mRNA_E-fasciculatus_F_contig1243.1870.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1243.1870.1
Unique NamemRNA_E-fasciculatus_F_contig1243.1870.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1243.1870.1 vs. uniprot
Match: A0A6H5KAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ7_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.740e-33
Identity = 88/112 (78.57%), Postives = 90/112 (80.36%), Query Frame = -1 
Query:    1 PGGADSVGRSSPLSDSPLVTGLSFPLELAGYSGGGGG-GRVFGRTGSEGALSAHGSGPTAAVAAIFSGTRSEGKAGSDEGGQGTA---GAGFPGSAAGEGAGRGFASGLFGL 324
            PGGAD  GR+SPLSDSPLVTGLSFPLELAGY G      RVFGRTGSEGALSAHGSGP AA AAIFS TRSEGKAGSD+G Q       AGF GSAAGEGAG GFASGLFGL
Sbjct:  948 PGGADCGGRASPLSDSPLVTGLSFPLELAGYGGXXXXXARVFGRTGSEGALSAHGSGPAAAAAAIFSATRSEGKAGSDDGRQXXXXXXAAGFTGSAAGEGAGPGFASGLFGL 1059
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BLAST of mRNA_E-fasciculatus_F_contig1243.1870.1 vs. uniprot
Match: D7G531_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G531_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.790e-22
Identity = 75/113 (66.37%), Postives = 76/113 (67.26%), Query Frame = -1 
Query:    1 PGGADSVGRSSPLSDSPLVTGLSFPLELAGYSGGGGG-GRVFGRTGSEGALSAHGSGPTAAVAAIFSGTRSEGKAGSDEGGQGT----AGAGFPGSAAGEGAGRGFASGLFGL 324
            PGGADSVGR+SPLSDSPLVTGLSFPLE AGY G      RVFGRTGSEGALSAHGSGP AAV                     T    A AGF GSAAGEGAGRGF SGLFGL
Sbjct:  745 PGGADSVGRASPLSDSPLVTGLSFPLEFAGYGGXXXXXARVFGRTGSEGALSAHGSGPGAAVXXXXXXXXXXXXXXXXXXXXXTSATAAPAGFTGSAAGEGAGRGFVSGLFGL 857
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1243.1870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAZ7_9PHAE2.740e-3378.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G531_ECTSI2.790e-2266.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1243contigE-fasciculatus_F_contig1243:18160..18668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927749.235059-CDS-E-fasciculatus_F_contig1243:18159..186661622927749.235059-CDS-E-fasciculatus_F_contig1243:18159..18666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1243 18160..18666 +
1695995678.50121-CDS-E-fasciculatus_F_contig1243:18159..186661695995678.50121-CDS-E-fasciculatus_F_contig1243:18159..18666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1243 18160..18666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1243.1870.1prot_E-fasciculatus_F_contig1243.1870.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1243 18160..18666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1243.1870.1

>prot_E-fasciculatus_F_contig1243.1870.1 ID=prot_E-fasciculatus_F_contig1243.1870.1|Name=mRNA_E-fasciculatus_F_contig1243.1870.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=169bp
QPKQAGGEPSTGAFAGRAAREAGAGRSLPAFVAPGLALAAGTGENGGDGG
GGTATVRAQGALAPRPAKHPATATTAAIPGELERERQAGNERTVAERGRA
ADAVRPARQEPAAALATAGSIATPTAAAAADVHRRANSAAPDGGERRRIL
LKEVRRAADREPLSTRKNS
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mRNA from alignment at E-fasciculatus_F_contig1243:18160..18668+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1243.1870.1 ID=mRNA_E-fasciculatus_F_contig1243.1870.1|Name=mRNA_E-fasciculatus_F_contig1243.1870.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=509bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1243:18160..18668+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCCCAAACAAGCCGGAGGCGAACCCTCGACCGGCGCCTTCGCCGGCCG
CGCTGCCAGGGAAGCCGGCGCCGGCCGTTCCCTGCCCGCCTTCGTCGCTC
CCGGCCTTGCCCTCGCTGCGGGTACCGGAGAAAATGGCGGCGACGGCGGC
GGTGGGACCGCTACCGTGCGCGCTCAGGGCGCCCTCGCTCCCCGTCCTGC
CAAACACCCGGCCACCGCCACCACCGCCGCTATACCCGGCGAGCTCGAGC
GGGAACGACAGGCCGGTAACGAGAGGACTGTCGCTGAGCGGGGACGAGCG
GCCGACGCTGTCCGCCCCGCCAGGCAAGAACCCGCCGCCGCCCTCGCTAC
CGCCGGATCCATAGCCACCCCCACGGCCGCCGCCGCCGCCGACGTCCACC
GAAGAGCCAATTCGGCTGCCCCCGATGGCGGCGAACGGCGGCGAATCCTG
CTGAAGGAGGTTCGGCGCGCTGCCGACCGGGAACCCCTGTCCACCCGGAA
GAATTCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1243:18160..18668+

>mRNA_E-fasciculatus_F_contig1243.1870.1 ID=mRNA_E-fasciculatus_F_contig1243.1870.1|Name=mRNA_E-fasciculatus_F_contig1243.1870.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1243:18160..18668+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCCCAAACAAGCCGGAGGCGAACCCTCGACCGGCGCCTTCGCCGGCCG
CGCTGCCAGGGAAGCCGGCGCCGGCCGTTCCCTGCCCGCCTTCGTCGCTC
CCGGCCTTGCCCTCGCTGCGGGTACCGGAGAAAATGGCGGCGACGGCGGC
GGTGGGACCGCTACCGTGCGCGCTCAGGGCGCCCTCGCTCCCCGTCCTGC
CAAACACCCGGCCACCGCCACCACCGCCGCTATACCCGGCGAGCTCGAGC
GGGAACGACAGGCCGGTAACGAGAGGACTGTCGCTGAGCGGGGACGAGCG
GCCGACGCTGTCCGCCCCGCCAGGCAAGAACCCGCCGCCGCCCTCGCTAC
CGCCGGATCCATAGCCACCCCCACGGCCGCCGCCGCCGCCGACGTCCACC
GAAGAGCCAATTCGGCTGCCCCCGATGGCGGCGAACGGCGGCGAATCCTG
CTGAAGGAGGTTCGGCGCGCTGCCGACCGGGAACCCCTGTCCACCCGGAA
GAATTCGCAGCCCAAACAAGCCGGAGGCGAACCCTCGACCGGCGCCTTCG
CCGGCCGCGCTGCCAGGGAAGCCGGCGCCGGCCGTTCCCTGCCCGCCTTC
GTCGCTCCCGGCCTTGCCCTCGCTGCGGGTACCGGAGAAAATGGCGGCGA
CGGCGGCGGTGGGACCGCTACCGTGCGCGCTCAGGGCGCCCTCGCTCCCC
GTCCTGCCAAACACCCGGCCACCGCCACCACCGCCGCTATACCCGGCGAG
CTCGAGCGGGAACGACAGGCCGGTAACGAGAGGACTGTCGCTGAGCGGGG
ACGAGCGGCCGACGCTGTCCGCCCCGCCAGGCAAGAACCCGCCGCCGCCC
TCGCTACCGCCGGATCCATAGCCACCCCCACGGCCGCCGCCGCCGCCGAC
GTCCACCGAAGAGCCAATTCGGCTGCCCCCGATGGCGGCGAACGGCGGCG
AATCCTGCTGAAGGAGGTTCGGCGCGCTGCCGACCGGGAACCCCTGTCCA
CCCGGAAGAATTCG
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