prot_E-fasciculatus_F_contig1240.1850.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1240.1850.1
Unique Nameprot_E-fasciculatus_F_contig1240.1850.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length224
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1240.1850.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 409 bits (1051), Expect = 8.040e-144
Identity = 204/223 (91.48%), Postives = 213/223 (95.52%), Query Frame = 0 
Query:    1 MSFRSRQTEMSREEDSAATLVRPKHAAISCSHFWANALVVTGLSSVVVGVIIFTEWRGVGSFWVGAVAMAAGTSGIYVTQGEPSGGLATVFYALLSLVTLAASIVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEEACVCWEPDGTDVCSDAGSVRYCVPYGGDSCSDIKDSENFLLGSFIILVIIAFCSFCSLVVAVNTCWYCKRTIVVESSEQPTGYR 223
            MS+RSRQTE+S EEDS A +VRPKHAAISCSH WANALVV GLSSVVVGVIIFTEW+G+GSFWVGAVAMAAGTSGIYVTQGE SGGLATVFYALLSLVTLAAS+VSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPE+ACVCWEPDGTDVCSDAGSVRYCVP+GGDSCSDIKDSEN LLGSFIILVIIAFCSF SLVVAVNTCWYCKRTIVVESSE+  GYR
Sbjct:    1 MSYRSRQTEISPEEDSGAGMVRPKHAAISCSHLWANALVVVGLSSVVVGVIIFTEWKGMGSFWVGAVAMAAGTSGIYVTQGEASGGLATVFYALLSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCSDAGSVRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVESSEESPGYR 223
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BLAST of mRNA_E-fasciculatus_F_contig1240.1850.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 7.950e-38
Identity = 77/205 (37.56%), Postives = 110/205 (53.66%), Query Frame = 0 
Query:   16 SAATLVRPKHAAISCSHFWANALVVTGLSSVVVGVIIFTEWRGVGSFWVGAVAMAAGTSGIYVTQGEPSGGLATVFYALLSLVTLAASIVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEEACVCWEPDGTDVCSDAGSVRYCVPYGGDSCSDIKDSENFLLGSFIILVIIAFCSFCSLVVAVNTCWYCKRTIVVESSEQPT 220
            S  +L RP    +  SH     LV  G + +VVG +IF +W+  G FWVG +A+AAG +G  V+  E SGG  T  +   S + L A+ +S+ L +G  +  V+   GNC D   C  D C    CVCWEPDG+  C D  S R C+ Y G SC +I+DSE+ L  S  + +II      +++V   TC  CK T+++   +  T
Sbjct:   32 SGISLTRPFPRIVKASHVLGWILVAAGSAEIVVGALIFNDWKYAGGFWVGFMALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQGSSCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCKYTVLLRREDGVT 236
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1240.1850.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV47_9PHAE8.040e-14491.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U1_ECTSI7.950e-3837.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 202..223
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..59
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..201
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 110..177
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 79..89
NoneNo IPR availableTMHMMTMhelixcoord: 179..201
NoneNo IPR availableTMHMMTMhelixcoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 32..54
NoneNo IPR availableTMHMMTMhelixcoord: 88..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1240contigE-fasciculatus_F_contig1240:11012..14589 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1240.1850.1mRNA_E-fasciculatus_F_contig1240.1850.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1240 8614..16769 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1240.1850.1 ID=prot_E-fasciculatus_F_contig1240.1850.1|Name=mRNA_E-fasciculatus_F_contig1240.1850.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=224bp
MSFRSRQTEMSREEDSAATLVRPKHAAISCSHFWANALVVTGLSSVVVGV
IIFTEWRGVGSFWVGAVAMAAGTSGIYVTQGEPSGGLATVFYALLSLVTL
AASIVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEEACVCWEPDGTD
VCSDAGSVRYCVPYGGDSCSDIKDSENFLLGSFIILVIIAFCSFCSLVVA
VNTCWYCKRTIVVESSEQPTGYR*
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