mRNA_E-fasciculatus_F_contig12419.1860.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12419.1860.1
Unique NamemRNA_E-fasciculatus_F_contig12419.1860.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12419.1860.1 vs. uniprot
Match: A0A6H5L360_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L360_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.050e-73
Identity = 138/207 (66.67%), Postives = 149/207 (71.98%), Query Frame = 3 
Query:    9 MNENPATTTAQAKDNXXXXXXXXXXXXXXXXXXXXXXXXXXWSSSRAAPCSGQGQLAAQPAHSSVSSKSPALHVLNT-AQAMAAGTKEGSGPYPLRPRPTHGAVVKQALNVFKSSTTQP----------GGPGVPVLSASSSSSAHTSVPPAKEPLAPVRCKHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN 596
            M+EN AT+TAQ  DN                           SSSR  P SGQ QL AQ A+SSVSS+SPALH LNT  QA AAGTKEGSGPYPLRPRPTHGAVVKQAL++FKSS +QP          GGPGV VLS S SS AHT+VPPAKEP  P+ C+HRGCSNLARYGPLDSPPRACQLHKRVGQFTT+RHGALFRATREGN
Sbjct:    1 MDENKATSTAQPTDNNTLPVYNNRTNDVPSTRSSSSSPTSSCSSSRVTPYSGQDQLDAQLANSSVSSESPALHDLNTPGQAAAAGTKEGSGPYPLRPRPTHGAVVKQALSIFKSSASQPSXXXXXXXXXGGPGVRVLSTSPSSPAHTAVPPAKEPPIPMHCQHRGCSNLARYGPLDSPPRACQLHKRVGQFTTNRHGALFRATREGN 207
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BLAST of mRNA_E-fasciculatus_F_contig12419.1860.1 vs. uniprot
Match: A0A6H5LLY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLY6_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 9.170e-71
Identity = 131/197 (66.50%), Postives = 141/197 (71.57%), Query Frame = 3 
Query:    9 MNENPATTTAQAKDNXXXXXXXXXXXXXXXXXXXXXXXXXXWSSSRAAPCSGQGQLAAQPAHSSVSSKSPALHVLNT-AQAMAAGTKEGSGPYPLRPRPTHGAVVKQALNVFKSSTTQPGGPGVPVLSASSSSSAHTSVPPAKEPLAPVRCKHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN 596
            M++N AT+TAQA D                            S SRAAP SGQ Q  AQPA+SSVSS  PALH +N   QA A G KEG GPYPLRPRPTHGAVVKQAL+V KSS + PG  G+PVLSAS SSSAHTSVPPAKE   PVRC+HRGCSNLARYGPLDSPP  CQLHKRVGQFTT+RHGALFRATREGN
Sbjct:    1 MDDNVATSTAQATDKKKLPVYNHRTNDDPSTRSASLSSASSCSCSRAAPYSGQDQFDAQPANSSVSSNGPALHAINAPGQAAATGAKEGPGPYPLRPRPTHGAVVKQALSVLKSSASHPGRAGMPVLSASPSSSAHTSVPPAKELPIPVRCQHRGCSNLARYGPLDSPPCTCQLHKRVGQFTTNRHGALFRATREGN 197
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BLAST of mRNA_E-fasciculatus_F_contig12419.1860.1 vs. uniprot
Match: D7G0U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U7_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.930e-24
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 3 
Query:  450 VRCKHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN 596
            +RC+HRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN
Sbjct:    1 MRCQHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN 49
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BLAST of mRNA_E-fasciculatus_F_contig12419.1860.1 vs. uniprot
Match: A0A6H5KYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.970e-11
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 3 
Query:  369 PGVPVLSASSSSSAHTSVPPAKEPLAPVRCKHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN 596
            PGV   S+ S     TS P   +     RC++ GC   A+YG  D+PP  CQ HKR GQ+TT+RHG L  ATR+G+
Sbjct:   32 PGVSPASSMSPPPTSTSSPKTLQAPTAPRCEYPGCPKSAKYGLRDAPPSKCQAHKRAGQYTTNRHGELLMATRDGD 107
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BLAST of mRNA_E-fasciculatus_F_contig12419.1860.1 vs. uniprot
Match: D8LGW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW8_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.650e-10
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:  369 PGVPVLSASSSSSAHTSVPPAKEPLAPV--RCKHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN 596
            PGV   S+ S     TS P  K  LAP   RC++ GC   A+YG  D+PP  CQ HKR GQ+TT+RHG L  ATR+G+
Sbjct:   32 PGVSPTSSLSPPPTSTSSP--KTLLAPKAPRCEYPGCPKYAKYGLRDAPPSKCQAHKRAGQYTTNRHGELLMATRDGD 107
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BLAST of mRNA_E-fasciculatus_F_contig12419.1860.1 vs. uniprot
Match: A0A6H5KLI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.850e-9
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:  438 PLAPVRCKHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN 596
            P AP RC++ GC   A+YG  ++PP  CQ HKR GQ+TT+RHG L  ATR+G+
Sbjct:  110 PKAP-RCEYPGCPKSAKYGLREAPPSKCQAHKRAGQYTTNRHGELLMATRDGD 161
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12419.1860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L360_9PHAE1.050e-7366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLY6_9PHAE9.170e-7166.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0U7_ECTSI1.930e-2495.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYF0_9PHAE8.970e-1146.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGW8_ECTSI1.650e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLI4_9PHAE2.850e-954.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12419contigE-fasciculatus_F_contig12419:301..2312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-23_002240.1
Exons3
Model size596
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12419.1860.1prot_E-fasciculatus_F_contig12419.1860.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12419 309..2312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927748.0811024-UTR-E-fasciculatus_F_contig12419:300..3081622927748.0811024-UTR-E-fasciculatus_F_contig12419:300..308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12419 301..308 +
1695995678.114021-UTR-E-fasciculatus_F_contig12419:300..3081695995678.114021-UTR-E-fasciculatus_F_contig12419:300..308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12419 301..308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927748.1115077-CDS-E-fasciculatus_F_contig12419:308..5701622927748.1115077-CDS-E-fasciculatus_F_contig12419:308..570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12419 309..570 +
1695995678.122137-CDS-E-fasciculatus_F_contig12419:308..5701695995678.122137-CDS-E-fasciculatus_F_contig12419:308..570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12419 309..570 +
1622927748.125487-CDS-E-fasciculatus_F_contig12419:1482..16731622927748.125487-CDS-E-fasciculatus_F_contig12419:1482..1673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12419 1483..1673 +
1695995678.1301594-CDS-E-fasciculatus_F_contig12419:1482..16731695995678.1301594-CDS-E-fasciculatus_F_contig12419:1482..1673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12419 1483..1673 +
1622927748.138873-CDS-E-fasciculatus_F_contig12419:2177..23121622927748.138873-CDS-E-fasciculatus_F_contig12419:2177..2312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12419 2178..2312 +
1695995678.1381803-CDS-E-fasciculatus_F_contig12419:2177..23121695995678.1381803-CDS-E-fasciculatus_F_contig12419:2177..2312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12419 2178..2312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12419.1860.1

>prot_E-fasciculatus_F_contig12419.1860.1 ID=prot_E-fasciculatus_F_contig12419.1860.1|Name=mRNA_E-fasciculatus_F_contig12419.1860.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp
MNENPATTTAQAKDNTTPPVYHHRTNDAPSTRSSSSSSTSSWSSSRAAPC
SGQGQLAAQPAHSSVSSKSPALHVLNTAQAMAAGTKEGSGPYPLRPRPTH
GAVVKQALNVFKSSTTQPGGPGVPVLSASSSSSAHTSVPPAKEPLAPVRC
KHRGCSNLARYGPLDSPPRACQLHKRVGQFTTDRHGALFRATREGN
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mRNA from alignment at E-fasciculatus_F_contig12419:301..2312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12419.1860.1 ID=mRNA_E-fasciculatus_F_contig12419.1860.1|Name=mRNA_E-fasciculatus_F_contig12419.1860.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2012bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12419:301..2312+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTAAAATGAACGAGAACCCAGCCACCACCACGGCTCAAGCAAAGGAC
AACACAACGCCCCCTGTCTACCACCACCGCACGAATGATGCTCCTTCGAC
ACGATCTTCATCGTCATCGTCAACATCGTCATGGTCCTCGTCGCGTGCGG
CCCCATGCTCTGGTCAAGGCCAGCTTGCCGCACAGCCTGCACACTCATCG
GTATCAAGCAAAAGCCCAGCTTTGCATGTTTTAAATACGGCCCAGGCAAT
GGCAGCGGGCACGAAGGAAGGTTTGTTCGATCATTTGCTGATATTTAAAC
TTGCGCGGACGTGTCACTCTGAGCCGTAAATTAGAAACATGTGCGGGGGT
GTATATTTTCTGCCGTTTGATCGGGTAATTGGTTTGTTCCAATGTTTTCT
TCTTGTTAACTGCATATCCTTCCACGTTTGATCCGCGAGGGTTTGGTTAA
TTTGTGCATCGCGGACGGTTGCTGAAGGGCTACAAAAGAAGCGACACATT
TGGATATAATGTTGTCGTCTCAATTATGGCTTGATTGGATACAAATAAAG
ACGCCGAAGCGGATGGTCTGGCTATTTTCGATCCTTGTGTTGTGAGGACT
AGCCCCAACTTGTTTTATCCTGAGAATGTGTGTAGAAACCCCGACTTCTG
GGTAGTTGTGAGTATGATATAGCCGTCGCAATCCATCTGGTTGTCTTTCT
TCGTGTGCCAATGCACGTTGTTGGGTAACGTATGCAGACCTTGCGGCACT
CGAGGGGCTGACTGCCGACTCTTGTTGGTAGACCCATGCTAGTGAACACA
TTGCTACAAACCATAGACGAGGGCTTGTTTTGGGGCATTTCGCCGGGCAC
GACACTGAGCGCTTTCAACTTTTTCTTACGCCCGCTCGCTTTTGAAGCTT
TCGTCGAGCCAAATGTCGAGAGCCCAGCAATCGTGTGCCCTGCTCCCAGC
ATCCCATCGTGTGAGTGATCCTCTTGATTCTGATTTGATGAAGGAGAGAC
GGAAGAAGTGGTGCATGATGGCGAATGCAAGTCAAACATACGTATATGCT
GACCGGCTTCACTCAGGAACCGACATGTCCGGGGTGGTGCTGAAGCAGTT
CCGAATAGGACGCCCACAGTGGTTTCCGTCCCTTTTCCTCTCCTGATCCG
CCTCCTTTTCTTGGGCTCTGTGTTCCGGGCAGGTTCCGGCCCTTACCCCT
TGAGGCCAAGGCCCACCCACGGCGCGGTGGTGAAACAAGCACTCAACGTG
TTTAAGTCTTCCACAACACAGCCCGGCGGCCCCGGTGTACCCGTCCTGTC
GGCATCCTCGTCATCTTCAGCCCACACCTCAGTCCCTCCCGCGAAGGAGC
CACTCGCTCCAGTGCGCTGTAAGGTGCAAACGAACAGGGACTCTTCAGAG
ATTCGCGGTCCTTTTACTTTCAACTTCGACATGGCTATGTAGTCTGCTTT
GAAAATTGTACCCTTGTTACCCAGTCGATTTTGAATGTGCCGATCTGAAG
GGTAGAACACACCTTGTCGATCCCGCCCTGGCAAGGGGACCCGGATCCGG
AAGAGTCGCGCTTTCGCAGGTATTCCAGGTAGGTGATGATATTGAAATTT
ACCGGCTGGACAATAGGTGAGGTTAGAGACTCATCGACATTCAAGTTTTC
CGCTGGGCGATAGGTGAGGTTAGAGCCTGCCCGTTGACTCGCCGACGGTG
AGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTGTCTGGAGCGGTTTTCCGTGTCACGCGGCACATCAAGGGCATAG
GCAATTGTGTATTGATTCCACGCCGAGAGTTTGACGGCACGAATAAGGCC
CACTTTGCTCCCCTATCGAATATACAGCATCGGGGGTGCTCAAATCTGGC
GAGGTATGGCCCTCTGGACTCTCCACCTCGAGCCTGTCAGTTGCATAAGA
GGGTGGGCCAGTTCACCACCGACCGCCACGGAGCACTCTTCAGAGCCACC
CGTGAAGGAAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12419:301..2312+

>mRNA_E-fasciculatus_F_contig12419.1860.1 ID=mRNA_E-fasciculatus_F_contig12419.1860.1|Name=mRNA_E-fasciculatus_F_contig12419.1860.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12419:301..2312+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACGAGAACCCAGCCACCACCACGGCTCAAGCAAAGGACAACACAAC
GCCCCCTGTCTACCACCACCGCACGAATGATGCTCCTTCGACACGATCTT
CATCGTCATCGTCAACATCGTCATGGTCCTCGTCGCGTGCGGCCCCATGC
TCTGGTCAAGGCCAGCTTGCCGCACAGCCTGCACACTCATCGGTATCAAG
CAAAAGCCCAGCTTTGCATGTTTTAAATACGGCCCAGGCAATGGCAGCGG
GCACGAAGGAAGATGAACGAGAACCCAGCCACCACCACGGCTCAAGCAAA
GGACAACACAACGCCCCCTGTCTACCACCACCGCACGAATGATGCTCCTT
CGACACGATCTTCATCGTCATCGTCAACATCGTCATGGTCCTCGTCGCGT
GCGGCCCCATGCTCTGGTCAAGGCCAGCTTGCCGCACAGCCTGCACACTC
ATCGGTATCAAGCAAAAGCCCAGCTTTGCATGTTTTAAATACGGCCCAGG
CAATGGCAGCGGGCACGAAGGAAGGTTCCGGCCCTTACCCCTTGAGGCCA
AGGCCCACCCACGGCGCGGTGGTGAAACAAGCACTCAACGTGTTTAAGTC
TTCCACAACACAGCCCGGCGGCCCCGGTGTACCCGTCCTGTCGGCATCCT
CGTCATCTTCAGCCCACACCTCAGTCCCTCCCGCGAAGGAGCCACTCGCT
CCAGTGCGCTGTAAGGTTCCGGCCCTTACCCCTTGAGGCCAAGGCCCACC
CACGGCGCGGTGGTGAAACAAGCACTCAACGTGTTTAAGTCTTCCACAAC
ACAGCCCGGCGGCCCCGGTGTACCCGTCCTGTCGGCATCCTCGTCATCTT
CAGCCCACACCTCAGTCCCTCCCGCGAAGGAGCCACTCGCTCCAGTGCGC
TGTAAGCATCGGGGGTGCTCAAATCTGGCGAGGTATGGCCCTCTGGACTC
TCCACCTCGAGCCTGTCAGTTGCATAAGAGGGTGGGCCAGTTCACCACCG
ACCGCCACGGAGCACTCTTCAGAGCCACCCGTGAAGGAAACCATCGGGGG
TGCTCAAATCTGGCGAGGTATGGCCCTCTGGACTCTCCACCTCGAGCCTG
TCAGTTGCATAAGAGGGTGGGCCAGTTCACCACCGACCGCCACGGAGCAC
TCTTCAGAGCCACCCGTGAAGGAAAC
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