mRNA_E-fasciculatus_F_contig1242.1861.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1242.1861.1
Unique NamemRNA_E-fasciculatus_F_contig1242.1861.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: D7FVL8_ECTSI (Cnd3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL8_ECTSI)

HSP 1 Score: 569 bits (1466), Expect = 8.250e-192
Identity = 297/321 (92.52%), Postives = 307/321 (95.64%), Query Frame = 1 
Query:    1 MPRVKRESSASAADARKEQKMAPEAQTCCQAVRKLFVEAQRTVQCHQRCSDSLPRLLSKHESAWDEYFSCLTRILVISKRDPGVERLVRFVSLAAGSDMDASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNVVNVEVWACTHTHTPL 963
            MPRVKRESSA+AADARKEQK+APE Q    AVRKLFVEAQRTVQCHQRCSDSLPRLLSKHESAWDEYFSCLTRILV+SKRDPGVERLV FVSLAAGSD++ASLFDRT+EFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSEL+RAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSK LSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDP+ELLQR+NVVNVEV +     T L
Sbjct:    1 MPRVKRESSAAAADARKEQKLAPEVQ----AVRKLFVEAQRTVQCHQRCSDSLPRLLSKHESAWDEYFSCLTRILVVSKRDPGVERLVHFVSLAAGSDVNASLFDRTVEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELVRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKLLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPMELLQRLNVVNVEVMSAGEKETRL 317
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: A0A6H5L8W1_9PHAE (Cnd3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W1_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 6.180e-106
Identity = 180/210 (85.71%), Postives = 185/210 (88.10%), Query Frame = 1 
Query:  301 ASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNVVNVE 930
            ASLFDRT+EFLLL+SGAADKAVRFRCCQLLG LTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQ                       VSSK LSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDP+ELLQR++VVNVE
Sbjct:   13 ASLFDRTVEFLLLYSGAADKAVRFRCCQLLGALTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQ-----------------------VSSKLLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPMELLQRLDVVNVE 199
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: A0A835YU77_9STRA (Nuclear condensing complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU77_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.540e-37
Identity = 104/313 (33.23%), Postives = 150/313 (47.92%), Query Frame = 1 
Query:   61 MAPEAQTCCQAVRKLFVEAQRTVQCHQRCSDSLPRLLSKHESAWDEYFSCLTRILVISKRDPGVERLVRFVSLAA----GSDMDASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKR-------------------GLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNVVNVE 930
            M P       A RKLF +AQR+   H RC+ +L R LS   +   E F+C+ R+L + KR+P  ERLV F++ AA    G + D  L    +EFL+  +GA D+A R R C +   +         + E+        +  R+ DKV AVR  A  AL   Q+   AG            + L+RA  +D+S DVR+AA+ ++  +  +   ++ RT+D  E VRR A++ L +     +L+  QRV LV                     GL D S AVV ACR MVC  W R A    + LL  ++V+  E
Sbjct:   27 MRPNVPEAVAAFRKLFADAQRSTANHTRCAAALRRALSARPALTTELFACIDRVLTVFKREPAAERLVAFIARAACLPGGDEGDVELAAFVLEFLVSRAGAPDRAARLRACHITAAVLEGLGADADIAEDLWQAVTAAMAARVSDKVPAVRAAACAALLRLQYAEAAGGCA-------ATAALLRAARADASKDVRKAAMQSLQISKAVLPDIMRRTRDTSEDVRRTAYQVLADKAPLVYLTLPQRVALVXXXXXXXXXXXXXXXXXXVEWGLKDRSPAVVAACRGMVCRTWLRGAG-GAVPLLGLLDVIQFE 331
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: A0A8J1T631_OWEFU (Ofus.G011148 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1T631_OWEFU)

HSP 1 Score: 140 bits (352), Expect = 3.150e-33
Identity = 97/307 (31.60%), Postives = 154/307 (50.16%), Query Frame = 1 
Query:   88 QAVRKLFVEAQRTVQCHQRCSDSLPRLLSKH--ESAWDEYFSCLTRILVISKRDPGVERLVRFVSLAAGS--------------------------DMDASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNVVN 924
            Q ++ +F E QR +Q H +   SL ++      +  W+E+   L   +++ KR+P VER + FV+    S                          + +  L  +   FLL    A D+AVRFRCCQ++  L     +  Q+D++  D   + +L RLRDK   VRVQAV AL   Q      D +D  KD  V    +  + SD +PDVR+A L+ +  +      ++ RT+D KESVR+ A++ + E V  K L+  QRV L++ GL+D ++ V DAC+  +   W R    + ++LL+ ++V N
Sbjct:    4 QTLKDIFTECQRGLQSHGKLIKSLKKIYDSMNLDDFWNEFQGLLKYSMIVFKREPAVERTLDFVAKFTTSLSVQAKENEKPEEAKXXXXXXXXXXMEEENKLLLKLFGFLLESHNARDRAVRFRCCQMINKLLNNLGENAQIDDDLYDKVYESMLRRLRDKFPIVRVQAVTALARLQ------DPQD--KDCPVIEAYLFLLGSDPNPDVRRAVLSYIACSTKTLPAILERTRDAKESVRKLAYQVIAEKVHIKALTIAQRVRLLQDGLNDRTDLVKDACKGKLLQSWLRVWGGNVLDLLKCLDVEN 302
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: UPI00109B8D26 (condensin complex subunit 3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B8D26)

HSP 1 Score: 138 bits (348), Expect = 9.840e-33
Identity = 98/304 (32.24%), Postives = 154/304 (50.66%), Query Frame = 1 
Query:   85 CQAVRKLFVEAQRTVQCHQRCSDSLPRL---LSKHESAWDEYFSCLTRILVISKRDPGVERLVRFVS------------------LAAGSD--MDASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDAC-RFMVCVHWFRDAEYDPIELLQRMNVVN 924
            C+  R +F EAQR  Q H +   +L R+    S  E   + +   L   +++ KR+P VER++ FV+                  L+ G D  MD       I F+L    A DKA RFR CQL+  + +       +D++  D  +  +L RL DK+  +RVQAV AL   Q      D  D+  +  V +  ++ + +DSS DVR+A L  +  +     ++++RT DV ESVR+ AFR L E V  + LS   RV L++ GL+D S A+ D C + ++   W +  + + I+LL+ ++V N
Sbjct:    5 CETXRNVFEEAQRGFQHHAKLIRALKRIQDGFSSQEKFMEAFIDHLRHAMIVFKREPAVERIIEFVAKYSTSNVHYEAPSQKNGNLSDGEDAPMDNPFLQTLIVFILDCHDAKDKAXRFRSCQLIHKILSNMDDEACIDDDMADSILKHMLKRLTDKIPPIRVQAVYALSRLQ------DPTDS--ECPVMTSYLQMIATDSSADVRKAVLLNLALSRKSLSEIIVRTHDVTESVRKIAFRILAEKVKIQSLSIALRVQLLQDGLNDRSAAIQDVCAKSLLQGSWLKSFQGNVIDLLKSLDVEN 300
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: UPI00112ED6C8 (condensin complex subunit 3 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112ED6C8)

HSP 1 Score: 138 bits (347), Expect = 1.320e-32
Identity = 95/292 (32.53%), Postives = 153/292 (52.40%), Query Frame = 1 
Query:   94 VRKLFVEAQRTVQCHQRCSDSLPRLLSKHESA---WDEYFSCLTRILVISKRDPGVERLVRFVSLAAGS------------DMDASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNVVN 924
            ++  F  AQ+  Q H +   +L    +K E     ++E+   L   ++I KR+P VER++ FV+    S            + + S  +    FLL    A  +AVRFR CQ++  L     +  Q+D++  D   D +L RLRDKV  VR+QAV AL   Q      D +D  K+  V +  +  + +DS+P+VR+A L+ +  +     ++V RT DVK+ VR+ A++ L E +  + LS  QRV L+++GL+D S+ V +  +  +   W R  E D +ELL R++V N
Sbjct:   10 IKDAFDLAQKPHQNHAKLVSALKSTYNKMEDKTIFYEEFVHFLKYPMIIYKREPAVERVMDFVARFITSFYQPEKENCTEEEDEHSPVNYLFNFLLKSHNANSQAVRFRACQMVNKLLGSLPENAQIDDDLFDKIHDAMLVRLRDKVPNVRIQAVLALARLQ------DPQD--KNCPVTNAYLHLIENDSNPEVRRAVLSCIAPSAKTLQEIVGRTMDVKDVVRKLAYQVLSEKIHMRALSIAQRVQLLQQGLNDRSDGVKEVIQKKILQTWLRYCEGDVLELLHRLDVEN 293
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: A0A210R2D6_MIZYE (Condensin complex subunit 3 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R2D6_MIZYE)

HSP 1 Score: 137 bits (346), Expect = 1.920e-32
Identity = 89/295 (30.17%), Postives = 158/295 (53.56%), Query Frame = 1 
Query:   91 AVRKLFVEAQRTVQCHQRCSDSLPRLLSKHESA--WDEYFSCLTRILVISKRDPGVERLVRFVS-------------LAAGSDMDA----SLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNV 918
            +++++F + Q ++Q H +   SL ++  + E A  W E+   +   +++  R+P +ER + F++              +A S +D     +L      FLL    A DKAVRFRCCQ++  + +   +  Q+D++  D   + +L RLRDK+  VR  AV AL   Q   +  DD   +    +++ L   + +D+SPDVR+A L+ +  +      ++ RT+DV ++VR+ A+  +GE V  K LS   R+ L++ GL+D++++V DAC   +   W R  E + +ELL  ++V
Sbjct:    8 SMKEIFNQCQNSMQGHGQLIKSLQKVFKQTEFAAFWSEFNLLMKYSMIVFTREPAIERTIDFITKFITSIEPEEAPHASADSTLDNVAGNNLLMEVFTFLLQVHSAKDKAVRFRCCQIINKMLSNLGENAQIDDDLYDKIYESMLERLRDKMPVVRFHAVMALARLQ---DPHDDNCPV----IKAYLF-LINADTSPDVRRAVLSCIAPSTKTLPAILSRTRDVNDTVRKMAYMVMGEKVHIKALSIAHRIQLLQDGLTDTADSVKDACAAKLLQAWLRMLEGNALELLTSLDV 294
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: UPI001E1DD553 (condensin complex subunit 3 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1DD553)

HSP 1 Score: 136 bits (343), Expect = 4.610e-32
Identity = 94/274 (34.31%), Postives = 144/274 (52.55%), Query Frame = 1 
Query:  193 DEYFSCLTRILVISKRDPGVERLVRFVSLAAGS----DM--------DASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNVVN-----VEVWACTHTHTPL 963
            +E+   L   +V+ KR+P VER++ F +  A S    +M        D  + +    FLL    A   AVRFR CQL+  L     +  Q+D++  D   + +L RL+DK+  VR+QAV AL   Q        +   +D  V +  +  + +DS+P+VR+A L+ +  +     Q+V RT+DVKE+VR+ A++ L E V  K +S  QRV L++ GL+D S AV  A +  +   WFR +E D + LL R++V N     V V     + TPL
Sbjct:   12 EEFIHYLKYAMVVYKREPAVERVIEFAAKFATSFHQSEMEDXXXXXDDGGILNDLFTFLLKSHEANSNAVRFRTCQLINKLLGSMPENAQIDDDLFDKINEAMLVRLKDKIPNVRIQAVLALSRLQ--------DPKNEDCPVVNAYITLIENDSNPEVRRAVLSCIAPSAKTLPQIVGRTRDVKEAVRKLAYQVLAEKVHMKAMSIAQRVMLLQHGLNDRSAAVKQATQKHLLQGWFRFSEGDILMLLHRLDVENSSDVAVSVLNAIFSTTPL 277
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: A0A1S2ZE08_ERIEU (condensin complex subunit 3 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S2ZE08_ERIEU)

HSP 1 Score: 136 bits (342), Expect = 6.320e-32
Identity = 90/255 (35.29%), Postives = 140/255 (54.90%), Query Frame = 1 
Query:  193 DEYFSCLTRILVISKRDPGVERLV----RFVSLAAGSDMD-------ASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNVVN 924
            +E+  CL   LV+ KR+P VER++    +FV+    SD+D         + +    FLL    A   AVRFR CQL+  +     +  Q+D+   D   + +L RL+DK+  VR+QAV AL   Q      D +D  ++  V +  +  + +DS+P+VR+A L+ +  +     Q+V RT+DVKESVR+ A++ L E V  + LS  QRV L+++GL+D S+ V  A    +   W R +E   +ELL R++V N
Sbjct:   46 EEFIHCLKYALVVYKREPAVERVIDFAAKFVTSFHQSDVDNDEEEEDGGILNYLFAFLLKSHEANSSAVRFRVCQLINKVLGTMPENAQIDDHLFDNINEAMLIRLKDKIPNVRIQAVLALSRLQ------DPKD--EECPVVNAYITLIENDSNPEVRRAVLSCIAPSAKTLPQIVGRTKDVKESVRKLAYQILAEKVHMRALSIAQRVMLLQQGLNDRSDVVKQAVHKPLLQGWLRFSEGSILELLHRLDVEN 292
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Match: A0A6P8IVS3_ACTTE (condensin complex subunit 3-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IVS3_ACTTE)

HSP 1 Score: 135 bits (339), Expect = 1.610e-31
Identity = 96/306 (31.37%), Postives = 149/306 (48.69%), Query Frame = 1 
Query:   85 CQAVRKLFVEAQRTVQCHQ---RCSDSLPRLLSKHESAWDEYFSCLTRILVISKRDPGVERLVRFVSLAA----------------GSDMDASLFDRT-------IEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDCFVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELMRAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGEDVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIELLQRMNVVN 924
            C+ VR++F E+QR  Q H    RC   +    S  E   + +   L   +++ KR+P VER+  FV+  +                  D D S  + T        +FLL    A DK VRFR CQL+  L         +D++  D  +  +L RL+DK+ A+R+QAV AL   Q   +  DD     D  V S  M+ M +DSS DVR+A L  +  T      ++ RT D+ E+VR+ A+R +GE V  + LS   RV L++ GL+D S  + + C   +   W +  + + + LL+ +++ N
Sbjct:    5 CKTVREVFEESQRGFQHHGKLIRCLKRIQNSFSSEEEFRECFLDHLRYAMIVFKREPAVERIAEFVAKYSTAKIYYEKAPEKGDNISDDEDDSDSEPTNPFLQFMFKFLLDCHDAKDKGVRFRSCQLINKLLNNMDDDASIDDDIADGILTSMLKRLKDKIPAIRIQAVYALSRLQ---DPRDD-----DCPVLSSYMQMMTTDSSADVRKAVLMNIALTRRSLTPVIGRTHDITEAVRKVAYRIIGEKVKIQSLSIALRVQLLQDGLNDRSSVIQEVCIKCILQGWLKSLDGNVVSLLKCLDIEN 302
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1242.1861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL8_ECTSI8.250e-19292.52Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L8W1_9PHAE6.180e-10685.71Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YU77_9STRA4.540e-3733.23Nuclear condensing complex subunit n=1 Tax=Tribone... [more]
A0A8J1T631_OWEFU3.150e-3331.60Ofus.G011148 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI00109B8D269.840e-3332.24condensin complex subunit 3 n=1 Tax=Exaiptasia dia... [more]
UPI00112ED6C81.320e-3232.53condensin complex subunit 3 isoform X1 n=2 Tax=Rhi... [more]
A0A210R2D6_MIZYE1.920e-3230.17Condensin complex subunit 3 n=1 Tax=Mizuhopecten y... [more]
UPI001E1DD5534.610e-3234.31condensin complex subunit 3 n=1 Tax=Echinops telfa... [more]
A0A1S2ZE08_ERIEU6.320e-3235.29condensin complex subunit 3 n=1 Tax=Erinaceus euro... [more]
A0A6P8IVS3_ACTTE1.610e-3131.37condensin complex subunit 3-like n=1 Tax=Actinia t... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1242contigE-fasciculatus_F_contig1242:884..7876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score573.9
Seed ortholog evalue4.6e-161
Seed eggNOG ortholog2880.D7FVL8
Preferred nameYCG1
KEGG koko:K06678
KEGG Pathwayko04111,map04111
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045786,GO:0045934,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071840,GO:0080090,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:2000241,GO:2000242
EggNOG free text desc.complex. Subunit
EggNOG OGsCOG5218@1,KOG2025@2759
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons7
Model size963
Cds size963
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927748.1913123-CDS-E-fasciculatus_F_contig1242:883..10931622927748.1913123-CDS-E-fasciculatus_F_contig1242:883..1093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 884..1093 -
1695995678.1470952-CDS-E-fasciculatus_F_contig1242:883..10931695995678.1470952-CDS-E-fasciculatus_F_contig1242:883..1093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 884..1093 -
1622927748.2018948-CDS-E-fasciculatus_F_contig1242:1380..14491622927748.2018948-CDS-E-fasciculatus_F_contig1242:1380..1449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 1381..1449 -
1695995678.1572914-CDS-E-fasciculatus_F_contig1242:1380..14491695995678.1572914-CDS-E-fasciculatus_F_contig1242:1380..1449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 1381..1449 -
1622927748.2168922-CDS-E-fasciculatus_F_contig1242:2344..25421622927748.2168922-CDS-E-fasciculatus_F_contig1242:2344..2542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 2345..2542 -
1695995678.1652865-CDS-E-fasciculatus_F_contig1242:2344..25421695995678.1652865-CDS-E-fasciculatus_F_contig1242:2344..2542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 2345..2542 -
1622927748.2294328-CDS-E-fasciculatus_F_contig1242:3347..35321622927748.2294328-CDS-E-fasciculatus_F_contig1242:3347..3532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 3348..3532 -
1695995678.1733367-CDS-E-fasciculatus_F_contig1242:3347..35321695995678.1733367-CDS-E-fasciculatus_F_contig1242:3347..3532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 3348..3532 -
1622927748.2431388-CDS-E-fasciculatus_F_contig1242:4237..43551622927748.2431388-CDS-E-fasciculatus_F_contig1242:4237..4355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 4238..4355 -
1695995678.1813762-CDS-E-fasciculatus_F_contig1242:4237..43551695995678.1813762-CDS-E-fasciculatus_F_contig1242:4237..4355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 4238..4355 -
1622927748.2560973-CDS-E-fasciculatus_F_contig1242:4745..48501622927748.2560973-CDS-E-fasciculatus_F_contig1242:4745..4850Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 4746..4850 -
1695995678.1895351-CDS-E-fasciculatus_F_contig1242:4745..48501695995678.1895351-CDS-E-fasciculatus_F_contig1242:4745..4850Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 4746..4850 -
1622927748.266469-CDS-E-fasciculatus_F_contig1242:7798..78761622927748.266469-CDS-E-fasciculatus_F_contig1242:7798..7876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 7799..7876 -
1695995678.197578-CDS-E-fasciculatus_F_contig1242:7798..78761695995678.197578-CDS-E-fasciculatus_F_contig1242:7798..7876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1242 7799..7876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1242.1861.1prot_E-fasciculatus_F_contig1242.1861.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1242 884..7876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1242.1861.1

>prot_E-fasciculatus_F_contig1242.1861.1 ID=prot_E-fasciculatus_F_contig1242.1861.1|Name=mRNA_E-fasciculatus_F_contig1242.1861.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=321bp
MPRVKRESSASAADARKEQKMAPEAQTCCQAVRKLFVEAQRTVQCHQRCS
DSLPRLLSKHESAWDEYFSCLTRILVISKRDPGVERLVRFVSLAAGSDMD
ASLFDRTIEFLLLHSGAADKAVRFRCCQLLGTLTTEYTQRPQVDEEDLDC
FVDVLLPRLRDKVAAVRVQAVGALRPFQFGLEAGDDEDALKDDKVRSELM
RAMVSDSSPDVRQAALAAVTKTVGMFDQLVLRTQDVKESVRRAAFRTLGE
DVSSKHLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPIEL
LQRMNVVNVEVWACTHTHTPL
back to top

mRNA from alignment at E-fasciculatus_F_contig1242:884..7876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1242.1861.1 ID=mRNA_E-fasciculatus_F_contig1242.1861.1|Name=mRNA_E-fasciculatus_F_contig1242.1861.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6993bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1242:884..7876- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTCGAGTCAAGAGGGAGTCATCGGCTTCTGCCGCCGACGCGAGGAA
GGAGCAGAAGATGGCACCAGAAGCGCAGGTGAAGAGGCACTTTGCTGCTA
CAGTACACAGCAGTCGCTCCAAATACATCATGTAGAGTCGTTCCCTTCGT
CGTCCGTGCCTGTGTGTACTACGTACTCTGTAGCTCTGCCGCCAACATCT
ATCGTCGGCGATGTCTCTACTCTGTTGCACCTCGCTCACAGGGACAGCAA
GAGTTCTGTAGATGCAGGACAAGCTGAACCTTTCACCCACGTTTCCAATG
TTTTGGGCAGCAAGCAGGGTGCTATTAGGTGCCCCAGCCCGTTACATATG
CATACGGCAGTAGTTTCACCGCATCAACATCGAATGACAGCCGGCGCCGC
TTGTGTTGTATCTATCCCCCCTCGAGCATTTGCAGGTCTACAGCCGTACA
TACATAACAGTGTCTGCCTCCGTATCGTAGGTATACGGTAGGGTATGTAC
TGCTGTACAGAGTAATGGAGGCTGATAGGTACCCCATTTCCAGCACTCCG
GAACGTCAGTTTCAATTACAGAACATTGCTGTGCTTTTACTAATAGTTTT
TTTATGCAAGAAGAGTGGCCCGGATATGTAGGGGCGCTTTTTGTTTTGCA
AATACTGCTGTAGTGTAGCTGTTTAGAGCGATCACATACATTAGATGTAT
GTACACACGAAATGTAAGAATAATTCTCATGCTGGGGGGGGTGAAGACAC
ACGATAGACGTCCGTCCGTCCGTCTGACCAGCCATAAATAAGCCAGCAGA
CTCGAGCCCATTTCCCACCATCTAGACTAGGTACCAAATCGCAATCCAAG
ACTTGTGCACAACAGGTAACATTTTGCCCGAGCTGTCCCAACTGCTTTCA
GCTCCAGCCGTGCTCAGTACATCGAATTACGAAGGCATCTTCTGCGCCGA
ACCTCACGGGAAGCGAGCGTCCCTGCCCAAAACCGGCAGGCGTGATTTTT
TTGGTTCTCTACTCTCTACTGCTGTGCTCAGCAGCAGCTGCTGCTGCTGG
CAACACACGCGCTACACAGAGACAGGGAACATGGACAAGGGGGGCGGTAC
ATACACACACACATACATGCTGTTAGCGATTGGCAGAGGAAGCGAGAGGA
GAGATATTGGTTGGATCTCTGTAGGTCCATCGGTTGTTGTTTGGTTGTGC
TCACCGGCGGGAGCGGCCTTCTCTGGAGGCAGGCAGGCGGGGGAGGGAGG
CACACACATCACACCACCAGCAACACATCACGCGCTCGTTCCTAGACGAT
GCAGTACTACCTACTGCCGTGCTGTGCACCTCTCTATACCTATTCTGTGC
GAGAGGGTGTGTCGCCTCTGCTGCTGCTGTTGCTGTAGCTAATAGCGGTG
GAGGGAAACTACATCAGATCAGCATCGGCGCCAACACCAGCCGTGGGCAT
AATTTTTTCGTTTTTTCCAGCAACGTTTGTTTCTTCTCTACCTGATGACG
CTGGATAGCATGCCCCCCTCTCTAGCTGATGATGATGGATACCACCCTCC
CTCTCCAGCTGATGATGATGGGCCGCCCCCTCTTATTTGTGAAGCACACT
GTTCGGTAAACGAGCCAATGAACAGACGCACGAGCCTACTGCAGGCACTG
TTTTTCAACCCCAAAAACTATGTTCCACCTCTCTAGCAGGGAGATACACT
CAAACATGTGACCCTTTGCGCAATCTACATACGATGTACTGTCGGCATGC
GACCAACAATCTCTATTGGTAGGTATTATGCGAGTCTATTTCGGCCAGCA
TCGTCCATCGATAGACAGTCTGGCAATACGTTGCGGTCAGCAATTATCTT
GACAATATCGTAACTTCTTTCGCAATTCACTATCAATACACGTTCATGAA
TCCTTCTCTTGTGACAATGGATGTCGATTGAACCTTTGCAAGTCTATTGA
TACTTAAATACTGTACCTTGGCATATCCGTTGCGGTTGAAAATACATGTT
GACAGCACCTTTAAAAATCTGTCGTTATTGACAATGGATGGCGAAAGGAA
ATTCAAAATGTATTGTTTTTGACAATGAATATCGCGAGAAACCGTTTAAA
ACCTGCTGTCCCTGACAAGGAATGTCAAGTTGTTTTTTCTGGTCCGTTGT
AGCAACACCACTGTTTCAAAGGATACCTCATGCACAGCAAGAATAAGCAC
TGTATGTTGCGTAGCACTGCGTTCGGACTACCGCCGTGCAACAGCATCAG
TCTAGGCTGTCCCAAGCACAATGGAAGCTGCAATACAGGTATCGCACCCA
AGGTTCTCTTAACTTCCATCATAAAACGCCCGCCTTGGCCGAACAAGCAT
CCTTTGAACATGCATGCTTCTAGTGCATGTCGACAGAGTCATGAGCTGCT
GTGGTTTTCTTGAAAACCTATTTTTTTGCTTCAAAGGAGCATTTCTTGTT
TCTTTTAGACGGGTGCGACACTTCATGCTTGTGCGTCACACACACCGCGT
GATGACATCCATAGAAGCCATAAGCATGATAGCGCCAGCTCCTTCAACGT
TTGTTTTATTCGAGTTGATCAAGTTCCCAGGATAGTTGATGACAGGGAGA
CGCCCTTTTCCCTCCATCCATGGTACCTCCGGCCATCGTCTCTCGATTCC
CGTCGTAGGTTGTCAAGCAAATAGATACACTTTGGTTTTCTAGCAATCCA
GCGTTTTGCGCATGTCTCGCGTACGATAAGGGCGACAATTGTACAAAATA
TTTGTACAAAGTTCGTGTTTCAAACAGGGTTGAAAGAGACGATCGCTTTG
TGCACGATAAGGGTAGAGGAATGGAACGAAGCGCCTTTCACGAGGATATA
AATTGTTCATCTACTTGAATTATGAAATAGAGAGAGGGGTTCGATTGAGT
CCGTGAAATCTGCTGGCGATTGCGTCAGGCGAATTTGCGAATCGAATCTA
TACTTACGACATGTCATGCGAGTTCTGAAGTACGACGGCGCCGGAACTGC
GACCCCATCACCGTCGTCCGTCCCAGACGTGTTGCCAGGCTGTTCGCAAG
CTCTTCGTTGAGGCCCAAAGGACGGTCCAGTGCCACCAGCGTTGCAGCGA
CTCGCTTCCGCGGCTGCTCTCTAAGCATGAGGTGCGTATCTCGCTCGCTC
GCAGTTTTTGCCTCCATGAAGTGGAGGTTTGCCCGAAGGACACAAAGGTA
TACGCCGGTTAACGTCAGGGTTGGACAGCAAGGGCGGGGTTCCGTGGATC
TGTCGGGACAGAAAACCCTACCGCTTGAGCTCTGTTTCCGTGGGTTTTCT
TGACTAGATTGTTCTTTGCTTCGCCGCCGCCTAGTACAGCGATGTACCCA
CACAGCCAGTCGAGAAAAACGCAGAGTGCGGAGCAGGCAGGGAGAGTCCG
TTTTCCGTCAGCGATCAGCTGTCGCCCAGAGGTTTGCACGGAAGTTAGGA
AACCCCAGGCTCACCACCGCCCCGCGTGTTGTTACTGCCCGCTTCCACCC
TCGACGAACGACGGTCTGCAGTCGGCTTGGGATGAGTACTTCTCGTGCTT
GACCCGCATCCTGGTGATCTCGAAGCGCGACCCTGGCGTGGAGCGTCTGG
TGCGCTTCGTTTCCTTGGCCGCGGGCTCCGATATGGACGGTAAGATATCG
GTCGGTGGAGACACATGTACATGTAGCGATTCCAGCTTTCACCAGTGTGC
GATACCCCCCCCCGGGCCCATAGCCTCGTGGTGTCAGCTCACAACGACCA
GTGCTGGCTTGGATCTCTCTTTGCCGGCGGCATAGGTTTACAGGCTGCCG
CCGCCGCGGCGTGGTGCGGTCAAGAAGTTCCAAGGGTTCTCGTCGTACTG
TAGGCGGGGATCGAGGTTGTATTTATCACTCATGCACTTACTTAACGGAC
ATCGGTCTGGCTGCACCCCAGCTGTATGCTGTCGGCTGCTGCCCAGGGTC
CATGGTATCGTGCTCTAGAAATCCTTGCAAATGTATATGGATGTTGTGTA
TCGCTGTACATGGGCAAGGTCCTCAGAAGGCATGGATGAGTGCTCGACAG
AAGGAGGGCGAGAGTAGCCCATCACTCCGTCACCGCAGTGCGGCTTGGTC
GTCGTCCTGCTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTC
TGTCTCAGTGAACGGTCTTGCATCCCTCTGAACCGCGGACGATCTTTTGC
CTTGACCGGTTTCGTTCGTGCAACACCTACCTGCCTACCCCCCTTTGGCC
CGCGGTCAACCCCCACCGCTACACCTTTGCTCCTTTCTTAAACATTGCGT
CTTGATCGTGGTCGTGCACGAACGCCCCCTGTGCTGGCGTCCAGCAAGCC
TCTTCGACCGTACGATCGAGTTCCTGCTGCTGCACTCCGGCGCGGCGGAC
AAGGCTGTTCGCTTCCGTTGCTGCCAGCTCCTGGGCACTCTCACGACGGA
GTACACGCAACGTCCCCAGGTGGACGAGGAGGACCTGGACTGCTTCGTGG
ACGTCCTGCTGCCCCGCCTTAGGGACAAGGTCCGTTCTCTTGGTGTAGAT
ACAGATTGTAGGTGGCGTTTTTACTTTCTTGTGACCCAAGTCTAGATGTG
TGCGTCTTGCGCGTGGCATCGATTGACTACAGAACGCTTGCCGGTTGACG
TTCGACGTCCAGATGTTTCTTGTAACTTTGCTTGTTTGTGAGGCGGCGTG
GGGCGTTGTTTCCTCAGGACGAGGTGAAGTTTCCAGGTCCGTGGCCACCC
CACCACCCCCCGGCGCCTTGTGCCAAAGGCGGAGCTGAGTAAGGGATTTT
TTTGTTGTTGTTGTGCGTAACGAACTGAAAGATCGCTGTCACTAGGGCTG
CATGGGTTGATGATGAGAGCAACACGAAACGAAAGGAAACGTGTAGTGTA
TGACAACGAAATGCCCCACTGAGGCCGCCCGGGTGGTCGTCAAGTACTCC
CGCGAGCACAACAACGAACATACTCATTTTTGCGGTGAACGTTACGTCCA
GGCTCGGCGATGATGCCCGCACCACCCTCACAAAGCGCTGCTGGACTGTC
TATGTCTGTAACGCCACCCCCCTTACCCCTGTCCCATTCCTACCGAGAAG
CGGAACGATATATAGCAACCCCTGTGGAAAGTAGGCAGACACGTGTCAAG
CGCGCTATAGCTGTTGGCAACGGCGATCTTGTTTGTTTTTGCACGGCAAC
GGGAACGATTCTCAATTAGTCTGGAAGGGGTGCTTTGTTGATGATCAACT
GAGCTCCTAAGGCAAAGCACCAAGGAGTAAAGGCTCCGCCTACTAACCCC
TTCCCACCTGTGCTGCTTGTGTTGGATGATACAGGTCGCAGCGGTCCGGG
TGCAGGCGGTCGGCGCCCTCCGGCCGTTTCAGTTCGGGCTTGAGGCCGGC
GACGACGAGGATGCCCTGAAGGACGACAAGGTACGGTCGGAGCTGATGAG
AGCCATGGTGAGCGACAGCAGCCCGGACGTGCGGCAGGCGGCGCTGGCCG
CGGTGACCAAAACAGTCGGCATGTTCGATCAGGTACGTAGGGGGTGTTGA
TCGGTACACCCGTTGGTCTCCTTCCACATTTAGGACTGCTGATCAGGTCC
TACGTTGTGCGGAGTACATGCAACAGCACGGCCGTATGCTGGGTGGGTGC
TCGTGAGCAAGGGTCTTTTTTGTTTCGCGCGGACACCAGCTTTGCTCCCA
AGAAGCGACCTCTCGTGTCACAGCAGCAGCGTTGTTGTTTAGCCATGTTC
ATGTTTGTCAACTGCTGTTACCCCAAGAAGCATCGGCACGTGCTGGACAG
TGTAAACCAAGTGTGTGTTTTCCCGGCTCGCAAGAGTAATATGTTAGTCG
CGCTTAAAAACAGTGTAGTTTTCGGTCACGATGGGATGAACATGTTCGCT
TCAAATTGTATTTTGGGGTCACGGATCTGCATCTTGGACCAGTGGCCCAC
ACGTAGGGGAAGTGGACACGTTTTTTTTTTTTTTTTTTACAATTCTCCTC
CTGGTGGTTTCGATTGTCCTCTTCCGCGTTGATTGCTGGTCTGTCCGTGG
TTAGTTAGGTCCGTTTTTATGTCGAGGTCTTCATTGATGGTTTCGGTTGT
GAGCAGGTGCTTGTCTCGTGCGACCTTTACCCGTGTGCTCTGGGAGTGGG
TGTTGGTGTGTGTGTGTGCTTCACTTTTGTGACATAAAGTGCCATTCGGC
TGCACCACCAGTGCGAATTGCCAGCAAGGACGACAGCAGTCGTTCGTTGT
AAGAACGCGTCATGCCCTAGGCTCCGGATGTCTACGACCTCCTGATGAAA
CACGGGTATTGGGTCGGAGGTACTTACGACATTCGATGTGTACATATGTA
TCTCATGGCCTGTTTATCTATCCCCGTTGTGGCCCCCTCCTCCTCATTGC
ACCACCCATCGCGTGCCCTACACGCAGTTGGTGCTCCGGACGCAGGACGT
CAAGGAGAGTGTCCGCAGGGCAGCGTTCCGGACCCTGGGAGAGGATGTGA
GAAAAAACGCGTGCCGTCGAAGAAGTAGTCGCAGGGATAGGGAGGTGCCT
GCTGGATGTTTGAAGGCGTGTCAGGGCTCGCGGTGATAAAGAAGTGGGCA
TGTTGGCCCTATCTCTTCCCCCTCAATGTGTGCCGACCTCTCCACCTGTG
TTCTCATTGCCAACCGTCCTAGGGTGCCCTTGACCCCCATTGACTCCCAT
GACTCATCTATCCACCCACTCACTCATCCACTATTCCGTGGCAACGACGG
GCACCGCTGCCCCCCCCCCCCCCCCATGCGAAGGTGTCTTCCAAGCACCT
GAGCCCGCAGCAGAGGGTAACGCTCGTGAAGAGGGGTCTCTCGGACAGTT
CGGAGGCGGTCGTGGATGCTTGCCGTTTCATGGTGTGCGTCCACTGGTTC
CGCGACGCAGAGTACGACCCCATCGAGCTGCTGCAGCGCATGAACGTCGT
CAACGTGGAGGTGTGGGCCTGCACACACACACACACACCCCTC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1242:884..7876-

>mRNA_E-fasciculatus_F_contig1242.1861.1 ID=mRNA_E-fasciculatus_F_contig1242.1861.1|Name=mRNA_E-fasciculatus_F_contig1242.1861.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1926bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1242:884..7876- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTCGAGTCAAGAGGGAGTCATCGGCTTCTGCCGCCGACGCGAGGAA
GGAGCAGAAGATGGCACCAGAAGCGCAGATGCCTCGAGTCAAGAGGGAGT
CATCGGCTTCTGCCGCCGACGCGAGGAAGGAGCAGAAGATGGCACCAGAA
GCGCAGACGTGTTGCCAGGCTGTTCGCAAGCTCTTCGTTGAGGCCCAAAG
GACGGTCCAGTGCCACCAGCGTTGCAGCGACTCGCTTCCGCGGCTGCTCT
CTAAGCATGAGACGTGTTGCCAGGCTGTTCGCAAGCTCTTCGTTGAGGCC
CAAAGGACGGTCCAGTGCCACCAGCGTTGCAGCGACTCGCTTCCGCGGCT
GCTCTCTAAGCATGAGTCGGCTTGGGATGAGTACTTCTCGTGCTTGACCC
GCATCCTGGTGATCTCGAAGCGCGACCCTGGCGTGGAGCGTCTGGTGCGC
TTCGTTTCCTTGGCCGCGGGCTCCGATATGGACGTCGGCTTGGGATGAGT
ACTTCTCGTGCTTGACCCGCATCCTGGTGATCTCGAAGCGCGACCCTGGC
GTGGAGCGTCTGGTGCGCTTCGTTTCCTTGGCCGCGGGCTCCGATATGGA
CGCAAGCCTCTTCGACCGTACGATCGAGTTCCTGCTGCTGCACTCCGGCG
CGGCGGACAAGGCTGTTCGCTTCCGTTGCTGCCAGCTCCTGGGCACTCTC
ACGACGGAGTACACGCAACGTCCCCAGGTGGACGAGGAGGACCTGGACTG
CTTCGTGGACGTCCTGCTGCCCCGCCTTAGGGACAAGCAAGCCTCTTCGA
CCGTACGATCGAGTTCCTGCTGCTGCACTCCGGCGCGGCGGACAAGGCTG
TTCGCTTCCGTTGCTGCCAGCTCCTGGGCACTCTCACGACGGAGTACACG
CAACGTCCCCAGGTGGACGAGGAGGACCTGGACTGCTTCGTGGACGTCCT
GCTGCCCCGCCTTAGGGACAAGGTCGCAGCGGTCCGGGTGCAGGCGGTCG
GCGCCCTCCGGCCGTTTCAGTTCGGGCTTGAGGCCGGCGACGACGAGGAT
GCCCTGAAGGACGACAAGGTACGGTCGGAGCTGATGAGAGCCATGGTGAG
CGACAGCAGCCCGGACGTGCGGCAGGCGGCGCTGGCCGCGGTGACCAAAA
CAGTCGGCATGTTCGATCAGGTCGCAGCGGTCCGGGTGCAGGCGGTCGGC
GCCCTCCGGCCGTTTCAGTTCGGGCTTGAGGCCGGCGACGACGAGGATGC
CCTGAAGGACGACAAGGTACGGTCGGAGCTGATGAGAGCCATGGTGAGCG
ACAGCAGCCCGGACGTGCGGCAGGCGGCGCTGGCCGCGGTGACCAAAACA
GTCGGCATGTTCGATCAGTTGGTGCTCCGGACGCAGGACGTCAAGGAGAG
TGTCCGCAGGGCAGCGTTCCGGACCCTGGGAGAGGATTTGGTGCTCCGGA
CGCAGGACGTCAAGGAGAGTGTCCGCAGGGCAGCGTTCCGGACCCTGGGA
GAGGATGTGTCTTCCAAGCACCTGAGCCCGCAGCAGAGGGTAACGCTCGT
GAAGAGGGGTCTCTCGGACAGTTCGGAGGCGGTCGTGGATGCTTGCCGTT
TCATGGTGTGCGTCCACTGGTTCCGCGACGCAGAGTACGACCCCATCGAG
CTGCTGCAGCGCATGAACGTCGTCAACGTGGAGGTGTGGGCCTGCACACA
CACACACACACCCCTCGTGTCTTCCAAGCACCTGAGCCCGCAGCAGAGGG
TAACGCTCGTGAAGAGGGGTCTCTCGGACAGTTCGGAGGCGGTCGTGGAT
GCTTGCCGTTTCATGGTGTGCGTCCACTGGTTCCGCGACGCAGAGTACGA
CCCCATCGAGCTGCTGCAGCGCATGAACGTCGTCAACGTGGAGGTGTGGG
CCTGCACACACACACACACACCCCTC
back to top