mRNA_E-fasciculatus_F_contig12425.1866.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12425.1866.1
Unique NamemRNA_E-fasciculatus_F_contig12425.1866.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12425.1866.1 vs. uniprot
Match: D7FZI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 7.180e-12
Identity = 90/149 (60.40%), Postives = 91/149 (61.07%), Query Frame = 1 
Query:    1 PGIG-GDSRRGNGRKWSSSDGXXXXXXXXGLFAVGEASAARYVPAATISCDGVTPLPAGRGGGPREAGSRRGSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PHSSSLSASSPFPNLLDGADDSASS 432
            PG G G SR  NGRK   S  XXXXXXXX  FAVGEAS AR V AAT  CDGVTPLPAGRGGGPREAG+      XXXXXXXXX         XXX                  XXXXXX    PHS SLSASSPF NLLDG DDS SS
Sbjct:  215 PGAGVGGSRWSNGRK---SXXXXXXXXXXXSFAVGEASVARPV-AATFGCDGVTPLPAGRGGGPREAGAXXXXXXXXXXXXXXXSAGREGRAGXXXGEGVSGGRADYHSLCFSSXXXXXXXXXXPHSGSLSASSPFLNLLDGGDDSTSS 359
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BLAST of mRNA_E-fasciculatus_F_contig12425.1866.1 vs. uniprot
Match: A0A6H5KEK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.090e-10
Identity = 85/152 (55.92%), Postives = 86/152 (56.58%), Query Frame = 1 
Query:    1 PGIG-GDSRRGNGRKWSSSDGXXXXXXXXGLFAVGEASAARYVPAATISCDGVTPLPAGRGGGPREAGSRRGSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP----HSSSLSASSPFPNLLDGA-DDSASSTS 438
            PG G GDSR GNGRK        XXXXXX  +A GEAS AR V AA I CDGVTPLPA RGGGPRE G       XXXXXXXXX                              XXXXXX     HSSSLSASSPFPNLLDG  DDS SSTS
Sbjct:  771 PGAGVGDSRWGNGRK-------SXXXXXXXPYAAGEASVARSV-AAAIGCDGVTPLPAERGGGPREDGXXXXXXXXXXXXXXXXSAGRGGRGASAVGERVPGGRADYHSLCFSSXXXXXXXXXXXHSSSLSASSPFPNLLDGGVDDSTSSTS 914
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12425.1866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZI8_ECTSI7.180e-1260.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEK5_9PHAE4.090e-1055.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12425contigE-fasciculatus_F_contig12425:1..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_001570.1
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927748.6692328-CDS-E-fasciculatus_F_contig12425:0..4411622927748.6692328-CDS-E-fasciculatus_F_contig12425:0..441Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12425 1..441 +
1695995678.4289367-CDS-E-fasciculatus_F_contig12425:0..4411695995678.4289367-CDS-E-fasciculatus_F_contig12425:0..441Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12425 1..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12425.1866.1prot_E-fasciculatus_F_contig12425.1866.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12425 1..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12425.1866.1

>prot_E-fasciculatus_F_contig12425.1866.1 ID=prot_E-fasciculatus_F_contig12425.1866.1|Name=mRNA_E-fasciculatus_F_contig12425.1866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=147bp
PGIGGDSRRGNGRKWSSSDGGGSGSGGGGLFAVGEASAARYVPAATISCD
GVTPLPAGRGGGPREAGSRRGSFSSSYGGGGGSSAGRGGGGSGGRADYHS
LCFSSSSSSSGNTTAGNTTPHSSSLSASSPFPNLLDGADDSASSTS*
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mRNA from alignment at E-fasciculatus_F_contig12425:1..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12425.1866.1 ID=mRNA_E-fasciculatus_F_contig12425.1866.1|Name=mRNA_E-fasciculatus_F_contig12425.1866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=441bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12425:1..441+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGGTATCGGTGGTGACAGCAGGCGGGGCAACGGGAGGAAATGGTCTTC
CTCAGACGGCGGCGGCAGCGGCAGCGGCGGCGGCGGGCTGTTTGCCGTGG
GCGAGGCTTCCGCGGCCAGATACGTGCCTGCTGCTACTATCAGCTGCGAC
GGCGTCACTCCGCTGCCTGCCGGGCGAGGGGGGGGACCCCGGGAAGCCGG
TTCAAGAAGAGGTAGTTTTAGCTCCTCCTACGGCGGCGGGGGCGGGAGTT
CGGCCGGGCGCGGGGGGGGCGGGTCGGGAGGGCGCGCTGACTACCACTCG
CTCTGCTTCTCGAGCTCGTCTTCTAGCAGTGGCAACACCACGGCCGGCAA
CACCACGCCGCATAGCAGTTCGCTGTCGGCGTCGTCGCCTTTCCCGAACC
TGCTGGACGGGGCCGACGACTCGGCTTCCTCCACGTCTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12425:1..441+

>mRNA_E-fasciculatus_F_contig12425.1866.1 ID=mRNA_E-fasciculatus_F_contig12425.1866.1|Name=mRNA_E-fasciculatus_F_contig12425.1866.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=882bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12425:1..441+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGGTATCGGTGGTGACAGCAGGCGGGGCAACGGGAGGAAATGGTCTTC
CTCAGACGGCGGCGGCAGCGGCAGCGGCGGCGGCGGGCTGTTTGCCGTGG
GCGAGGCTTCCGCGGCCAGATACGTGCCTGCTGCTACTATCAGCTGCGAC
GGCGTCACTCCGCTGCCTGCCGGGCGAGGGGGGGGACCCCGGGAAGCCGG
TTCAAGAAGAGGTAGTTTTAGCTCCTCCTACGGCGGCGGGGGCGGGAGTT
CGGCCGGGCGCGGGGGGGGCGGGTCGGGAGGGCGCGCTGACTACCACTCG
CTCTGCTTCTCGAGCTCGTCTTCTAGCAGTGGCAACACCACGGCCGGCAA
CACCACGCCGCATAGCAGTTCGCTGTCGGCGTCGTCGCCTTTCCCGAACC
TGCTGGACGGGGCCGACGACTCGGCTTCCTCCACGTCTTAGCCCGGTATC
GGTGGTGACAGCAGGCGGGGCAACGGGAGGAAATGGTCTTCCTCAGACGG
CGGCGGCAGCGGCAGCGGCGGCGGCGGGCTGTTTGCCGTGGGCGAGGCTT
CCGCGGCCAGATACGTGCCTGCTGCTACTATCAGCTGCGACGGCGTCACT
CCGCTGCCTGCCGGGCGAGGGGGGGGACCCCGGGAAGCCGGTTCAAGAAG
AGGTAGTTTTAGCTCCTCCTACGGCGGCGGGGGCGGGAGTTCGGCCGGGC
GCGGGGGGGGCGGGTCGGGAGGGCGCGCTGACTACCACTCGCTCTGCTTC
TCGAGCTCGTCTTCTAGCAGTGGCAACACCACGGCCGGCAACACCACGCC
GCATAGCAGTTCGCTGTCGGCGTCGTCGCCTTTCCCGAACCTGCTGGACG
GGGCCGACGACTCGGCTTCCTCCACGTCTTAG
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