN-------RGRVEQNFEPSGFDCRLDQ 660
            +++  L  WD SL+ Q +V D + +        + E  +A+   +R+   +  LY  R   F  Y+ +Q A+W  II LT +S  +      QLQ    I++ AA+ +   +SIVPA VTVINAI+P +I  +T +EKWD        +  R++LAKILN  IQ  S+ LL DP L    Q  + +        R  V   F+P  + CR +Q
Sbjct:  352 YSRILLNAWDFSLTTQDQVSDLKKTIAEQVQLAMEEEKRAETIKSRTKKQRYILYVRRFVAFVFYMAIQAASWYLIILLTTQSSQI------QLQ----IAEKAAIFAPYASSIVPAVVTVINAILPKLISLLTAIEKWDDVGFAIKAMVTRLYLAKILNVLIQMFSFALLLDPLLLTSTQNILGLFTFEGSTVRKNVMLKFKPEVYTCRAEQ 554          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: A0A7S1G983_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G983_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.490e-17
Identity = 70/223 (31.39%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   10 KELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANMLAEMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYT------IIINRGRVEQNFEPSGFDCRLDQ 660
            K + +++ ++   ++++  L  WD SL    EV D + + G      L E   AD    RS+     LY+ R  G  L V +Q  A   II LT  S  +A+ +       A   +  A  +  IVP  V+V+NA+ P I+ A++K EKWD   T    L  R+F+AK+LN  +Q  S+  LADPY+  G  +       ++  R   ++ F+P  + CR DQ
Sbjct:  358 KAISVLEGKEGEHKYSQITLNAWDYSLV-ATEVADLKYAIGEQILLALHEDEVADLQRKRSIKQDAILYTRRGVGLLLSVALQGGAAFVIIQLTITSAQLANVIK------ATGGEVLAPFADFIVPVAVSVLNALQPPILTALSKFEKWDSGGTQVKTLVWRLFIAKMLNMLLQIFSFAQLADPYMLRGPTFGFSDTDFLVSVRQSTQKRFQPDSYACRADQ 573          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: A0A3R7JCL8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JCL8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.010e-15
Identity = 52/142 (36.62%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  202 KIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIIINRGRVEQNF 627
            K  LY+ R   F  Y  +Q A+W  II LT +S  +   +A      A         +++IVPA VTVINAI+P +I  +T +EKWD        +  R++LAKILN  IQ  S+ LL DP L    Q   ++   ++ Q+F
Sbjct:    3 KYILYARRFIAFIFYTAIQAASWYLIILLTTQSSELQLKIATDAAFFAPY-------ASTIVPAAVTVINAILPKLISLLTAIEKWDDVGFAIKAMVTRLYLAKILNVLIQVFSFALLLDPQLLTSTQTASLVELNKLLQDF 137          
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Match: A0A2P4XAR1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XAR1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-15
Identity = 63/185 (34.05%), Postives = 97/185 (52.43%), Query Frame = 1
Query:   91 SNQQEVEDYRLSNGLAAANMLAEMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAESDNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKLEKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIII---NRGRVEQNFEPS 636
            +++++V D + +       ++ E  +A+    R+   +  LY+ R   F  YV +Q A+W  II LT +S      L  Q+ S A I    A  ++SIVPA VTVINAI+P +I  +T +EKWD        +  R++LAKILN  IQ  S+ LL DP L   +Q  + +       + +NF P+
Sbjct:  299 ASEKQVNDLKKTIAEQVKLVMEEEKRAETIRLRTKKQRYILYTRRFVAFIFYVTIQAASWYLIILLTTQSSQ----LQLQIASKAAIF---APYASSIVPAVVTVINAILPKLILLLTAIEKWDDVGFAIKAMVTRLYLAKILNVLIQLFSFALLLDPLLLTSKQNILDLFSFEGSTIRENFIPA 476          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12447.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FPA8_ECTSI2.970e-14099.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9M5_9PHAE2.810e-11990.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZA44_9STRA1.550e-5948.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A4CZB2_9STRA1.160e-2233.48Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A2R5GNY3_9STRA1.620e-2236.41Transmembrane channel-like protein 5 n=1 Tax=Honda... [more]
W2QU44_PHYPN9.930e-2232.60Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A329SIR7_9STRA4.610e-2133.80Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A7S1G983_9STRA4.490e-1731.39Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A3R7JCL8_9STRA1.010e-1536.62Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2P4XAR1_9STRA1.010e-1534.05Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12447contigE-fasciculatus_F_contig12447:73..3500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog4792.ETI32815
EggNOG OGs2CT9D@1,2RFG2@2759,3QGUY@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_004100.1
Exons6
Model size660
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12447.1877.1prot_E-fasciculatus_F_contig12447.1877.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12447 73..3500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927750.1797838-CDS-E-fasciculatus_F_contig12447:72..1481622927750.1797838-CDS-E-fasciculatus_F_contig12447:72..148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 73..148 -
1695995678.9980478-CDS-E-fasciculatus_F_contig12447:72..1481695995678.9980478-CDS-E-fasciculatus_F_contig12447:72..148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 73..148 -
1622927750.1967697-CDS-E-fasciculatus_F_contig12447:565..7141622927750.1967697-CDS-E-fasciculatus_F_contig12447:565..714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 566..714 -
1695995679.0085642-CDS-E-fasciculatus_F_contig12447:565..7141695995679.0085642-CDS-E-fasciculatus_F_contig12447:565..714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 566..714 -
1622927750.2089205-CDS-E-fasciculatus_F_contig12447:1674..18511622927750.2089205-CDS-E-fasciculatus_F_contig12447:1674..1851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 1675..1851 -
1695995679.0173845-CDS-E-fasciculatus_F_contig12447:1674..18511695995679.0173845-CDS-E-fasciculatus_F_contig12447:1674..1851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 1675..1851 -
1622927750.219558-CDS-E-fasciculatus_F_contig12447:2373..24431622927750.219558-CDS-E-fasciculatus_F_contig12447:2373..2443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 2374..2443 -
1695995679.026017-CDS-E-fasciculatus_F_contig12447:2373..24431695995679.026017-CDS-E-fasciculatus_F_contig12447:2373..2443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 2374..2443 -
1622927750.229918-CDS-E-fasciculatus_F_contig12447:2804..28901622927750.229918-CDS-E-fasciculatus_F_contig12447:2804..2890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 2805..2890 -
1695995679.0367646-CDS-E-fasciculatus_F_contig12447:2804..28901695995679.0367646-CDS-E-fasciculatus_F_contig12447:2804..2890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 2805..2890 -
1622927750.2421808-CDS-E-fasciculatus_F_contig12447:3398..35001622927750.2421808-CDS-E-fasciculatus_F_contig12447:3398..3500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 3399..3500 -
1695995679.0494342-CDS-E-fasciculatus_F_contig12447:3398..35001695995679.0494342-CDS-E-fasciculatus_F_contig12447:3398..3500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12447 3399..3500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12447.1877.1

>prot_E-fasciculatus_F_contig12447.1877.1 ID=prot_E-fasciculatus_F_contig12447.1877.1|Name=mRNA_E-fasciculatus_F_contig12447.1877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=220bp
QIRKELFIVDEEQKHVQFAKTFLVGWDNSLSNQQEVEDYRLSNGLAAANM
LAEMSQADASATRSLDDKIWLYSYRCFGFALYVGVQMAAWAAIIFLTAES
DNVASGLAQQLQSVAWISQAAAVISTSIVPATVTVINAIMPIIIKAITKL
EKWDMERTVTYMLTIRMFLAKILNAFIQALSYLLLADPYLFAGQQYTIII
NRGRVEQNFEPSGFDCRLDQ
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mRNA from alignment at E-fasciculatus_F_contig12447:73..3500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12447.1877.1 ID=mRNA_E-fasciculatus_F_contig12447.1877.1|Name=mRNA_E-fasciculatus_F_contig12447.1877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3428bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12447:73..3500- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATCCGCAAGGAGCTTTTTATTGTAGATGAGGAGCAGAAGCACGTACA GTTCGCCAAGACTTTCCTCGTCGGCTGGGACAACTCTCTTTCCAACCAGC AGGTGGGCGTCCCGCGTCGCCGACGGCCCGGCTTGGATTGGAAACCTCGC GCTGGGTTCAGGGATGTCACAAGAAACTGACGTCAGACTTGAATAGATGT TGTCGTTTGGGTTGGGTTGAGTACAACGGAGGCGGGCGTGGCTCTCTTAC TTTAAGACGAACAAGGGCACGGGATGCGCAGCCAGCTGACTGTTGGTGGC ATGTATGTACTTTGAGTCAAGGAAATCGAGACGGCTATTATTCCTTACGT GTTCACAAGCCAACTGGAACGTGGTACAGTCAGTAGAGAAGCTGTTACGT TGGCATTATGGCAGAAGAACTCCAATCAAGTCGACGGTGGTGTTCGTTTC TAATGGCGAATCCAAAAGATACAACAATTAACTTCTGCTATCGAGGAACA CTCTTGTTAGACGAAGCACATACACGTACGTGTCTCCAAAATCTGGCGCC TTTCAGTGCCACGACCACTTTGGTCCTGCTGCTGAACTCAAAGTGCAAAT GGTTTCGCAGGAGGTGGAGGACTACAGGCTGTCCAACGGGCTGGCCGCCG CCAACATGCTTGCTGAAATGAGCCAGGCGGACGCATCCGCCACGAGGTGA TGTGCGCGTAAGACTCAACCCCTCGAGCAACCACTAGACACCGCAGTTTT TATTAGGTTCCAGATGATTCTCTGCGTACGTATAGCGCAACTTCTGCTGC CGAAAACCGGCGAACTAAAACGTATGTGTGACTGGAGAACACCCGCGTGT AACTGCAAATTTAGTTGCTGAGGAGAAAACGTTGACACGCAACTGTGTAT TGTCGCAGGGTGTATTCGAGTAGCTGCATCACCACCTCCATCGAAAGGCT CTCCTTCTTTCATTTTCGCCCTTAGTGGCTAACTCGGTGCTAATCGGTGA AACTGAAGACAAACGAAGCGCCGAGAACATTCTCCTTGCTTCCCCTTCGT TCTTCAGGAGCTTGGATGACAAGATTTGGCTCTACAGCTACCGGTGCTTC GGCTTCGCCCTGTACGTGGGTGTGCAGGTGCCCGAGCGAGAGAAAACACC CGGCCGAAATGTGGTGCCACGGAGCTAGCTCGTAGAAAGCCGCGACAAAC ACGCGTCCGAAATGTTTTCGGGTGTACTTTGTCGGTAGCCGAATTGTGGG AGACAATGTACTTGTACGTGAAACACCGTTTTTGGTTGTTCAGCCTGTGG AGGACGGTATTCAAATGAACGTCGTTGGTCTACGCCCTAGCCCCCGACAG GGTACCAACAGAGGAAATAATGCAAGCAGGTAGACACCAACATTGCTTGC ACGAGGTAAACCAGAAAAACAGGCTTCAGATATATCGCTGTTGACGGCGG CTGGTCTTGCTCCTTTTGGTCTCGAGATAGCCGTGCGGGTGGCGAGTAGC CTTCCTCAAAAACCGAGCTACGCCACGCAAACCGACCATCGGAGCCACAA CAATGATGTCCACCAGTAGACTAAGTATCCACGGGATTCGGTGACAACCA ACGGTGTTCGGTTTGTCTCTTTTCTTCAATTTTTTGTTTGGGTTTGCAGA TGGCCGCTTGGGCGGCGATCATCTTCCTCACGGCCGAGTCCGACAACGTG GCGAGCGGCCTCGCGCAGCAGCTGCAGTCCGTGGCCTGGATCTCCCAGGC GGCCGCCGTGATCTCGACTTCGATTGTGCCGGCGACGGTGACCGTCATCA ACGCCATCATGCCGATCATCATCAAGGTGTGTGCGACTAGCGGTGACGCG AAAGTGGCTCGAAAGAGGAACTATTGGTGGAGAAAGTAGCCATACCACCA AGGTGCTTAGACTATGGCAGGAACGTGCTTGAAGAGAAAGGAACTAGATC GCGATATGTAACCTTGCAATTGGCTTGTTTCGCCGTGCTACGAATTCCGT CCATGCCTTAGGCGTCTAGCCAGAACTCGGCGCATTTTTGTCTTAGTAGG ATTGGGTCTTTGCAGGAGCTGATTTTGACCTCGTTGTGACAAGGGTGCGT AAAGTCGTGCACCACGTTTTCATCTCAGAGCAGATATCTCTTGTGCTCGA CAAGGGGTAAAAATCGTCATGCGCGCCCATGATCCATCAACAGGAGTTTG CGACCTTGGGTAGCATGTTCAAAAGCCGCCATACCCTCTCGTGTTGCTTG TGTGTGCACCATGTACTCCTCAAATGTTTTGGGCCATCATTCGGTAGCAA CCCTGGCCTTCAACCCAGTCCTCACCCAAACCGTGGGACAAGATGATGGA CAAGTATACGAACATGGCACGGTCAGGAAGCCTACGCACCGTGGAACAAA ATCACCATCGTTATCCGCTTCTAACAGCTCGTGAGGCCTAAACTGTTTCC GACTTTAGTTTTCCCGCTTCAATGCTCACGCATATATTTGCCTTCTCTTT CCTGGACAAGTCACTACAGTCATGTGATCGCCACAAACGGCAATAGTACC CAAATGATGCAGTAAAGAGTCTTTCTGAATCCACAAACACACCGCATGTA CATCGCCCAGGGAGAAGGGGGGATACATGCCACGAACGCCATGGAGATAT TCTTAGTCGAAACACACCGTGTAACATACAAATGTTACGTTGGGTGTTTG TCAACCATGAAGTTGGTCAAGGCTCGCGTCTTCAAAGACCACGCACCAAG CTTGTGCCTGATACATGGTACTGTTTCGAAATCCAGGCCATCACCAAGCT GGAGAAGTGGGACATGGAGAGGACCGTGACGTACATGCTCACGATTCGGA TGTTCTTGGCCAAGATCTTGAACGCCTTCATCCAGGCCCTGTCGTACCTT CTCTTGGCCGACCCGTACCTTTTCGCCGGACAACAGTGAGAGCACAATCA CTAGAAAAAACGCAGTTTCATGTGTTTGGTACTTATTGATGGTCGAAAAG CTGAATGAGAGATAGAGAGGTGGGGGGGAGAGAAGGGCGGGCGCGGGGGG GGGGGAGATGGCGAGGCAGAGGCAGAGGCAGACGGAAGCATAGATGGACA GAAAGACAGCAAGGGAGAACGACGTCGAGGGGGAAAGAAGAACGAGAGCT AATATTAGTATCCTCACTGACGAGGTCGCGTGTTGTTCTCAAGCCAATTT TTTTCCACTGCGTTTCGCTGTTTTGCAAGCAGATAACAACGAACATACGG GGCATCACCAAGCGTATCAATGCAGATGTGTTGTAGCTTTCCGAAAGAGT AGTTCAACACATTCCTCTCTTTTTGCTTCTGTACCATTCGTTTTCTTCAC AGGTACACTATAATTATCAATCGGGGCCGCGTGGAGCAGAACTTTGAGCC GTCAGGGTTTGACTGCCGGTTAGATCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12447:73..3500-

>mRNA_E-fasciculatus_F_contig12447.1877.1 ID=mRNA_E-fasciculatus_F_contig12447.1877.1|Name=mRNA_E-fasciculatus_F_contig12447.1877.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12447:73..3500- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATCCGCAAGGAGCTTTTTATTGTAGATGAGGAGCAGAAGCACGTACA
GTTCGCCAAGACTTTCCTCGTCGGCTGGGACAACTCTCTTTCCAACCAGC
AGCAGATCCGCAAGGAGCTTTTTATTGTAGATGAGGAGCAGAAGCACGTA
CAGTTCGCCAAGACTTTCCTCGTCGGCTGGGACAACTCTCTTTCCAACCA
GCAGGAGGTGGAGGACTACAGGCTGTCCAACGGGCTGGCCGCCGCCAACA
TGCTTGCTGAAATGAGCCAGGCGGACGCATCCGCCACGAGGAGGTGGAGG
ACTACAGGCTGTCCAACGGGCTGGCCGCCGCCAACATGCTTGCTGAAATG
AGCCAGGCGGACGCATCCGCCACGAGGAGCTTGGATGACAAGATTTGGCT
CTACAGCTACCGGTGCTTCGGCTTCGCCCTGTACGTGGGTGTGCAGGAGC
TTGGATGACAAGATTTGGCTCTACAGCTACCGGTGCTTCGGCTTCGCCCT
GTACGTGGGTGTGCAGATGGCCGCTTGGGCGGCGATCATCTTCCTCACGG
CCGAGTCCGACAACGTGGCGAGCGGCCTCGCGCAGCAGCTGCAGTCCGTG
GCCTGGATCTCCCAGGCGGCCGCCGTGATCTCGACTTCGATTGTGCCGGC
GACGGTGACCGTCATCAACGCCATCATGCCGATCATCATCAAGATGGCCG
CTTGGGCGGCGATCATCTTCCTCACGGCCGAGTCCGACAACGTGGCGAGC
GGCCTCGCGCAGCAGCTGCAGTCCGTGGCCTGGATCTCCCAGGCGGCCGC
CGTGATCTCGACTTCGATTGTGCCGGCGACGGTGACCGTCATCAACGCCA
TCATGCCGATCATCATCAAGGCCATCACCAAGCTGGAGAAGTGGGACATG
GAGAGGACCGTGACGTACATGCTCACGATTCGGATGTTCTTGGCCAAGAT
CTTGAACGCCTTCATCCAGGCCCTGTCGTACCTTCTCTTGGCCGACCCGT
ACCTTTTCGCCGGACAACAGCCATCACCAAGCTGGAGAAGTGGGACATGG
AGAGGACCGTGACGTACATGCTCACGATTCGGATGTTCTTGGCCAAGATC
TTGAACGCCTTCATCCAGGCCCTGTCGTACCTTCTCTTGGCCGACCCGTA
CCTTTTCGCCGGACAACAGTACACTATAATTATCAATCGGGGCCGCGTGG
AGCAGAACTTTGAGCCGTCAGGGTTTGACTGCCGGTTAGATCAAGTACAC
TATAATTATCAATCGGGGCCGCGTGGAGCAGAACTTTGAGCCGTCAGGGT
TTGACTGCCGGTTAGATCAA
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