mRNA_E-fasciculatus_F_contig12431.1871.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12431.1871.1
Unique NamemRNA_E-fasciculatus_F_contig12431.1871.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: A0A835YLQ5_9STRA (DUF667 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLQ5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.480e-23
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:   10 AVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            A++ARQ+SDFP+ ++ FSPF   +LVSCGRENVRFWRVRR+ LPACPAVLN++AR   CTDLAF
Sbjct:  641 AILARQLSDFPVARVRFSPFHARQLVSCGRENVRFWRVRRKCLPACPAVLNEYARGAECTDLAF 704
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: T0QSG3_SAPDV (DUF667 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QSG3_SAPDV)

HSP 1 Score: 94.0 bits (232), Expect = 7.470e-21
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 SGLAVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            S L VVA+Q SDFPI+ + FSP++  RLVSCGREN+RFWRV+  HLP CP VL+++ARD   TD+AF
Sbjct:  470 STLPVVAKQTSDFPISTLRFSPYDSDRLVSCGRENIRFWRVKAGHLPGCPVVLHEYARDALFTDIAF 536
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: A0A067C9I8_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9I8_SAPPC)

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-20
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 SGLAVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            S L VVA+Q SDFPI+ + FSP++  RLVSCGREN+RFWR++  HLP CP VL+++ARD   TD+AF
Sbjct:  293 STLPVVAKQTSDFPISNLRFSPYDSDRLVSCGRENIRFWRLKAGHLPGCPVVLHEYARDTHFTDIAF 359
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.690e-19
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   79 RLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            RLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF
Sbjct:  829 RLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 869
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: A0A7S4E3P8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3P8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.090e-18
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   10 AVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            A++ARQ+SDF ++ + +SP+E  RLVSCGRENVRFWR+R  HLP CPA+L+++ARD   T L F
Sbjct:  401 AIIARQLSDFDVSAIAWSPYESDRLVSCGRENVRFWRLRHGHLPGCPALLHEYARDAKFTALCF 464
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: A0A2R5G5K0_9STRA (WD repeat-containing protein 90 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5K0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.180e-18
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 SGLAVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            S +++VARQ S+F I ++ FSP++  +LVSCGREN+RFWR+R RH+   P VLN+FAR    +DLAF
Sbjct:  408 SRISLVARQTSEFDIVRIRFSPYDSFQLVSCGRENIRFWRIRNRHMSGTPVVLNEFARKAVFSDLAF 474
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: F0Y7G3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7G3_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 2.450e-17
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   10 AVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            A +++Q+SDF +  + +SP+E+ RLVSCGRENVRFWR++  HLP CP  L+++ARD   TDL F
Sbjct:   51 ATLSKQLSDFDVVALKWSPYEQDRLVSCGRENVRFWRLKHGHLPGCPGALHEYARDATFTDLCF 114
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: A0A1V9YUM5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUM5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.360e-17
Identity = 35/63 (55.56%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   13 VVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            ++A+Q+SDF I+K+ FS ++  RLVSCGREN+RFWR++  HLP CP VL+++AR+   TD+AF
Sbjct:  313 IMAKQLSDFAISKIKFSHYDNDRLVSCGRENIRFWRIKSGHLPGCPIVLHEYARNNTFTDIAF 375
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: A0A1V9YPV8_9STRA (WD repeat-containing protein 90 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPV8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.570e-17
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   13 VVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            VVA+Q SDF I+++ FS +E  RLVSCGREN+RFWR++  HLP CP VL+++ARD   T +AF
Sbjct:  495 VVAKQTSDFAISRIYFSTYEPERLVSCGRENIRFWRLKGGHLPGCPVVLHEYARDNTFTAVAF 557
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BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Match: A0A485LFU9_9STRA (Aste57867_20150 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFU9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.170e-16
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   13 VVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACPAVLNDFARDLACTDLAF 201
            +VA+Q+ D  I+K+ FSP E  RLVSCGRE++RFWR++  HLP+CP VL+++ARD+  TD+ F
Sbjct:  516 LVAKQLCDVAISKLKFSPHEPDRLVSCGRESIRFWRIKAGHLPSCPVVLHEYARDVVFTDVDF 578
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12431.1871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLQ5_9STRA1.480e-2370.31DUF667 domain-containing protein n=1 Tax=Tribonema... [more]
T0QSG3_SAPDV7.470e-2162.69DUF667 domain-containing protein n=1 Tax=Saprolegn... [more]
A0A067C9I8_SAPPC1.900e-2061.19Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A6H5JNU2_9PHAE1.690e-19100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4E3P8_9STRA1.090e-1859.38Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A2R5G5K0_9STRA5.180e-1855.22WD repeat-containing protein 90 n=1 Tax=Hondaea fe... [more]
F0Y7G3_AURAN2.450e-1754.69Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1V9YUM5_9STRA3.360e-1755.56Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9YPV8_9STRA8.570e-1758.73WD repeat-containing protein 90 n=1 Tax=Achlya hyp... [more]
A0A485LFU9_9STRA1.170e-1655.56Aste57867_20150 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12431contigE-fasciculatus_F_contig12431:1035..1725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue7.1e-32
Seed eggNOG ortholog2880.D8LMS4
Preferred nameWDR90
KEGG koko:K11797,ko:K11798
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,KOG0644@2759,KOG3213@1,KOG3213@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927749.5346942-CDS-E-fasciculatus_F_contig12431:1034..11121622927749.5346942-CDS-E-fasciculatus_F_contig12431:1034..1112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12431 1035..1112 +
1695995678.6473553-CDS-E-fasciculatus_F_contig12431:1034..11121695995678.6473553-CDS-E-fasciculatus_F_contig12431:1034..1112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12431 1035..1112 +
1622927749.5476432-CDS-E-fasciculatus_F_contig12431:1602..17251622927749.5476432-CDS-E-fasciculatus_F_contig12431:1602..1725Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12431 1603..1725 +
1695995678.659543-CDS-E-fasciculatus_F_contig12431:1602..17251695995678.659543-CDS-E-fasciculatus_F_contig12431:1602..1725Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12431 1603..1725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12431.1871.1prot_E-fasciculatus_F_contig12431.1871.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12431 1035..1725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12431.1871.1

>prot_E-fasciculatus_F_contig12431.1871.1 ID=prot_E-fasciculatus_F_contig12431.1871.1|Name=mRNA_E-fasciculatus_F_contig12431.1871.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
SGLAVVARQISDFPITKMLFSPFEKLRLVSCGRENVRFWRVRRRHLPACP
AVLNDFARDLACTDLAF
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mRNA from alignment at E-fasciculatus_F_contig12431:1035..1725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12431.1871.1 ID=mRNA_E-fasciculatus_F_contig12431.1871.1|Name=mRNA_E-fasciculatus_F_contig12431.1871.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=691bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12431:1035..1725+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTGGGCTGGCGGTGGTTGCGCGGCAGATCAGCGACTTCCCCATCACCAA
GATGCTCTTCAGCCCTTTCGAAAAGCTGGTGCGTTCTTTCGTTTCGTTCA
TCTACTGCTGCTGCTGCTGCTGCTGATGATGATGATGTCGTCTTGTCGTT
GCCGTTTGATCCCCTATTAATAGCTGGCTGACGGAAGATGGTGGTACATC
GGCATTGTTGTGCTGTTGCTTTTTGTGTTGCTGCTGTTGTTGGTGGTGGA
AAGTTGAGTTGTTGGTTTGAATGCCCGCTTGTAGTGTGGATGGGGCAGCC
CTCCTTCTGGGAAAAACACGTGTAGCATTTCTTTCGCAAATCCATCTCTC
AGGTGGCAGACGCTACACGTACAGTTCACCTCTGCGAGTTTATCTCGCTG
TCGTCACTATTTGCTTACACCATTGCCCGCTCTCTGATTGTTGCTGTTGT
CGTTGTTGTTCTTCCTCGATTTGTTCGTTTCGATCGCCGTTTCATGATTC
GATTCGTCCGTGTGTTTCGCGTTTCGTCCGTTTCTCCCGTCTCCATTTAC
TCCCCCCGTGGTCCGTAGCGCCTGGTGTCGTGCGGCAGAGAGAACGTCCG
GTTCTGGCGCGTCCGGCGCAGGCACCTACCCGCCTGCCCGGCCGTGCTGA
ACGACTTCGCGCGGGACCTGGCGTGCACAGACCTGGCCTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12431:1035..1725+

>mRNA_E-fasciculatus_F_contig12431.1871.1 ID=mRNA_E-fasciculatus_F_contig12431.1871.1|Name=mRNA_E-fasciculatus_F_contig12431.1871.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12431:1035..1725+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTGGGCTGGCGGTGGTTGCGCGGCAGATCAGCGACTTCCCCATCACCAA
GATGCTCTTCAGCCCTTTCGAAAAGCTGTCTGGGCTGGCGGTGGTTGCGC
GGCAGATCAGCGACTTCCCCATCACCAAGATGCTCTTCAGCCCTTTCGAA
AAGCTGCGCCTGGTGTCGTGCGGCAGAGAGAACGTCCGGTTCTGGCGCGT
CCGGCGCAGGCACCTACCCGCCTGCCCGGCCGTGCTGAACGACTTCGCGC
GGGACCTGGCGTGCACAGACCTGGCCTTCCGCCTGGTGTCGTGCGGCAGA
GAGAACGTCCGGTTCTGGCGCGTCCGGCGCAGGCACCTACCCGCCTGCCC
GGCCGTGCTGAACGACTTCGCGCGGGACCTGGCGTGCACAGACCTGGCCT
TC
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