mRNA_E-fasciculatus_F_contig12409.1854.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: D7G862_ECTSI (Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G862_ECTSI) HSP 1 Score: 608 bits (1568), Expect = 1.760e-211 Identity = 330/373 (88.47%), Postives = 343/373 (91.96%), Query Frame = 2
Query: 320 QMGTEKLNSEAAALTAQRLGEALALERDHERAVSVFGRAVVASEALYGDKSTQTVACLTGLGLALFMQGQLSDAASTLGRALSVRALKPDEGMGTSTQDVTKTLDGLAKSLVHRLPEEGEGELGGALLAVDHINRLAWRYFLQKLPYQGESVMKEVLQSLLVEKEDAGL-DPSPPRDLVISALLYNLGFLRLAVLGQFGPAASVLQQAIELRKAVLGEAHSLTVQAVVSRGWALTLTGDTLLAVEELTSSADALLSAGQPHAADRLLRQALQQGYDPLGGATYAHACYTQHSNMLRGWGSEGIAKADAFCLNQLNIASKARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLKFNPGDKERLWEEIALLLK 1435
+MG+EKLNSEAAALTAQRLGEALALE DHERA SVFGRAVVASEAL+G KSTQ VACLTGLGLALF QGQLSDAASTLGRALSV AL+PDEGM TSTQDVTKTLDGLAKSL+ R PE GE ELGGALLAVDHIN LA RYF+QKLP+QGESV LQSL VEKEDAG +PS RDLVISALL+NLGFLRLAVLG+F AASVLQQAIELRKAVLGEAHSLT+QAVVSRGWALTLTGDTLLAVEELTS+A+ALLSAGQPHAADRLLRQ LQQGYDPLGGATYAHACYTQHSNMLR WGSEGIAKADAFCLNQLNIA KARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLK NP DKERLWEEI LLLK
Sbjct: 104 EMGSEKLNSEAAALTAQRLGEALALEGDHERAASVFGRAVVASEALFGVKSTQAVACLTGLGLALFRQGQLSDAASTLGRALSVHALRPDEGMVTSTQDVTKTLDGLAKSLIRRPPEGGESELGGALLAVDHINPLAGRYFVQKLPHQGESV----LQSLYVEKEDAGSSEPSALRDLVISALLFNLGFLRLAVLGEFSSAASVLQQAIELRKAVLGEAHSLTMQAVVSRGWALTLTGDTLLAVEELTSAAEALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSNMLRAWGSEGIAKADAFCLNQLNIAKKARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLKLNPSDKERLWEEIGLLLK 472
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: A0A6H5JZA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA8_9PHAE) HSP 1 Score: 228 bits (581), Expect = 3.070e-68 Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 2
Query: 1070 DALLSAGQPHAADRLLRQALQQGYDPLGGATYAHACYTQHSNMLRGWGSEGIAKADAFCLNQLNIASKARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLKFNPGDKERLWEEIALLLK 1435
DALLSAGQPHAADRLLRQ LQQGYDPLGGATYAHACYTQHS MLR WGSEGIAKADAFCLNQL+IA KARLTGKERPMKRATRTLAVAVRAQIEDETEGRELL+ NPGDKERLWEEI LLLK
Sbjct: 17 DALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSTMLRAWGSEGIAKADAFCLNQLDIAKKARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLELNPGDKERLWEEIGLLLK 138
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: A0A6H5JX93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX93_9PHAE) HSP 1 Score: 112 bits (280), Expect = 4.610e-25 Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 2
Query: 320 QMGTEKLNSEAAALTAQRLGEALALERDHERAVSVFGRAVVASEALYGDKSTQTVACLTGLGLALFMQ 523
+MG+EKLNSEAAALTAQRLGEALALE DHERA SVFGRAVVASEAL+G KSTQ VACLTGLGLALF Q
Sbjct: 104 EMGSEKLNSEAAALTAQRLGEALALEGDHERAASVFGRAVVASEALFGVKSTQAVACLTGLGLALFQQ 171
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: D8LCY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY1_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 7.100e-5 Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = -1
Query: 167 TIDHASLRGQSIVPTGPITDGQSFLPTL 250
TIDHAS RG+SIVPTGPITDGQSFLPTL
Sbjct: 726 TIDHASSRGRSIVPTGPITDGQSFLPTL 753
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: A0A6H5KJN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN0_9PHAE) HSP 1 Score: 51.2 bits (121), Expect = 9.160e-5 Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 3
Query: 84 QIPVSAGCHL---RRSTNVFNPLPRPHLTIAKVGRNDWPSVIGPVGTMLCPLKDAWSMV 251
++ V A C L R V P+ HL DWPSVIGPVGTML PL+DAWSMV
Sbjct: 21 RVHVVAECPLYKKEREVYVTEPVSYTHLL-------DWPSVIGPVGTMLRPLEDAWSMV 72 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12409.1854.1 >prot_E-fasciculatus_F_contig12409.1854.1 ID=prot_E-fasciculatus_F_contig12409.1854.1|Name=mRNA_E-fasciculatus_F_contig12409.1854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=372bp MGTEKLNSEAAALTAQRLGEALALERDHERAVSVFGRAVVASEALYGDKSback to top mRNA from alignment at E-fasciculatus_F_contig12409:17..4030- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12409.1854.1 ID=mRNA_E-fasciculatus_F_contig12409.1854.1|Name=mRNA_E-fasciculatus_F_contig12409.1854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12409:17..4030- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12409:17..4030- >mRNA_E-fasciculatus_F_contig12409.1854.1 ID=mRNA_E-fasciculatus_F_contig12409.1854.1|Name=mRNA_E-fasciculatus_F_contig12409.1854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2232bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12409:17..4030- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |