mRNA_E-fasciculatus_F_contig12420.1863.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12420.1863.1
Unique NamemRNA_E-fasciculatus_F_contig12420.1863.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12420.1863.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 5.110e-89
Identity = 159/164 (96.95%), Postives = 160/164 (97.56%), Query Frame = 1 
Query:   16 LTEAVLPAGEGLDTSSATTGGTGGEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAMLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLEHYQFKLRIAERKGREAKVAKMHKKIDRMRRQLAGETLGSGDEGEETGMSE 507
            LTEAVLPAGEGLDTSSATTGG  GEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTA+LTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLE YQFKLRIAERKGRE KVAKMHKKIDRMRRQLAGETLGSGDEGEETGMSE
Sbjct: 1537 LTEAVLPAGEGLDTSSATTGGXXGEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEETGMSE 1700
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12420.1863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHH6_ECTSI5.110e-8996.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12420contigE-fasciculatus_F_contig12420:351..3786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.4
Seed ortholog evalue4.8e-78
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size566
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12420.1863.1prot_E-fasciculatus_F_contig12420.1863.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12420 351..3784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927748.4474514-CDS-E-fasciculatus_F_contig12420:350..4551622927748.4474514-CDS-E-fasciculatus_F_contig12420:350..455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 351..455 +
1695995678.2805781-CDS-E-fasciculatus_F_contig12420:350..4551695995678.2805781-CDS-E-fasciculatus_F_contig12420:350..455Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 351..455 +
1622927748.46313-CDS-E-fasciculatus_F_contig12420:1247..14001622927748.46313-CDS-E-fasciculatus_F_contig12420:1247..1400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 1248..1400 +
1695995678.2946122-CDS-E-fasciculatus_F_contig12420:1247..14001695995678.2946122-CDS-E-fasciculatus_F_contig12420:1247..1400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 1248..1400 +
1622927748.4749596-CDS-E-fasciculatus_F_contig12420:2514..26011622927748.4749596-CDS-E-fasciculatus_F_contig12420:2514..2601Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 2515..2601 +
1695995678.313267-CDS-E-fasciculatus_F_contig12420:2514..26011695995678.313267-CDS-E-fasciculatus_F_contig12420:2514..2601Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 2515..2601 +
1622927748.4850595-CDS-E-fasciculatus_F_contig12420:3273..34201622927748.4850595-CDS-E-fasciculatus_F_contig12420:3273..3420Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 3274..3420 +
1695995678.3234599-CDS-E-fasciculatus_F_contig12420:3273..34201695995678.3234599-CDS-E-fasciculatus_F_contig12420:3273..3420Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 3274..3420 +
1622927748.494273-CDS-E-fasciculatus_F_contig12420:3712..37841622927748.494273-CDS-E-fasciculatus_F_contig12420:3712..3784Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 3713..3784 +
1695995678.3332167-CDS-E-fasciculatus_F_contig12420:3712..37841695995678.3332167-CDS-E-fasciculatus_F_contig12420:3712..3784Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12420 3713..3784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12420.1863.1

>prot_E-fasciculatus_F_contig12420.1863.1 ID=prot_E-fasciculatus_F_contig12420.1863.1|Name=mRNA_E-fasciculatus_F_contig12420.1863.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=188bp
TTSAALTEAVLPAGEGLDTSSATTGGTGGEGESAKSRPFSPRSDFMASRV
RLCSAGSDVTIGTDASRNLHDSGSTSTTAMLTNFAEVTACTANFCFKLDA
VSAPGIPEVERQRMEEKLEHYQFKLRIAERKGREAKVAKMHKKIDRMRRQ
LAGETLGSGDEGEETGMSESESDSDAELQLRQRTGAGW
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mRNA from alignment at E-fasciculatus_F_contig12420:351..3786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12420.1863.1 ID=mRNA_E-fasciculatus_F_contig12420.1863.1|Name=mRNA_E-fasciculatus_F_contig12420.1863.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3436bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12420:351..3786+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGACCTCGGCGGCGTTGACGGAGGCGGTGCTGCCGGCTGGCGAGGGGTT
GGACACCTCGTCGGCGACGACCGGCGGAACCGGGGGCGAGGGGGAGTCTG
CCAAGGTGCGGAGCGGTGGCGGAACCAAACACATTTGTCTTGTCGCCTCC
ATTCTCGTGCGATTCAAACACCGGGCGGGAGCTTTAGACTCGATTGCAGT
TCACTGATGTATATTCAATTCGAATTCTTGCATAAATAGTTCGAATAAGT
AGTAAAAAACATGATCTGTTGTCGATGCACACGCGAAAAGTATCAACCTT
GTCGAGCCTCAAAAACATTATGGTGTCGTACATAAAATATGTTGAAAGTT
TAGCGAACAGGCGCCAGCGAACGCGTCGCAAGACCACGCTGTGTCTGCTG
TGCCGCTGTTTTGCACCTCGAACCGGCAACGGGGTCCCATACACGTGTTT
TTTTGTTGTAGCGCATATGGGTTGTTTTGATTGTAAGGGGATCCCTCGTG
CACTTTGTTAGGGGAGGTTTAGGGAGAGCGAAAGAAGATGCGGTATTATT
GTTGTGCCTCGACACTATAATAGCTTTCGAGATGCGGCACGCCAGCAGGT
GCGGCAGCTAGTTCGTCAGAACGTATCTAGTGATTTAGCTCCGCTAGCAG
GCGTGGCACATGCGAATGCCAGGACTTTTGTTTTGCGTAATGAGGGCAAC
AACGCTGGGAGAGGTGTCATCTGCACCTTGCGCTCTTCACGCAGAAACAG
CTTAGCGGAGGACTGACACAAGTAGCAGCCATGGGGGGTGACCCTTTCTT
GCCTGACTGTTTTTCCCCCCCGCCCCCCCCCTGCCCGCCGCCGCCGCCGC
CGCCGCCGCTTCCTTCACACCCTGATCTCATGCCCGTCGTACGATAGTCG
AGGCCGTTCAGCCCACGGTCGGATTTCATGGCTTCCCGCGTCAGGCTGTG
CAGCGCGGGGTCTGACGTGACGATTGGGACCGACGCAAGCCGTAACCTTC
ACGACTCGGGATCGACGTCCACGACGGCAATGCTCACCAACTTTGCGGAG
GTCCGTCATCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTGACAA
GACGCCGTTACCGATGTTCTTTGTGTTTAGCACCTTTACCAGCTGGCATA
ACTGATTTCTTCCTTACTGCAAAGACTTCCACCCATCCCTTCGATTGTGG
CTATATCTCGAACGGGACTGTAGTCTTTCTGTGTTTGTACTTGTATTTTT
TCCTAATAATATCAGCCGGTTTTTCCTCTGCCACTCGTCACAAGTAACCT
ACACTGCACAAGTTTTGTTCTTGTGAGTAGCACCAGCTGGTGTCATGACT
GATAAATAATTCAACCGGTTTTTCTTCTGCCAATCGTGTGTGTCCACGGG
TCGGAGCTCATAACTCCTAATCGGTAGAAATGCTGTGAGTGTGAGCACTG
GTTTAACGTGATGACAAAAAAAAAAGAAAAAACATCACCAAGAACCCTAC
GGCGGTTCTTGTGGTTACCACCAGTTGGCACCACTGATATTTATGCATGG
TTCAGCCGATTTTTCTTCTGCCAATCGCCACAAGAAACCTAGAGATGTGT
GTGTGAAGAACACCAGCTGGCGTCACTGTTTAACAGCAAGTCAGTGTATA
TTGGTTTAAATAGCCGTAACGTAGATATCGAGCCGGTTTTCTCTACCTCA
CCTCTGTGAAAACTTCGACACATCCCCTCCGACTGCTGTGGTTATATCCC
GGACAGACACACGTAGAATGTAGTAAATAGTTAGGGCCGGCCGGGCATGC
CGAAGAGGTTCCGGGAGTTGGGTAGGAAGAGGAAGCTCACACAAGTGGTG
TGCGAGTATTGCATGGATGCGCGCGCGTGGTGGTGTCGATGGTTGTTGCG
TGTTCTGTTGAAAATGGTGGTATTCAAGGCAAGACCTTGTTGTCAATATG
GGGCGTCCTCGTGATAGTTTGGTCCTCAACCGCGCCACAGCTGTTTCGTG
TTGTGGTCGGGCTCGTGATCTTGGTTGATGCGCCCCATTTTTTCCTTCTA
TCCTACCCTGTTGGGTGGCCTACGCTTCCGTGCTGTCTGGTTCGCTCTCT
GCTGCCTGTGTCTCACTATACTGCCGTGGTCGATTGTCTGGGCTCTCTTT
TGTTGCTATGATAGGTCACCGCCTGCACGGCGAACTTCTGCTTCAAGCTG
GACGCCGTTTCCGCCCCCGGCATCCCCGAGGTGGAGCGTCAACGCATGGA
GGTAGGTTTCTCTCTCTGCACGCCCACCCACCCCCGTTTTTTTTTTTTTT
TTTCCTCCCATCATTGGACTCTCGTATGTATGTGACCAAACATACCAACG
CTTGGCGGGGAGATGTTTACCAACGCGTGGGAGAAAATCTCACCGCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCGACCATGATTTTCACAACGTTTCGAA
ACGATCCCACTGCCGCTTTTTCCTGCGGCAAAACATGTTTTTGTGCTTGG
CACCAGGTGGCATCACTGTTTTAATTTCAGTGTACAGGCTTAAAAATAGA
CTCAACATATGCCAGTATCCTGCAGGTTTCTCCCCCATTCACTGTAATAA
GGACTTGTACCCAATCATCTCCTTTGGACTGCTGTTGTTTTCTCTCGAAC
AGGCAGTCTTTCTCTCTGATCGCATGCATATGTTCGAAAAACATGTCCTG
ATCGGCGACTGTTTATTTCCGAGTCCGTGGCGTGTGACAACGAGCGCACC
TGGTGAATTGGCCACAGGGGTTGGGGCGTTTTCTTGCTGCTGTGAAACGT
TTACTAAATTATGGTTGATGACTACGTGTTCAAGAAACTCGCAGAGGTTC
GTCGGGGTTGGCGCTGTACCTACTCCTGTACTTTCTCACTGCCAAATGCC
GCTGGTCCTGACTTGCTTGCCAGGAAAAACTGGAGCACTATCAGTTCAAG
CTTCGCATCGCGGAGCGGAAAGGGCGAGAGGCAAAGGTGGCCAAGATGCA
CAAGAAGATAGACCGGATGCGGCGGCAGTTGGCCGGCGAAACTCTCGGGA
GCGGCGACGAAGGGGAGGAGGTACGCCAGATAGGAAAGGGGGGGGGGAGG
TGACGAGGAGTCTTTCGCGTTGGCTGCGTCGTTGTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCCGCCCA
AATAACGCTCGCGTCTGTCAGACCTTCTTCCGCTACAAAAGTAGTCAGAT
GTACGGTTTAGTCCCCCTATCGCCCTCGCGCCCTGCTCTTTCTCAGCCAC
GTACCTACGCATATGTACCCTCGTCGTGATTTTGGGGCTCTTCTTTTTTT
TTTTCGTTTCAGACCGGTATGAGCGAAAGCGAGTCCGACAGCGACGCCGA
GCTGCAGCTGCGCCAGCGGACCGGCGCGGGTTGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12420:351..3786+

>mRNA_E-fasciculatus_F_contig12420.1863.1 ID=mRNA_E-fasciculatus_F_contig12420.1863.1|Name=mRNA_E-fasciculatus_F_contig12420.1863.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1128bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12420:351..3786+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGACCTCGGCGGCGTTGACGGAGGCGGTGCTGCCGGCTGGCGAGGGGTT
GGACACCTCGTCGGCGACGACCGGCGGAACCGGGGGCGAGGGGGAGTCTG
CCAAGACGACCTCGGCGGCGTTGACGGAGGCGGTGCTGCCGGCTGGCGAG
GGGTTGGACACCTCGTCGGCGACGACCGGCGGAACCGGGGGCGAGGGGGA
GTCTGCCAAGTCGAGGCCGTTCAGCCCACGGTCGGATTTCATGGCTTCCC
GCGTCAGGCTGTGCAGCGCGGGGTCTGACGTGACGATTGGGACCGACGCA
AGCCGTAACCTTCACGACTCGGGATCGACGTCCACGACGGCAATGCTCAC
CAACTTTGCGGAGTCGAGGCCGTTCAGCCCACGGTCGGATTTCATGGCTT
CCCGCGTCAGGCTGTGCAGCGCGGGGTCTGACGTGACGATTGGGACCGAC
GCAAGCCGTAACCTTCACGACTCGGGATCGACGTCCACGACGGCAATGCT
CACCAACTTTGCGGAGGTCACCGCCTGCACGGCGAACTTCTGCTTCAAGC
TGGACGCCGTTTCCGCCCCCGGCATCCCCGAGGTGGAGCGTCAACGCATG
GAGGTCACCGCCTGCACGGCGAACTTCTGCTTCAAGCTGGACGCCGTTTC
CGCCCCCGGCATCCCCGAGGTGGAGCGTCAACGCATGGAGGAAAAACTGG
AGCACTATCAGTTCAAGCTTCGCATCGCGGAGCGGAAAGGGCGAGAGGCA
AAGGTGGCCAAGATGCACAAGAAGATAGACCGGATGCGGCGGCAGTTGGC
CGGCGAAACTCTCGGGAGCGGCGACGAAGGGGAGGAGGAAAAACTGGAGC
ACTATCAGTTCAAGCTTCGCATCGCGGAGCGGAAAGGGCGAGAGGCAAAG
GTGGCCAAGATGCACAAGAAGATAGACCGGATGCGGCGGCAGTTGGCCGG
CGAAACTCTCGGGAGCGGCGACGAAGGGGAGGAGACCGGTATGAGCGAAA
GCGAGTCCGACAGCGACGCCGAGCTGCAGCTGCGCCAGCGGACCGGCGCG
GGTTGGACCGGTATGAGCGAAAGCGAGTCCGACAGCGACGCCGAGCTGCA
GCTGCGCCAGCGGACCGGCGCGGGTTGG
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