mRNA_E-fasciculatus_F_contig12409.1854.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12409.1854.1
Unique NamemRNA_E-fasciculatus_F_contig12409.1854.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: D7G862_ECTSI (Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G862_ECTSI)

HSP 1 Score: 608 bits (1568), Expect = 1.760e-211
Identity = 330/373 (88.47%), Postives = 343/373 (91.96%), Query Frame = 2
Query:  320 QMGTEKLNSEAAALTAQRLGEALALERDHERAVSVFGRAVVASEALYGDKSTQTVACLTGLGLALFMQGQLSDAASTLGRALSVRALKPDEGMGTSTQDVTKTLDGLAKSLVHRLPEEGEGELGGALLAVDHINRLAWRYFLQKLPYQGESVMKEVLQSLLVEKEDAGL-DPSPPRDLVISALLYNLGFLRLAVLGQFGPAASVLQQAIELRKAVLGEAHSLTVQAVVSRGWALTLTGDTLLAVEELTSSADALLSAGQPHAADRLLRQALQQGYDPLGGATYAHACYTQHSNMLRGWGSEGIAKADAFCLNQLNIASKARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLKFNPGDKERLWEEIALLLK 1435
            +MG+EKLNSEAAALTAQRLGEALALE DHERA SVFGRAVVASEAL+G KSTQ VACLTGLGLALF QGQLSDAASTLGRALSV AL+PDEGM TSTQDVTKTLDGLAKSL+ R PE GE ELGGALLAVDHIN LA RYF+QKLP+QGESV    LQSL VEKEDAG  +PS  RDLVISALL+NLGFLRLAVLG+F  AASVLQQAIELRKAVLGEAHSLT+QAVVSRGWALTLTGDTLLAVEELTS+A+ALLSAGQPHAADRLLRQ LQQGYDPLGGATYAHACYTQHSNMLR WGSEGIAKADAFCLNQLNIA KARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLK NP DKERLWEEI LLLK
Sbjct:  104 EMGSEKLNSEAAALTAQRLGEALALEGDHERAASVFGRAVVASEALFGVKSTQAVACLTGLGLALFRQGQLSDAASTLGRALSVHALRPDEGMVTSTQDVTKTLDGLAKSLIRRPPEGGESELGGALLAVDHINPLAGRYFVQKLPHQGESV----LQSLYVEKEDAGSSEPSALRDLVISALLFNLGFLRLAVLGEFSSAASVLQQAIELRKAVLGEAHSLTMQAVVSRGWALTLTGDTLLAVEELTSAAEALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSNMLRAWGSEGIAKADAFCLNQLNIAKKARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLKLNPSDKERLWEEIGLLLK 472          
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: A0A6H5JZA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA8_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 3.070e-68
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 2
Query: 1070 DALLSAGQPHAADRLLRQALQQGYDPLGGATYAHACYTQHSNMLRGWGSEGIAKADAFCLNQLNIASKARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLKFNPGDKERLWEEIALLLK 1435
            DALLSAGQPHAADRLLRQ LQQGYDPLGGATYAHACYTQHS MLR WGSEGIAKADAFCLNQL+IA KARLTGKERPMKRATRTLAVAVRAQIEDETEGRELL+ NPGDKERLWEEI LLLK
Sbjct:   17 DALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSTMLRAWGSEGIAKADAFCLNQLDIAKKARLTGKERPMKRATRTLAVAVRAQIEDETEGRELLELNPGDKERLWEEIGLLLK 138          
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: A0A6H5JX93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX93_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.610e-25
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  320 QMGTEKLNSEAAALTAQRLGEALALERDHERAVSVFGRAVVASEALYGDKSTQTVACLTGLGLALFMQ 523
            +MG+EKLNSEAAALTAQRLGEALALE DHERA SVFGRAVVASEAL+G KSTQ VACLTGLGLALF Q
Sbjct:  104 EMGSEKLNSEAAALTAQRLGEALALEGDHERAASVFGRAVVASEALFGVKSTQAVACLTGLGLALFQQ 171          
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: D8LCY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY1_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 7.100e-5
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = -1
Query:  167 TIDHASLRGQSIVPTGPITDGQSFLPTL 250
            TIDHAS RG+SIVPTGPITDGQSFLPTL
Sbjct:  726 TIDHASSRGRSIVPTGPITDGQSFLPTL 753          
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Match: A0A6H5KJN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN0_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 9.160e-5
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 3
Query:   84 QIPVSAGCHL---RRSTNVFNPLPRPHLTIAKVGRNDWPSVIGPVGTMLCPLKDAWSMV 251
            ++ V A C L    R   V  P+   HL        DWPSVIGPVGTML PL+DAWSMV
Sbjct:   21 RVHVVAECPLYKKEREVYVTEPVSYTHLL-------DWPSVIGPVGTMLRPLEDAWSMV 72          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12409.1854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G862_ECTSI1.760e-21188.47Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JZA8_9PHAE3.070e-6893.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX93_9PHAE4.610e-2588.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCY1_ECTSI7.100e-592.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJN0_9PHAE9.160e-550.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12409contigE-fasciculatus_F_contig12409:17..4030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_001360.3
Exons6
Model size1966
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12409.1854.1prot_E-fasciculatus_F_contig12409.1854.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12409 545..3708 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927747.1302917-UTR-E-fasciculatus_F_contig12409:16..5441622927747.1302917-UTR-E-fasciculatus_F_contig12409:16..544Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12409 17..544 -
1695995677.6406898-UTR-E-fasciculatus_F_contig12409:16..5441695995677.6406898-UTR-E-fasciculatus_F_contig12409:16..544Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12409 17..544 -
1622927747.320845-UTR-E-fasciculatus_F_contig12409:3708..40301622927747.320845-UTR-E-fasciculatus_F_contig12409:3708..4030Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12409 3709..4030 -
1695995677.7183805-UTR-E-fasciculatus_F_contig12409:3708..40301695995677.7183805-UTR-E-fasciculatus_F_contig12409:3708..4030Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12409 3709..4030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927747.1429274-CDS-E-fasciculatus_F_contig12409:544..6311622927747.1429274-CDS-E-fasciculatus_F_contig12409:544..631Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 545..631 -
1695995677.6491122-CDS-E-fasciculatus_F_contig12409:544..6311695995677.6491122-CDS-E-fasciculatus_F_contig12409:544..631Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 545..631 -
1622927747.2531986-CDS-E-fasciculatus_F_contig12409:1188..13201622927747.2531986-CDS-E-fasciculatus_F_contig12409:1188..1320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 1189..1320 -
1695995677.657293-CDS-E-fasciculatus_F_contig12409:1188..13201695995677.657293-CDS-E-fasciculatus_F_contig12409:1188..1320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 1189..1320 -
1622927747.2680497-CDS-E-fasciculatus_F_contig12409:1728..18851622927747.2680497-CDS-E-fasciculatus_F_contig12409:1728..1885Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 1729..1885 -
1695995677.665661-CDS-E-fasciculatus_F_contig12409:1728..18851695995677.665661-CDS-E-fasciculatus_F_contig12409:1728..1885Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 1729..1885 -
1622927747.2822104-CDS-E-fasciculatus_F_contig12409:2323..26011622927747.2822104-CDS-E-fasciculatus_F_contig12409:2323..2601Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 2324..2601 -
1695995677.674434-CDS-E-fasciculatus_F_contig12409:2323..26011695995677.674434-CDS-E-fasciculatus_F_contig12409:2323..2601Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 2324..2601 -
1622927747.2963374-CDS-E-fasciculatus_F_contig12409:2967..32281622927747.2963374-CDS-E-fasciculatus_F_contig12409:2967..3228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 2968..3228 -
1695995677.6870522-CDS-E-fasciculatus_F_contig12409:2967..32281695995677.6870522-CDS-E-fasciculatus_F_contig12409:2967..3228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 2968..3228 -
1622927747.3090503-CDS-E-fasciculatus_F_contig12409:3507..37081622927747.3090503-CDS-E-fasciculatus_F_contig12409:3507..3708Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 3508..3708 -
1695995677.6975892-CDS-E-fasciculatus_F_contig12409:3507..37081695995677.6975892-CDS-E-fasciculatus_F_contig12409:3507..3708Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12409 3508..3708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12409.1854.1

>prot_E-fasciculatus_F_contig12409.1854.1 ID=prot_E-fasciculatus_F_contig12409.1854.1|Name=mRNA_E-fasciculatus_F_contig12409.1854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=372bp
MGTEKLNSEAAALTAQRLGEALALERDHERAVSVFGRAVVASEALYGDKS
TQTVACLTGLGLALFMQGQLSDAASTLGRALSVRALKPDEGMGTSTQDVT
KTLDGLAKSLVHRLPEEGEGELGGALLAVDHINRLAWRYFLQKLPYQGES
VMKEVLQSLLVEKEDAGLDPSPPRDLVISALLYNLGFLRLAVLGQFGPAA
SVLQQAIELRKAVLGEAHSLTVQAVVSRGWALTLTGDTLLAVEELTSSAD
ALLSAGQPHAADRLLRQALQQGYDPLGGATYAHACYTQHSNMLRGWGSEG
IAKADAFCLNQLNIASKARLTGKERPMKRATRTLAVAVRAQIEDETEGRE
LLKFNPGDKERLWEEIALLLK*
back to top

mRNA from alignment at E-fasciculatus_F_contig12409:17..4030-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12409.1854.1 ID=mRNA_E-fasciculatus_F_contig12409.1854.1|Name=mRNA_E-fasciculatus_F_contig12409.1854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12409:17..4030- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCATCAGTGTAGTTAGGCGAGACCAGGCGATACTGAGCAACTGCGAGC GACGGTTATTGAACGGCATAACGAGAGAAACACCAAATACCCGTCTCAGC AGGCTGCCATCTGAGGCGCAGCACGAACGTTTTCAACCCCCTCCCCCGTC CCCACCTCACCATTGCCAAAGTAGGAAGGAACGATTGGCCATCGGTGATC GGTCCTGTCGGAACAATGCTCTGTCCTCTCAAAGACGCGTGGTCAATGGT CTACCAACCCGTTTACACGATTAGTACACACCCCCCACACTGCCTCCTTT GGCCTACACGAGATCACCCCAGATGGGGACGGAGAAGCTTAATAGCGAGG CGGCTGCGCTCACGGCGCAGCGCCTGGGAGAGGCTCTGGCCCTCGAGAGG GACCACGAGCGCGCTGTCTCGGTGTTCGGCAGGGCGGTTGTCGCGAGCGA GGCTCTGTACGGAGACAAGAGCACTCAGACCGTGGCGTGTTTGACGGGCC TCGGGCTGGCTTTGTTCATGCAGGTGACAAAATTTAATGCAGCGCCAAAC GGAAAATTATTCGACGTGTGTACCTGTTGGGTGTACCAAGCGTAGCTGCC GATACTTCACCCCCCCGCGCCAGGAGGTAGTTCCGCCGGCGTTGTACGTA CGGTGGCGGAAACTCTTGGTCTGAAATATTAGCTTGTGTGCTGCACATGC GTTACCTCCCTTTGATACTCACCTCTTCTTTGTGCATTTTTTTGGGAAGC CTCCTTTCTGCCTCACGCACTCACCCTCTCCGCCTTCACTCCTTGTGTGC AGGGCCAACTATCAGACGCAGCGTCCACTCTTGGGAGGGCGCTGAGCGTC CGCGCGCTCAAGCCGGACGAGGGCATGGGGACGTCCACCCAAGACGTGAC CAAAACTCTGGATGGCCTGGCGAAATCGCTGGTTCACCGTCTCCCGGAGG AGGGCGAGGGCGAGCTTGGCGGGGCATTGCTGGCCGTGGACCACATCAAC CGCCTCGCGTGGCGCTATTTCTTGCAGAAGCTGCCGTACCAGGGGGAGTC CGTGATGAAAGAGGTGGGGAGGGGAAGATTGGCTTTCGGCGTGTCATGCC TGTGGGGGTCGTCGCTATCACTGTAGACGCGGCTTGGGTGAACGCGTGAC TCATAGATGGGAGGGGTTGGGCAGCGGGGTTGACGACGTATACGATTGCT ACGTTGTGGTTTGAAACATAGGACGGCCGGAAGAGTCCATCCTTAACTCC GCGCTGCTAGTACATGCGGGTCCAATGGACTCGATTCCGTGGCTCGTCGA ACGTCCCAAAGTCACTGCGTTCTGGCCAAAGGCTTACCGTAAAAGTACTC CATTGCGTTGGGTTTACCGCGGAGCACACCCTTGCTAAAAAAAAAGCGCC TCCTCCGCCCCCGCCCCCTACTCCGAAAGGTTCTCCAATCACTCCTTGTC GAGAAGGAGGACGCTGGGTTGGACCCTTCCCCGCCGAGAGACCTCGTCAT CTCCGCGTTGCTCTACAACCTCGGGTTCCTCCGCCTGGCGGTCCTCGGGC AGTTCGGTCCCGCCGCGAGCGTGCTGCAGCAGGCAATCGAGCTCAGGAAG GCGGTGCTCGGAGAGGCCCACAGTCTCACGGTGCAGGCGGTGGTGAGCAG GGGCTGGGCCCTGACGCTCACGGGGGACACGTTGCTTGCCGTGGAGGAGC TCACCAGGTGTGCGAGGGAACCCGCCGCGGGACCCGAAGGGTGTTCGTTG AATGAATGGTCTGGTGTGCGTTACTAATATAGTGTAGACTCCCTTTCTTG GTCGTCTACTCGGTCGGGAGGGCTTGAACGGGTGTGTTGTGAAAGGTCTG GTGTGCGGCAGGTTACCTCTTTTGGCCGTCTAATCCGCGGGGAGGTCCGT GGCATGAGCGTGTGGATAGGGGTGAGGGTGGGGGTAGCGACGATAGAGGG CGGTTCGAAAGAGTTGTGTTCTTTCACCGAGCCTGCAAACACCGACAAGA ATGCCCCGTGTTCGGCTTCGGCCAGCAGGACGCCACGACGTGCGCGCCAC GGCCCTTTCCCCATTTTCCGTCGCGATGCAGAGCGTGACACTCTGACACT CTCACGCCGTTTCGTGTGCCCCCTTCTCCCGCCGTTTTGTCCAAGCTCGG CCGACGCCCTGCTCTCGGCCGGGCAGCCACATGCGGCCGACAGGCTCCTC CGCCAGGCGTTGCAGCAAGGCTACGACCCCCTTGGGGGCGCCACGTACGC GCACGCCTGCTACACGCAGCATTCCAACATGCTCAGGGGCTGGGGTAGTG AGGTGAGTGGGGCCCTCTCTCTTGCTGCAGCAAGCCGTGCTGCCGCGAGC CTTGGCGATACAAGCCTGTAAGCGCATGCTGTTGCTGTACCCCAAATAAA GAAAATGATCACGGCAGCTGTTGCTGTACCCCAAATAAAAAAATGATCAC GGCAGCTGTTGCTTTTCACCGGAGTTTGCCGCACCTGGCCAATGAATCTA CACGGATGACGTGGGTACCGCTTGTTCGCACGATTCTCCTCTACGCCGAC AATTTCGGTTGTTCACTTTCGTCGACGCGAAAATAAAAATCACCTCTGCG TTGTAGCGTCTCAAGTGCCCCCCTCGTGGGCTCATGTGCCCCTTCCGTAA CCTACCCACGCTGCGCCTCCTTTTTGAAACTGTGTTCCGCTGCCCCCCGT GCTGCTGTAGGGTATTGCCAAGGCGGACGCTTTCTGCTTGAACCAATTGA ACATCGCGAGCAAGGCCAGGCTTACTGGCAAAGAACGTCCGATGAAGCGA GCGACGAGAACCCTGGCCGTAGCGGTGCGGGCGCAGATTGAGGTAAGGCT AAGACAAAGGGTGGCCTTGTCCGTTCAAGGGGTGCTACAGTACCGCTGCA CCCTCGCACACCACCCTTTCGAAACAAGACCACGTCTGCTCTGGGGATAA AGCTGGAACGGTAAAATAAGTTATGCATAGAAAAGATGTGCAGCTGTTCT CCTGCATATCCTAATTTTAAATCAAGGGGCGAGCGCACGGACTGAACGTG GTACTCAGAAGTGGCCGTGATGTGTGGTACATCTATTTTGGGCGGCGGGG ACGGTGTGTTTCTTGGCTTACAGCCGTCGTAGACAGAGGTGATAGCGCTA CCACACGTGCGGTGGTTGGGGACACGACCGCATGCGACGTCTCTACCGGA ATCGTAGATACGTTGCTCGAAGGGCTGCGGAGACAACTTGTGATCTGTCT GCGGCCCCGTCTTACCTGGTGGTGCATAATGGCACCCCTAAATTGCCTCT TGGTTAGCGTCATCTTTATTCCAGTTGTTGGCAGCTTTCAACACCAAGCA ACACCCCCCACGCCTGGCTTGATCATCCGCGCGGCCGCACGTTGTTCAGG ATGAAACGGAGGGAAGGGAGCTCCTGAAGTTCAACCCAGGCGACAAGGAA CGATTGTGGGAGGAAATAGCGCTGCTTCTAAAGTGATGCAAGCTGCTTAA TGCTTCGCGGCAACTACGTTGACTCAGCTCGGCTTCGAGTTCGTCCGCGC TTTTGGTGGGGGAACAACAGTGGGCTGAGGATAGCCGCGAGGCACACGAG AACTTGTAGAGATTGTAGAAAATAGAAAATAGCCAAATTCCTGCTGGGGC TGCTGCAACGCAAAGTAACACGGGAAAATCCTGTGCACCCTTGTAACTTA AAAACACCATCACCAAAATAATCGTGACGCCTACCGGTCGACTACAAGGC GCTCCCTCTCCTTCCCACATGGGTCTACACCATCTCTGCCGACCTGACAA ACCTTGTGGTTTCTTTGTAGCGGGGGCCACAAGCGTTATATTCCGGGAAT GGTAGCTATCTCTTGTGGTGCTTGGCCGGCGCGATCGGCAGCCGCCGTTG CGTGGGTCATAAGAACCACAAAATCTAGAGTAGAGGCAGCACCAGGCTCG TCCGCCCGCCACAGAGGTAGCTGTAGCTCACGTCCCAAGATACTTTTGTG TGTGTGTGTGTGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12409:17..4030-

>mRNA_E-fasciculatus_F_contig12409.1854.1 ID=mRNA_E-fasciculatus_F_contig12409.1854.1|Name=mRNA_E-fasciculatus_F_contig12409.1854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2232bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12409:17..4030- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGACGGAGAAGCTTAATAGCGAGGCGGCTGCGCTCACGGCGCAGCG
CCTGGGAGAGGCTCTGGCCCTCGAGAGGGACCACGAGCGCGCTGTCTCGG
TGTTCGGCAGGGCGGTTGTCGCGAGCGAGGCTCTGTACGGAGACAAGAGC
ACTCAGACCGTGGCGTGTTTGACGGGCCTCGGGCTGGCTTTGTTCATGCA
GATGGGGACGGAGAAGCTTAATAGCGAGGCGGCTGCGCTCACGGCGCAGC
GCCTGGGAGAGGCTCTGGCCCTCGAGAGGGACCACGAGCGCGCTGTCTCG
GTGTTCGGCAGGGCGGTTGTCGCGAGCGAGGCTCTGTACGGAGACAAGAG
CACTCAGACCGTGGCGTGTTTGACGGGCCTCGGGCTGGCTTTGTTCATGC
AGGGCCAACTATCAGACGCAGCGTCCACTCTTGGGAGGGCGCTGAGCGTC
CGCGCGCTCAAGCCGGACGAGGGCATGGGGACGTCCACCCAAGACGTGAC
CAAAACTCTGGATGGCCTGGCGAAATCGCTGGTTCACCGTCTCCCGGAGG
AGGGCGAGGGCGAGCTTGGCGGGGCATTGCTGGCCGTGGACCACATCAAC
CGCCTCGCGTGGCGCTATTTCTTGCAGAAGCTGCCGTACCAGGGGGAGTC
CGTGATGAAAGAGGGCCAACTATCAGACGCAGCGTCCACTCTTGGGAGGG
CGCTGAGCGTCCGCGCGCTCAAGCCGGACGAGGGCATGGGGACGTCCACC
CAAGACGTGACCAAAACTCTGGATGGCCTGGCGAAATCGCTGGTTCACCG
TCTCCCGGAGGAGGGCGAGGGCGAGCTTGGCGGGGCATTGCTGGCCGTGG
ACCACATCAACCGCCTCGCGTGGCGCTATTTCTTGCAGAAGCTGCCGTAC
CAGGGGGAGTCCGTGATGAAAGAGGTTCTCCAATCACTCCTTGTCGAGAA
GGAGGACGCTGGGTTGGACCCTTCCCCGCCGAGAGACCTCGTCATCTCCG
CGTTGCTCTACAACCTCGGGTTCCTCCGCCTGGCGGTCCTCGGGCAGTTC
GGTCCCGCCGCGAGCGTGCTGCAGCAGGCAATCGAGCTCAGGAAGGCGGT
GCTCGGAGAGGCCCACAGTCTCACGGTGCAGGCGGTGGTGAGCAGGGGCT
GGGCCCTGACGCTCACGGGGGACACGTTGCTTGCCGTGGAGGAGCTCACC
AGGTTCTCCAATCACTCCTTGTCGAGAAGGAGGACGCTGGGTTGGACCCT
TCCCCGCCGAGAGACCTCGTCATCTCCGCGTTGCTCTACAACCTCGGGTT
CCTCCGCCTGGCGGTCCTCGGGCAGTTCGGTCCCGCCGCGAGCGTGCTGC
AGCAGGCAATCGAGCTCAGGAAGGCGGTGCTCGGAGAGGCCCACAGTCTC
ACGGTGCAGGCGGTGGTGAGCAGGGGCTGGGCCCTGACGCTCACGGGGGA
CACGTTGCTTGCCGTGGAGGAGCTCACCAGCTCGGCCGACGCCCTGCTCT
CGGCCGGGCAGCCACATGCGGCCGACAGGCTCCTCCGCCAGGCGTTGCAG
CAAGGCTACGACCCCCTTGGGGGCGCCACGTACGCGCACGCCTGCTACAC
GCAGCATTCCAACATGCTCAGGGGCTGGGGTAGTGAGCTCGGCCGACGCC
CTGCTCTCGGCCGGGCAGCCACATGCGGCCGACAGGCTCCTCCGCCAGGC
GTTGCAGCAAGGCTACGACCCCCTTGGGGGCGCCACGTACGCGCACGCCT
GCTACACGCAGCATTCCAACATGCTCAGGGGCTGGGGTAGTGAGGGTATT
GCCAAGGCGGACGCTTTCTGCTTGAACCAATTGAACATCGCGAGCAAGGC
CAGGCTTACTGGCAAAGAACGTCCGATGAAGCGAGCGACGAGAACCCTGG
CCGTAGCGGTGCGGGCGCAGATTGAGGGTATTGCCAAGGCGGACGCTTTC
TGCTTGAACCAATTGAACATCGCGAGCAAGGCCAGGCTTACTGGCAAAGA
ACGTCCGATGAAGCGAGCGACGAGAACCCTGGCCGTAGCGGTGCGGGCGC
AGATTGAGGATGAAACGGAGGGAAGGGAGCTCCTGAAGTTCAACCCAGGC
GACAAGGAACGATTGTGGGAGGAAATAGCGCTGCTTCTAAAGTGAGATGA
AACGGAGGGAAGGGAGCTCCTGAAGTTCAACCCAGGCGACAAGGAACGAT
TGTGGGAGGAAATAGCGCTGCTTCTAAAGTGA
back to top