mRNA_E-fasciculatus_F_contig12407.1853.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12407.1853.1
Unique NamemRNA_E-fasciculatus_F_contig12407.1853.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12407.1853.1 vs. uniprot
Match: A0A6H5KLY0_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY0_9PHAE)

HSP 1 Score: 587 bits (1514), Expect = 4.810e-198
Identity = 354/392 (90.31%), Postives = 356/392 (90.82%), Query Frame = 1 
Query:   10 KRKAAWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVEHRDQLGTVILQLLRRTPPVSPSPVHGSAVPQPLPFAPVVISRLCLALAAVAVRAANGVEAYVREAFALSQSAASGAAAGAGVGAHPATVALSLQMIKVLPQEVDGADLSRARRLELQDQVREHSSTVLHGLESVLAGSVAEPAAAVAAGPDQNGTGAPVGSGGGGLGEAXXXXX--TTEDVVLAALDCLREWTKLGVSLGRLATDRPLLLDRVVRLLGGEGXXXXXXXXXXXXXXLPTACAACEVMLELLAVKEYPRSPAQGVSEALLGAMGKMPALFAAAIQTKDEESASTLCNTVVSFAQEEMPLVAGQEGKGLPLVELLLSLAACDLPRIPVLTLDFWLELQ 1179
            ++ AAWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVEHRDQLGTVILQLLRRTP VSPSPVHGSAVPQPLPFAPVVISRLCLALAAVAVRAANGVEAYVREAFALSQS ASG AAGAGVGAHPATVALSLQMIKVLPQEVDGADLSRARRLELQDQVREHSSTVLHGLESVLAGSVAEPAA                         XXXXX   TEDVVLAALDCLREWTKLGVSLGRLATDRPLLLDRVVRLLGGEGXXXXXXXXXXXXX LPTACAACEVM ELLAVKEYPRSPAQGVSEALLGAMGKMP LFAAAIQTKDEESASTLCNTVVSFAQEEMPLVAGQEGKGLPLVELLLSL ACDLPRIPVLTLDFWLELQ
Sbjct:   37 EQPAAWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVEHRDQLGTVILQLLRRTPAVSPSPVHGSAVPQPLPFAPVVISRLCLALAAVAVRAANGVEAYVREAFALSQS-ASGPAAGAGVGAHPATVALSLQMIKVLPQEVDGADLSRARRLELQDQVREHSSTVLHGLESVLAGSVAEPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATEDVVLAALDCLREWTKLGVSLGRLATDRPLLLDRVVRLLGGEGXXXXXXXXXXXXX-LPTACAACEVMSELLAVKEYPRSPAQGVSEALLGAMGKMPVLFAAAIQTKDEESASTLCNTVVSFAQEEMPLVAGQEGKGLPLVELLLSLTACDLPRIPVLTLDFWLELQ 426
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12407.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLY0_9PHAE4.810e-19890.31Importin N-terminal domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12407contigE-fasciculatus_F_contig12407:545..3241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score593.6
Seed ortholog evalue7e-167
Seed eggNOG ortholog2880.D8LBP4
Preferred nameIPO13
KEGG koko:K15436
GOsGO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007270,GO:0008104,GO:0008134,GO:0008139,GO:0008150,GO:0008565,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0023051,GO:0023052,GO:0031074,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0035257,GO:0035258,GO:0035259,GO:0038023,GO:0040011,GO:0042277,GO:0042330,GO:0042331,GO:0042564,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050789,GO:0050794,GO:0050804,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051427,GO:0051641,GO:0051649,GO:0051716,GO:0060089,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0098916,GO:0099177,GO:0099536,GO:0099537
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2022@1,KOG2022@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size1200
Cds size1200
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12407.1853.1prot_E-fasciculatus_F_contig12407.1853.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12407 545..3241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927747.0542464-CDS-E-fasciculatus_F_contig12407:544..7511622927747.0542464-CDS-E-fasciculatus_F_contig12407:544..751Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12407 545..751 -
1695995677.6040907-CDS-E-fasciculatus_F_contig12407:544..7511695995677.6040907-CDS-E-fasciculatus_F_contig12407:544..751Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12407 545..751 -
1622927747.0651195-CDS-E-fasciculatus_F_contig12407:1272..19051622927747.0651195-CDS-E-fasciculatus_F_contig12407:1272..1905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12407 1273..1905 -
1695995677.6145105-CDS-E-fasciculatus_F_contig12407:1272..19051695995677.6145105-CDS-E-fasciculatus_F_contig12407:1272..1905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12407 1273..1905 -
1622927747.0813978-CDS-E-fasciculatus_F_contig12407:2493..26701622927747.0813978-CDS-E-fasciculatus_F_contig12407:2493..2670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12407 2494..2670 -
1695995677.6230512-CDS-E-fasciculatus_F_contig12407:2493..26701695995677.6230512-CDS-E-fasciculatus_F_contig12407:2493..2670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12407 2494..2670 -
1622927747.096356-CDS-E-fasciculatus_F_contig12407:3058..32411622927747.096356-CDS-E-fasciculatus_F_contig12407:3058..3241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12407 3059..3241 -
1695995677.6307106-CDS-E-fasciculatus_F_contig12407:3058..32411695995677.6307106-CDS-E-fasciculatus_F_contig12407:3058..3241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12407 3059..3241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12407.1853.1

>prot_E-fasciculatus_F_contig12407.1853.1 ID=prot_E-fasciculatus_F_contig12407.1853.1|Name=mRNA_E-fasciculatus_F_contig12407.1853.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=400bp
MQNKRKAAWSISVELLSASVAPESASALHYFAANTLYTKVRKHWHQLEVE
HRDQLGTVILQLLRRTPPVSPSPVHGSAVPQPLPFAPVVISRLCLALAAV
AVRAANGVEAYVREAFALSQSAASGAAAGAGVGAHPATVALSLQMIKVLP
QEVDGADLSRARRLELQDQVREHSSTVLHGLESVLAGSVAEPAAAVAAGP
DQNGTGAPVGSGGGGLGEAAAGGGTTEDVVLAALDCLREWTKLGVSLGRL
ATDRPLLLDRVVRLLGGEGGPGGGGGGGGGAAALPTACAACEVMLELLAV
KEYPRSPAQGVSEALLGAMGKMPALFAAAIQTKDEESASTLCNTVVSFAQ
EEMPLVAGQEGKGLPLVELLLSLAACDLPRIPVLTLDFWLELQVGWGVR*
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mRNA from alignment at E-fasciculatus_F_contig12407:545..3241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12407.1853.1 ID=mRNA_E-fasciculatus_F_contig12407.1853.1|Name=mRNA_E-fasciculatus_F_contig12407.1853.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2697bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12407:545..3241- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAAACAAACGCAAGGCGGCGTGGTCGATAAGCGTGGAGCTCCTGTC
TGCTTCCGTCGCGCCGGAGTCGGCCTCCGCTCTTCACTACTTCGCGGCCA
ACACTCTCTACACTAAGGTCCGCAAGCACTGGCACCAGCTGGAGGTGGAG
CATCGAGACCAACTAGGCACCGTCATCCTCCAGGTACAGCTGTAGTTCAT
GATAGTATGTTTCTCTGTGTATTCTGCCATAGGCCCGATCGCTTCGTATG
TTTTGTTCGGTGTAGGACGCAAACAAGGTTGCTGAGTTGTTTTTTGCTGC
GTTCCTTTATATTTCGAAGTCCATTATTTTTCAGTGCTCCTACCAGGCAA
GCCAAGGCTAGTCTAGGATTCTGTTTTGGTTTTGAAACTCGCACCCTTCC
TTCGGGTATTGAGCATGGGACAAGTCAGCTACCTCCCGTCAGCTAACCCC
CGCTTTCACGCTGCCGGCAATGACCAATAGCACCCTGGGGGGGCGTAGTG
TCGCGTGCAACACGCACCAACCCCCAACCCCCCAACACAGTTTTCTTCCA
CTTTTCGAATCGTCTGTGCAGCTGTTGCGGAGAACCCCTCCGGTCTCGCC
ATCACCGGTTCATGGCTCCGCGGTGCCGCAGCCGCTACCGTTCGCCCCGG
TGGTGATCAGCCGGCTGTGCTTGGCGCTGGCAGCCGTGGCCGTTCGAGCG
GCAAATGGGGTCGAGGCGTACGTGCGAGAAGCATTCGCTTTGAGCCAGGT
ATGTAAACATGTAAACAATGTATGTACTTCGTGTTCCGTTTTGGCTATGT
ATTCCTTGTTGCTCCTTCAGAGGGATTTATGTCTTCGGTGGTAGCGGCTC
CGTGTGAGAGATTCAAGCGTACGACGTACTTGTTGCGACGGAGCAGAGCG
CCACGCCTTGAACAAAAATCTCGCCAGGAACTGCTACGTGTAGTGCAATG
GTGTGTTCAGTTTGTGTATACAGCAGTAGTGTAATAACGATAACACAAAC
TAAGTGCAGACTACGGAGGGTCGTCTGAGTCACTGAAGTGTGGAGGTGCT
CCATCAAGTTCAGAACGACTTGCTTCCGTGCCAAGTTGATGTATCACCAC
AACAGTAGTACGACAACAATAACGACAGCCAACGACTGCCAGTGGTGGGT
GGTCGGTGGGTGTCCGTGACTAGACCATGAATCGGTGTGCATCCGCGTGT
CCAGAAGGGTTGCGGCGCTGTAGACACCAGAACCCCCCCCCCAATACGCC
CGTCCCCGCCCGCATATCTCCCGCCCCTGCACACCCTCGCTGGTCGATGC
TTGCTCTCGTATAAAACCGACCACTCGAAAACACAGTCTGCTGCCTCTGG
GGCCGCGGCGGGGGCGGGTGTGGGTGCGCACCCCGCGACGGTGGCGCTGT
CGCTTCAGATGATCAAGGTCTTGCCCCAGGAGGTGGACGGGGCCGACCTG
TCCCGCGCCCGGCGGCTCGAGCTGCAGGACCAGGTCCGGGAGCACAGCTC
GACGGTCCTGCACGGTCTCGAGTCCGTGCTAGCGGGAAGCGTGGCGGAGC
CGGCGGCGGCGGTCGCCGCAGGTCCAGATCAGAACGGGACCGGGGCACCG
GTAGGATCTGGGGGTGGTGGCCTTGGGGAGGCGGCGGCGGGTGGCGGGAC
CACCGAAGACGTCGTGCTGGCCGCGCTGGACTGCTTGAGGGAGTGGACGA
AGCTGGGCGTCTCCCTGGGCAGGCTAGCGACGGACAGACCCCTGCTGTTG
GACCGGGTCGTGAGGCTGCTCGGCGGGGAGGGGGGTCCCGGGGGCGGGGG
AGGGGGAGGGGGGGGAGCGGCGGCGCTCCCCACCGCGTGCGCGGCCTGCG
AAGTGATGTTGGAGCTGCTGGCGGTGAAGGAGTACCCGCGGTCGCCGGCG
CAGGGCGTGTCGGAGGCGCTGCTAGGCGCGATGGGGAAGATGCCCGCGCT
TTTTGCAGCCGCCATACAGGTGTGTGGGTGTGGGCTTTGTGTCTTTTTTA
TTGGCACCCAACCGCGCTGCCCGGTGCTTGTGTGTGCGAGTATGCCCGCG
TAGATGGGTTGACTTGCCTACTGCGTATGGCGTGCGGCATCAGGCGCGGA
CCAACGTGGCTCATCTTCGCTGCCTGTGTGCCCCCCAACCTTGTCTGTGG
TTGCTGTGCCCTGGCCTTTGGCGCGTGCGTATTGCCAGGTATCATGGTAG
GGTGGATGTCATCCGACACAGATGGTATTCCAGGACCGGCGGAGTGCTTG
TGGCAATTGTTGCAGAAGATTTTCACGAGACCAACAGAAACCATACGTGA
CGCAACGCAACGAGTCCGTTTTCTACGGTAGTATGCATATGATACATCTT
CTAAGCCCTCCCGAACCGACTTTGAAGGGATGCGAGGTCAATGGTCTGAC
GACTGCGGCATGCACGACTATTGAGTACCAACGCCCCCCCCCCCTACTAT
ACCCCCGTGCGGATCCCCTTCCTCCTTGCTCACCCACCAGACGAAGGATG
AGGAATCGGCGTCGACCCTTTGCAACACAGTTGTTTCGTTTGCCCAGGAG
GAGATGCCTCTTGTCGCGGGGCAGGAGGGCAAGGGCCTGCCGCTGGTGGA
GCTGCTGCTGAGCCTGGCGGCGTGCGACCTGCCGAGAATACCCGTCCTCA
CGCTGGATTTCTGGCTGGAGTTGCAGGTGGGTTGGGGGGTCCGTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12407:545..3241-

>mRNA_E-fasciculatus_F_contig12407.1853.1 ID=mRNA_E-fasciculatus_F_contig12407.1853.1|Name=mRNA_E-fasciculatus_F_contig12407.1853.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2400bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12407:545..3241- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAAACAAACGCAAGGCGGCGTGGTCGATAAGCGTGGAGCTCCTGTC
TGCTTCCGTCGCGCCGGAGTCGGCCTCCGCTCTTCACTACTTCGCGGCCA
ACACTCTCTACACTAAGGTCCGCAAGCACTGGCACCAGCTGGAGGTGGAG
CATCGAGACCAACTAGGCACCGTCATCCTCCAGATGCAAAACAAACGCAA
GGCGGCGTGGTCGATAAGCGTGGAGCTCCTGTCTGCTTCCGTCGCGCCGG
AGTCGGCCTCCGCTCTTCACTACTTCGCGGCCAACACTCTCTACACTAAG
GTCCGCAAGCACTGGCACCAGCTGGAGGTGGAGCATCGAGACCAACTAGG
CACCGTCATCCTCCAGCTGTTGCGGAGAACCCCTCCGGTCTCGCCATCAC
CGGTTCATGGCTCCGCGGTGCCGCAGCCGCTACCGTTCGCCCCGGTGGTG
ATCAGCCGGCTGTGCTTGGCGCTGGCAGCCGTGGCCGTTCGAGCGGCAAA
TGGGGTCGAGGCGTACGTGCGAGAAGCATTCGCTTTGAGCCAGCTGTTGC
GGAGAACCCCTCCGGTCTCGCCATCACCGGTTCATGGCTCCGCGGTGCCG
CAGCCGCTACCGTTCGCCCCGGTGGTGATCAGCCGGCTGTGCTTGGCGCT
GGCAGCCGTGGCCGTTCGAGCGGCAAATGGGGTCGAGGCGTACGTGCGAG
AAGCATTCGCTTTGAGCCAGTCTGCTGCCTCTGGGGCCGCGGCGGGGGCG
GGTGTGGGTGCGCACCCCGCGACGGTGGCGCTGTCGCTTCAGATGATCAA
GGTCTTGCCCCAGGAGGTGGACGGGGCCGACCTGTCCCGCGCCCGGCGGC
TCGAGCTGCAGGACCAGGTCCGGGAGCACAGCTCGACGGTCCTGCACGGT
CTCGAGTCCGTGCTAGCGGGAAGCGTGGCGGAGCCGGCGGCGGCGGTCGC
CGCAGGTCCAGATCAGAACGGGACCGGGGCACCGGTAGGATCTGGGGGTG
GTGGCCTTGGGGAGGCGGCGGCGGGTGGCGGGACCACCGAAGACGTCGTG
CTGGCCGCGCTGGACTGCTTGAGGGAGTGGACGAAGCTGGGCGTCTCCCT
GGGCAGGCTAGCGACGGACAGACCCCTGCTGTTGGACCGGGTCGTGAGGC
TGCTCGGCGGGGAGGGGGGTCCCGGGGGCGGGGGAGGGGGAGGGGGGGGA
GCGGCGGCGCTCCCCACCGCGTGCGCGGCCTGCGAAGTGATGTTGGAGCT
GCTGGCGGTGAAGGAGTACCCGCGGTCGCCGGCGCAGGGCGTGTCGGAGG
CGCTGCTAGGCGCGATGGGGAAGATGCCCGCGCTTTTTGCAGCCGCCATA
CAGTCTGCTGCCTCTGGGGCCGCGGCGGGGGCGGGTGTGGGTGCGCACCC
CGCGACGGTGGCGCTGTCGCTTCAGATGATCAAGGTCTTGCCCCAGGAGG
TGGACGGGGCCGACCTGTCCCGCGCCCGGCGGCTCGAGCTGCAGGACCAG
GTCCGGGAGCACAGCTCGACGGTCCTGCACGGTCTCGAGTCCGTGCTAGC
GGGAAGCGTGGCGGAGCCGGCGGCGGCGGTCGCCGCAGGTCCAGATCAGA
ACGGGACCGGGGCACCGGTAGGATCTGGGGGTGGTGGCCTTGGGGAGGCG
GCGGCGGGTGGCGGGACCACCGAAGACGTCGTGCTGGCCGCGCTGGACTG
CTTGAGGGAGTGGACGAAGCTGGGCGTCTCCCTGGGCAGGCTAGCGACGG
ACAGACCCCTGCTGTTGGACCGGGTCGTGAGGCTGCTCGGCGGGGAGGGG
GGTCCCGGGGGCGGGGGAGGGGGAGGGGGGGGAGCGGCGGCGCTCCCCAC
CGCGTGCGCGGCCTGCGAAGTGATGTTGGAGCTGCTGGCGGTGAAGGAGT
ACCCGCGGTCGCCGGCGCAGGGCGTGTCGGAGGCGCTGCTAGGCGCGATG
GGGAAGATGCCCGCGCTTTTTGCAGCCGCCATACAGACGAAGGATGAGGA
ATCGGCGTCGACCCTTTGCAACACAGTTGTTTCGTTTGCCCAGGAGGAGA
TGCCTCTTGTCGCGGGGCAGGAGGGCAAGGGCCTGCCGCTGGTGGAGCTG
CTGCTGAGCCTGGCGGCGTGCGACCTGCCGAGAATACCCGTCCTCACGCT
GGATTTCTGGCTGGAGTTGCAGGTGGGTTGGGGGGTCCGTTAGACGAAGG
ATGAGGAATCGGCGTCGACCCTTTGCAACACAGTTGTTTCGTTTGCCCAG
GAGGAGATGCCTCTTGTCGCGGGGCAGGAGGGCAAGGGCCTGCCGCTGGT
GGAGCTGCTGCTGAGCCTGGCGGCGTGCGACCTGCCGAGAATACCCGTCC
TCACGCTGGATTTCTGGCTGGAGTTGCAGGTGGGTTGGGGGGTCCGTTAG
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