mRNA_E-fasciculatus_F_contig12445.1876.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12445.1876.1
Unique NamemRNA_E-fasciculatus_F_contig12445.1876.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A6H5K1Z3_9PHAE (EamA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.600e-27
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    7 LVWSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            L+W+RAILLTTPTVATVGCSLTIPIAFVSDF MHGKVPNPLAVLGAFLVVGGFYFVS
Sbjct:  285 LLWARAILLTTPTVATVGCSLTIPIAFVSDFAMHGKVPNPLAVLGAFLVVGGFYFVS 341
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A836CFC6_9STRA (EamA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFC6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.440e-14
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    7 LVWSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            ++W+RA++LTTPTVA VG +LTIP AFV+DF++H  VP PL VLGA +VV GF  VS
Sbjct:  371 MLWARAVVLTTPTVAAVGLALTIPFAFVTDFLLHAMVPAPLEVLGAAMVVSGFAVVS 427
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A7S2CJ98_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJ98_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.690e-13
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   13 WSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            W+RA++LTTPTVATVG SLTIP+AFVSD  + GKVP+  A  GA  VV GF  V+
Sbjct:   27 WARAVVLTTPTVATVGLSLTIPLAFVSDLFVKGKVPDLWACGGAMFVVAGFSLVN 81
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A5D6YBD3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBD3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.010e-12
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   13 WSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            W+RA+LLT+PTVATVG SLT+P+A ++DFV H   P P+ +L + LV+ GF F++
Sbjct:  313 WARAVLLTSPTVATVGLSLTVPLAILADFVFHQSAPTPVTLLASALVLSGFVFIN 367
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A421EWT8_9STRA (EamA domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EWT8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.100e-11
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   13 WSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            W+RA+LLT+PTVATVG SLT+P+A V+DF  HG +P  + ++ + LV+ GF F++
Sbjct:  287 WARAVLLTSPTVATVGLSLTVPLAIVADFWFHGILPTNVTLVASALVISGFVFIN 341
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A662XRX8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRX8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.410e-11
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   13 WSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            W+RA+LLT+PTVATVG SLT+P+A V+DF  HG +P+ + +L + LV+ GF  ++
Sbjct:  338 WARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPSNVTLLASALVISGFVLIN 392
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A662X764_9STRA (F-box domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X764_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.580e-11
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   13 WSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            W+RA+LLT+PTVATVG SLT+P+A V+DF  HG +P+ + +L + LV+ GF  ++
Sbjct:  337 WARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPSNVTLLASALVISGFVLIN 391
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: H3GE17_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE17_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 2.580e-10
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 WSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            W+RA+LLT+PTVATVG SLT+P+A V+DF  HG +P  + +  + LV+ GF  ++
Sbjct:  325 WARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPTSVTLFASALVISGFVLIN 379
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A7S2GQ05_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQ05_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.450e-10
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 WSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            W+ A+L TTPTVATVG SLTIP+AF+SD ++ GK P  L+ LGA  VV GF  V+
Sbjct:  306 WALAVLYTTPTVATVGLSLTIPLAFLSDALLKGKAPTVLSALGAVSVVLGFVSVN 360
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BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Match: A0A2D4BFG5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFG5_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 3.500e-10
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 WSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFLVVGGFYFVS 177
            W+RA+LLT+PTVATVG SLT+P A +SD++ H  +P  + +L + LVV GF  ++
Sbjct:  321 WARAVLLTSPTVATVGLSLTVPFAILSDYMFHQMIPGVVTLLASLLVVSGFVLIN 375
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12445.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z3_9PHAE8.600e-2794.74EamA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CFC6_9STRA5.440e-1463.16EamA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2CJ98_9STRA5.690e-1363.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5D6YBD3_9STRA6.010e-1254.55Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A421EWT8_9STRA7.100e-1152.73EamA domain-containing protein n=3 Tax=Phytophthor... [more]
A0A662XRX8_9STRA7.410e-1152.73Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662X764_9STRA7.580e-1152.73F-box domain-containing protein n=1 Tax=Nothophyto... [more]
H3GE17_PHYRM2.580e-1050.91Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A7S2GQ05_9STRA3.450e-1060.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2D4BFG5_PYTIN3.500e-1050.91Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12445contigE-fasciculatus_F_contig12445:192..368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog2880.D8LMX8
KEGG koko:K15289
KEGG TC2.A.7.24.1,2.A.7.24.4,2.A.7.24.6
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0697@1,KOG2765@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927750.1465647-CDS-E-fasciculatus_F_contig12445:191..3681622927750.1465647-CDS-E-fasciculatus_F_contig12445:191..368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12445 192..368 +
1695995678.9866393-CDS-E-fasciculatus_F_contig12445:191..3681695995678.9866393-CDS-E-fasciculatus_F_contig12445:191..368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12445 192..368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12445.1876.1prot_E-fasciculatus_F_contig12445.1876.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12445 192..368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12445.1876.1

>prot_E-fasciculatus_F_contig12445.1876.1 ID=prot_E-fasciculatus_F_contig12445.1876.1|Name=mRNA_E-fasciculatus_F_contig12445.1876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=59bp
MFLVWSRAILLTTPTVATVGCSLTIPIAFVSDFVMHGKVPNPLAVLGAFL
VVGGFYFVS
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mRNA from alignment at E-fasciculatus_F_contig12445:192..368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12445.1876.1 ID=mRNA_E-fasciculatus_F_contig12445.1876.1|Name=mRNA_E-fasciculatus_F_contig12445.1876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=177bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12445:192..368+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTCTAGTGTGGTCGCGAGCGATTCTGCTCACGACCCCAACGGTGGC
CACCGTGGGATGCTCGCTCACGATCCCGATCGCGTTCGTGTCGGACTTCG
TCATGCACGGGAAGGTGCCAAACCCCCTCGCGGTGTTGGGGGCGTTCCTA
GTCGTGGGCGGCTTTTACTTCGTCAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12445:192..368+

>mRNA_E-fasciculatus_F_contig12445.1876.1 ID=mRNA_E-fasciculatus_F_contig12445.1876.1|Name=mRNA_E-fasciculatus_F_contig12445.1876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12445:192..368+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTCTAGTGTGGTCGCGAGCGATTCTGCTCACGACCCCAACGGTGGC
CACCGTGGGATGCTCGCTCACGATCCCGATCGCGTTCGTGTCGGACTTCG
TCATGCACGGGAAGGTGCCAAACCCCCTCGCGGTGTTGGGGGCGTTCCTA
GTCGTGGGCGGCTTTTACTTCGTCAGCATGTTTCTAGTGTGGTCGCGAGC
GATTCTGCTCACGACCCCAACGGTGGCCACCGTGGGATGCTCGCTCACGA
TCCCGATCGCGTTCGTGTCGGACTTCGTCATGCACGGGAAGGTGCCAAAC
CCCCTCGCGGTGTTGGGGGCGTTCCTAGTCGTGGGCGGCTTTTACTTCGT
CAGC
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