mRNA_E-fasciculatus_F_contig12400.1851.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12400.1851.1
Unique NamemRNA_E-fasciculatus_F_contig12400.1851.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12400.1851.1 vs. uniprot
Match: D8LDR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR1_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 1.630e-89
Identity = 154/177 (87.01%), Postives = 157/177 (88.70%), Query Frame = 1 
Query:    1 MPLKRPVLHPNGRRG-GGSGSGTSPGAARVRVERDHRTRLFESIRGNRDKIGRAMNSLRDAMRSGDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLDSVGSGEDGGGGSNS--DGGDTSEDMSWGFDQTFFGEEGDN-DDDPDDYDDI 519
            MPLKRP+LHPNGRRG G SG GT P  ARVRVERD RTRLFESIRGNR+KIGRAMNSLRDAMR+GDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLD   S EDG        DGGDTSEDMSWGFDQTFFGEEGDN DDDPDDYDDI
Sbjct:    1 MPLKRPMLHPNGRRGDGSSGGGTCP-RARVRVERDRRTRLFESIRGNREKIGRAMNSLRDAMRTGDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLDV--SAEDGXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNIDDDPDDYDDI 174
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12400.1851.1 vs. uniprot
Match: A0A6H5L051_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L051_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 2.600e-73
Identity = 132/158 (83.54%), Postives = 137/158 (86.71%), Query Frame = 1 
Query:   64 TSPGAARVRVERDHRTRLFESIRGNRDKIGRAMNSLRDAMRSGDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLDSVGSGEDGGGGSNS-----DGGDTSEDMSWGFDQTFFGEEGDN-DDDPDDYDDI 519
            +SPGA RVRV+RD RTRLFESIRGNR+KIGRAMNSLRDAMRSGDEEL ERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLE+I QNPFRHSLLD     EDG           DGGDTSEDMSWGFDQTFFGEEGDN DDDPDDYD+I
Sbjct:   68 SSPGA-RVRVQRDRRTRLFESIRGNREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEDIKQNPFRHSLLDVS---EDGXXXXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNIDDDPDDYDNI 221
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12400.1851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDR1_ECTSI1.630e-8987.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L051_9PHAE2.600e-7383.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12400contigE-fasciculatus_F_contig12400:244..1322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001650.1
Exons3
Model size522
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12400.1851.1prot_E-fasciculatus_F_contig12400.1851.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12400 244..1322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927746.8519063-CDS-E-fasciculatus_F_contig12400:243..4471622927746.8519063-CDS-E-fasciculatus_F_contig12400:243..447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12400 244..447 -
1695995677.5163832-CDS-E-fasciculatus_F_contig12400:243..4471695995677.5163832-CDS-E-fasciculatus_F_contig12400:243..447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12400 244..447 -
1622927746.8630106-CDS-E-fasciculatus_F_contig12400:737..8721622927746.8630106-CDS-E-fasciculatus_F_contig12400:737..872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12400 738..872 -
1695995677.5264614-CDS-E-fasciculatus_F_contig12400:737..8721695995677.5264614-CDS-E-fasciculatus_F_contig12400:737..872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12400 738..872 -
1622927746.8730268-CDS-E-fasciculatus_F_contig12400:1139..13221622927746.8730268-CDS-E-fasciculatus_F_contig12400:1139..1322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12400 1140..1322 -
1695995677.5371315-CDS-E-fasciculatus_F_contig12400:1139..13221695995677.5371315-CDS-E-fasciculatus_F_contig12400:1139..1322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12400 1140..1322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12400.1851.1

>prot_E-fasciculatus_F_contig12400.1851.1 ID=prot_E-fasciculatus_F_contig12400.1851.1|Name=mRNA_E-fasciculatus_F_contig12400.1851.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=174bp
MPLKRPVLHPNGRRGGGSGSGTSPGAARVRVERDHRTRLFESIRGNRDKI
GRAMNSLRDAMRSGDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGL
FSTAAKLKLKLEEINQNPFRHSLLDSVGSGEDGGGGSNSDGGDTSEDMSW
GFDQTFFGEEGDNDDDPDDYDDI*
back to top

mRNA from alignment at E-fasciculatus_F_contig12400:244..1322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12400.1851.1 ID=mRNA_E-fasciculatus_F_contig12400.1851.1|Name=mRNA_E-fasciculatus_F_contig12400.1851.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1079bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12400:244..1322- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCTTGAAACGACCGGTGCTCCACCCAAACGGTAGGCGGGGCGGGGG
AAGCGGCAGCGGAACCAGCCCAGGCGCAGCACGGGTGAGGGTCGAGCGTG
ACCACCGCACGCGGCTGTTCGAGAGCATCCGCGGCAACCGGGACAAGATC
GGGCGGGCGATGAACAGCCTCCGCGATGCGATGGTGAGAGGAGACCCAGA
CAGCGAGCAGCGATTTCTCGCTCGCCTCTTCGGTGGTGCCTGATGTGCGT
GTATGCATACTACTACTGCTGTAGATGCGGATCTGCGAAGAGCTTGATCG
TGCACCTCCTACAATTTCTCAGTGCCTCCGACCTGCACAAGCAACTGGTG
TGGGTGCGCCGGACGCCCCTAACGGAACCGCCCGCTACTATTGCGTTTGC
TGTTTTTTTTCCGCGGGCCTGTTGTGCGGTGGCGGGGGACGAAAGTATAG
AGGTCGGGCGACGAGGAGTTGGCCGAGAGGCTGAAGGCGTTCATCATGCA
CCTCCGGAAGCGGGACCCCCAGTTCGCTACGCAGGACGCGATGGACGAAG
CCCTGGAACAGGGCCTGTTCTCCACGGCGGCCAAGGTGTGTATGTCTGTT
ATTTTCTTATCATCGGCCGCGCAATCTTGTTGACCAATGAAAACGCGTCA
TTTAGCGTCGACCTCGCCCACCGGCGGAGCAGCGATAGCGGGTGCTTCCT
TTGGACGAGCTAATTCGTACCAAGTCGCAGGTACGTTGTTCTGCCCTTCC
AAGCTGTATTAAATAACTCGCTGTCCGGCCTGTTGTGCCATCTCATCCCC
TCTGCTGTCCCGGTTCGAAACACGGGCCCCCCGCTGTCTGTCTCTTGCGC
TCTACCAACACAACCAACCGCGAAGCTCAAGCTCAAGCTGGAGGAAATCA
ACCAGAACCCGTTCCGACATAGCCTTCTGGACAGCGTCGGTTCCGGGGAG
GACGGCGGCGGCGGGAGCAATAGCGATGGCGGGGACACATCGGAGGACAT
GAGCTGGGGCTTCGACCAGACCTTCTTCGGGGAGGAGGGGGACAACGACG
ACGACCCAGACGACTACGACGACATATAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12400:244..1322-

>mRNA_E-fasciculatus_F_contig12400.1851.1 ID=mRNA_E-fasciculatus_F_contig12400.1851.1|Name=mRNA_E-fasciculatus_F_contig12400.1851.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12400:244..1322- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCTTGAAACGACCGGTGCTCCACCCAAACGGTAGGCGGGGCGGGGG
AAGCGGCAGCGGAACCAGCCCAGGCGCAGCACGGGTGAGGGTCGAGCGTG
ACCACCGCACGCGGCTGTTCGAGAGCATCCGCGGCAACCGGGACAAGATC
GGGCGGGCGATGAACAGCCTCCGCGATGCGATGATGCCCTTGAAACGACC
GGTGCTCCACCCAAACGGTAGGCGGGGCGGGGGAAGCGGCAGCGGAACCA
GCCCAGGCGCAGCACGGGTGAGGGTCGAGCGTGACCACCGCACGCGGCTG
TTCGAGAGCATCCGCGGCAACCGGGACAAGATCGGGCGGGCGATGAACAG
CCTCCGCGATGCGATGAGGTCGGGCGACGAGGAGTTGGCCGAGAGGCTGA
AGGCGTTCATCATGCACCTCCGGAAGCGGGACCCCCAGTTCGCTACGCAG
GACGCGATGGACGAAGCCCTGGAACAGGGCCTGTTCTCCACGGCGGCCAA
GAGGTCGGGCGACGAGGAGTTGGCCGAGAGGCTGAAGGCGTTCATCATGC
ACCTCCGGAAGCGGGACCCCCAGTTCGCTACGCAGGACGCGATGGACGAA
GCCCTGGAACAGGGCCTGTTCTCCACGGCGGCCAAGCTCAAGCTCAAGCT
GGAGGAAATCAACCAGAACCCGTTCCGACATAGCCTTCTGGACAGCGTCG
GTTCCGGGGAGGACGGCGGCGGCGGGAGCAATAGCGATGGCGGGGACACA
TCGGAGGACATGAGCTGGGGCTTCGACCAGACCTTCTTCGGGGAGGAGGG
GGACAACGACGACGACCCAGACGACTACGACGACATATAACTCAAGCTCA
AGCTGGAGGAAATCAACCAGAACCCGTTCCGACATAGCCTTCTGGACAGC
GTCGGTTCCGGGGAGGACGGCGGCGGCGGGAGCAATAGCGATGGCGGGGA
CACATCGGAGGACATGAGCTGGGGCTTCGACCAGACCTTCTTCGGGGAGG
AGGGGGACAACGACGACGACCCAGACGACTACGACGACATATAA
back to top