mRNA_E-fasciculatus_F_contig124.1848.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig124.1848.1
Unique NamemRNA_E-fasciculatus_F_contig124.1848.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: D7FQ21_ECTSI (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ21_ECTSI)

HSP 1 Score: 482 bits (1240), Expect = 1.300e-169
Identity = 251/270 (92.96%), Postives = 262/270 (97.04%), Query Frame = 1 
Query:    1 MTKTLPVMAALLALLSRTGAFVSSPGLSKSSFAT-NRGTSDAVRSRRQGASYRPRSSAAADAVVMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLRPDISRINRLAREREMAS 807
            MTKTLPVMAAL ALLSRTGAFVSSPGLSKSSFAT +RGTSDAVRSRRQG +YRP SSAAA   VMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGR+GHAEVVLLEYDP VVTFDEL+EVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMA+ASREAKQAKINAEAVLG+V+GAVTGKKEGEN+VNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLRPDISRINRL+R+RE+AS
Sbjct:    1 MTKTLPVMAALFALLSRTGAFVSSPGLSKSSFATTDRGTSDAVRSRRQGVAYRPCSSAAA--TVMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAVASREAKQAKINAEAVLGRVVGAVTGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLRPDISRINRLSRDREVAS 268
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: A0A643JSG6_9EURY (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Haloferax TaxID=2251 RepID=A0A643JSG6_9EURY)

HSP 1 Score: 193 bits (490), Expect = 2.810e-57
Identity = 95/189 (50.26%), Postives = 120/189 (63.49%), Query Frame = 1 
Query:  190 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLR 756
            M   K A FGGGCFWCIEA FK LDG+S V SGYAGG++ENPTY  VCSG +GHAEV+ +EYDPAVV +DEL+EVF+  HDPTQ NRQG D+GT+YRSI+L  D++Q   A A  EA     + + V                     T ++ L+ F+EAE  HQDY+ +NP   YC  +   K+ K+R
Sbjct:    1 MVASKSATFGGGCFWCIEAAFKELDGISSVTSGYAGGSVENPTYEQVCSGNTGHAEVIQVEYDPAVVGYDELLEVFFAVHDPTQLNRQGPDVGTQYRSIVLYHDDDQQRQAAAYIEALDESYDDDVV---------------------TELEPLETFYEAETYHQDYFEKNPNDAYCRFHASPKIEKVR 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: I3RAV4_HALMT (Peptide methionine sulfoxide reductase MsrA n=17 Tax=Haloferax TaxID=2251 RepID=I3RAV4_HALMT)

HSP 1 Score: 189 bits (480), Expect = 8.890e-56
Identity = 93/189 (49.21%), Postives = 121/189 (64.02%), Query Frame = 1 
Query:  190 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLR 756
            M + + A FGGGCFWC+EA FK LDG+S+V SGYAGG +E+PTY  VCSG +GHAEVV +EYDPA+V +DEL+EVF+  HDPTQ NRQG D+GT+YRSI+L  DE+Q   A A  E    + + E V                     T +  L+ F+EAE+ HQDY+ +NP   YC  +   K+ K+R
Sbjct:    1 MGSTQTATFGGGCFWCVEAAFKELDGISEVTSGYAGGEVESPTYEQVCSGNTGHAEVVQIEYDPAIVGYDELLEVFFAVHDPTQLNRQGPDVGTQYRSIVLTHDEDQKRQAAAYIEVLDEEYDDEVV---------------------TELAPLETFYEAEQYHQDYFEKNPNDAYCQFHASPKVEKVR 168
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BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: A0A650A413_9EURY (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Halorhabdus sp. CBA1104 TaxID=1380432 RepID=A0A650A413_9EURY)

HSP 1 Score: 189 bits (479), Expect = 1.180e-55
Identity = 93/183 (50.82%), Postives = 120/183 (65.57%), Query Frame = 1 
Query:  208 AVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLR 756
            A FGGGCFWC EA  K LDG+  V SGYAGG +ENPTYR+VCSG +GHAEVV +EYD AV+++DEL+EVF+ THDPTQ NRQG D+GT+YRSI+L  D++Q ++A A  EA  A+ + E V                     T +  L  F+ AE+ HQDY+ +NP   YC M+   K+ K+R
Sbjct:    4 ATFGGGCFWCTEAAMKELDGIESVTSGYAGGHVENPTYREVCSGDTGHAEVVQVEYDSAVISYDELLEVFFATHDPTQLNRQGPDVGTQYRSIVLYHDDDQRELAAAYIEALDAEYDEEVV---------------------TELTELDEFYRAEEKHQDYFEKNPTDAYCQMHAAPKVEKVR 165
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: A0A6A8GB24_9EURY (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Haloferax TaxID=2251 RepID=A0A6A8GB24_9EURY)

HSP 1 Score: 188 bits (477), Expect = 2.500e-55
Identity = 92/189 (48.68%), Postives = 122/189 (64.55%), Query Frame = 1 
Query:  190 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLR 756
            M T + A FGGGCFWCIEA FK LDG++ V SGYAGG++ENPTY+ VCSG +GHAEVV LE+DP VV +DEL++VF+  HDPTQ NRQG D+GT+YRS+IL  D++Q  +A A  EA     + + V                     T +  ++ F+EAE+ HQDY+ +NP   YC  +   K+ K+R
Sbjct:    1 MGTTQTATFGGGCFWCIEAAFKELDGITDVTSGYAGGSVENPTYKQVCSGDTGHAEVVQLEFDPDVVAYDELLDVFFAVHDPTQLNRQGPDVGTQYRSVILYHDDDQRQVAEAYIEAVDESYDDDVV---------------------TELTSIETFYEAEEYHQDYFEKNPNDAYCQFHASPKVEKVR 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: A0A0W1SKA7_9EURY (Peptide methionine sulfoxide reductase MsrA n=3 Tax=Haloferax TaxID=2251 RepID=A0A0W1SKA7_9EURY)

HSP 1 Score: 187 bits (474), Expect = 7.050e-55
Identity = 92/189 (48.68%), Postives = 120/189 (63.49%), Query Frame = 1 
Query:  190 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLR 756
            M + + A FGGGCFWCIEA FK LDG+S V SGYAGGT+ENPTY  VCSG +GHAEV+ +EYDP+VV +DEL++VF+  HDPTQ NRQG D+GT+YRSI+L  D++Q  +A A  EA     + + V                     T +   + F+EAE  HQDY+ +NP   YC  +   K+ K+R
Sbjct:    1 MESSQTATFGGGCFWCIEAAFKELDGISDVTSGYAGGTVENPTYEQVCSGTTGHAEVIQVEYDPSVVDYDELLDVFFAVHDPTQLNRQGPDVGTQYRSIVLYHDDDQRRLAEAYVEALDDSYDDDVV---------------------TELAPFETFYEAEAYHQDYFEKNPNDAYCQFHASPKIEKVR 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: A0A0K1IZ51_HALGI (Peptide methionine sulfoxide reductase MsrA n=5 Tax=Haloferax TaxID=2251 RepID=A0A0K1IZ51_HALGI)

HSP 1 Score: 186 bits (473), Expect = 9.960e-55
Identity = 93/189 (49.21%), Postives = 120/189 (63.49%), Query Frame = 1 
Query:  190 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLR 756
            M + + A FGGGCFWC+EA FK LDG+S+V SGYAGG  ENP+Y  VCSG +GHAEVV +EYDPA V +DEL+EVF+  HDPTQ NRQG D+GT+YRSI+L  D+EQ   A A  EA   + + + V                     T +  L+ F+EAE+ HQDY+ +NP   YC  +   K+ K+R
Sbjct:    1 MGSTQTATFGGGCFWCVEAAFKELDGISEVTSGYAGGKTENPSYEQVCSGNTGHAEVVQVEYDPAAVGYDELLEVFFAVHDPTQLNRQGPDVGTQYRSIVLYHDDEQERQASAYVEALDEEYDDKVV---------------------TELVPLETFYEAEEYHQDYFEKNPNDAYCQFHASPKIEKVR 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: G2MGR9_9EURY (Peptide methionine sulfoxide reductase MsrA n=1 Tax=halophilic archaeon DL31 TaxID=756883 RepID=G2MGR9_9EURY)

HSP 1 Score: 186 bits (473), Expect = 9.960e-55
Identity = 91/184 (49.46%), Postives = 123/184 (66.85%), Query Frame = 1 
Query:  205 KAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLR 756
            KA FGGGCFWCIEA  + LDGV  V SGYAGG  ENPTYR VCSG++GHAEVV LEY+P  ++++EL+EVF+  HDPTQ NRQG D+G++YRSI+L  D+EQL++A +  EA                A +G  + +    + T I+ L+ F+ AE+ HQDY+ +NP   YC M+   K+ K++
Sbjct:    4 KATFGGGCFWCIEAALEPLDGVESVTSGYAGGDTENPTYRAVCSGKTGHAEVVQLEYEPETISYEELLEVFFTIHDPTQLNRQGPDVGSQYRSIVLAHDDEQLELAQSFVEAL---------------AESGGYDDD----VVTEIERLETFYRAEEPHQDYFKKNPNDAYCSMHAQPKIEKVK 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: A0A2V6FFJ1_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6FFJ1_9BACT)

HSP 1 Score: 186 bits (473), Expect = 9.960e-55
Identity = 92/188 (48.94%), Postives = 124/188 (65.96%), Query Frame = 1 
Query:  208 AVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLRPDISR 771
            A  GGGCFWC+EAVF+ L+GV  V SGYAGGT ENPTY++VC G +GHAEV+ +E+DP  +++++L+EVFW+ HDPT  NRQG D+GT+YRSIIL  +E Q   A  SR+A Q K              TG+        I T I  L  F++AE  HQDY+  +P +PYC + +G KL KL+P +++
Sbjct:   10 ATLGGGCFWCLEAVFERLEGVKSVTSGYAGGTKENPTYKEVCLGATGHAEVIQIEFDPQKISYEKLLEVFWQAHDPTTLNRQGADVGTQYRSIILYHNETQKKAAEESRQAAQWKS-------------TGR--------IVTEIVPLTKFYKAEDYHQDYFRNHPNAPYCAVVIGPKLEKLKPKLAK 176
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Match: UPI001FED1491 (peptide-methionine (S)-S-oxide reductase MsrA n=1 Tax=Fulvivirga aurantia TaxID=2529383 RepID=UPI001FED1491)

HSP 1 Score: 186 bits (473), Expect = 9.960e-55
Identity = 92/185 (49.73%), Postives = 119/185 (64.32%), Query Frame = 1 
Query:  202 KKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTGKKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLR 756
            KKA FG GCFWCIEAVF+ L+GV  VVSGY GG +++PTYR+VC GR+GHAEV  + YD ++++FDEL+EVFWKTHDPT  NRQG D+GT+YRS +   D+EQ + A    E+ + K+N        I                T I  L VF+EAE  HQDYY  NP  PYC + +  K+ K++
Sbjct:    3 KKATFGAGCFWCIEAVFQQLEGVKSVVSGYTGGKVKDPTYREVCGGRTGHAEVAQITYDESIISFDELLEVFWKTHDPTTLNRQGADVGTQYRSAVFYHDQEQKEKA----ESYKKKLNEAKAFDDPI---------------VTEIAPLTVFYEAETQHQDYYKNNPDQPYCAIVIRPKVEKVK 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig124.1848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ21_ECTSI1.300e-16992.96Peptide-methionine (S)-S-oxide reductase n=1 Tax=E... [more]
A0A643JSG6_9EURY2.810e-5750.26Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
I3RAV4_HALMT8.890e-5649.21Peptide methionine sulfoxide reductase MsrA n=17 T... [more]
A0A650A413_9EURY1.180e-5550.82Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A6A8GB24_9EURY2.500e-5548.68Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A0W1SKA7_9EURY7.050e-5548.68Peptide methionine sulfoxide reductase MsrA n=3 Ta... [more]
A0A0K1IZ51_HALGI9.960e-5549.21Peptide methionine sulfoxide reductase MsrA n=5 Ta... [more]
G2MGR9_9EURY9.960e-5549.46Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A2V6FFJ1_9BACT9.960e-5548.94Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
UPI001FED14919.960e-5549.73peptide-methionine (S)-S-oxide reductase MsrA n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig124contigE-fasciculatus_F_contig124:35389..38940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score188.3
Seed ortholog evalue4.5e-45
Seed eggNOG ortholog756883.Halar_2828
Preferred namemsrA
KEGG koko:K07304
EggNOG free text desc.Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
EggNOG OGsCOG0225@1,arCOG02816@2157
EC1.8.4.11
COG Functional cat.O
Best tax levelArchaea
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-01_007800.1
Exons6
Model size1074
Cds size810
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927746.4813015-UTR-E-fasciculatus_F_contig124:35388..356521622927746.4813015-UTR-E-fasciculatus_F_contig124:35388..35652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig124 35389..35652 -
1695995677.202164-UTR-E-fasciculatus_F_contig124:35388..356521695995677.202164-UTR-E-fasciculatus_F_contig124:35388..35652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig124 35389..35652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927746.49442-CDS-E-fasciculatus_F_contig124:35652..357871622927746.49442-CDS-E-fasciculatus_F_contig124:35652..35787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 35653..35787 -
1695995677.2145877-CDS-E-fasciculatus_F_contig124:35652..357871695995677.2145877-CDS-E-fasciculatus_F_contig124:35652..35787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 35653..35787 -
1622927746.509078-CDS-E-fasciculatus_F_contig124:36410..365391622927746.509078-CDS-E-fasciculatus_F_contig124:36410..36539Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 36411..36539 -
1695995677.2550483-CDS-E-fasciculatus_F_contig124:36410..365391695995677.2550483-CDS-E-fasciculatus_F_contig124:36410..36539Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 36411..36539 -
1622927746.5209653-CDS-E-fasciculatus_F_contig124:37170..372751622927746.5209653-CDS-E-fasciculatus_F_contig124:37170..37275Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 37171..37275 -
1695995677.2663414-CDS-E-fasciculatus_F_contig124:37170..372751695995677.2663414-CDS-E-fasciculatus_F_contig124:37170..37275Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 37171..37275 -
1622927746.5309405-CDS-E-fasciculatus_F_contig124:37486..376031622927746.5309405-CDS-E-fasciculatus_F_contig124:37486..37603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 37487..37603 -
1695995677.279402-CDS-E-fasciculatus_F_contig124:37486..376031695995677.279402-CDS-E-fasciculatus_F_contig124:37486..37603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 37487..37603 -
1622927746.5402453-CDS-E-fasciculatus_F_contig124:37844..379351622927746.5402453-CDS-E-fasciculatus_F_contig124:37844..37935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 37845..37935 -
1695995677.290622-CDS-E-fasciculatus_F_contig124:37844..379351695995677.290622-CDS-E-fasciculatus_F_contig124:37844..37935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 37845..37935 -
1622927746.5528922-CDS-E-fasciculatus_F_contig124:38707..389401622927746.5528922-CDS-E-fasciculatus_F_contig124:38707..38940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 38708..38940 -
1695995677.3056936-CDS-E-fasciculatus_F_contig124:38707..389401695995677.3056936-CDS-E-fasciculatus_F_contig124:38707..38940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 38708..38940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig124.1848.1prot_E-fasciculatus_F_contig124.1848.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig124 35653..38940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig124.1848.1

>prot_E-fasciculatus_F_contig124.1848.1 ID=prot_E-fasciculatus_F_contig124.1848.1|Name=mRNA_E-fasciculatus_F_contig124.1848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=270bp
MTKTLPVMAALLALLSRTGAFVSSPGLSKSSFATNRGTSDAVRSRRQGAS
YRPRSSAAADAVVMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGG
TMENPTYRDVCSGRSGHAEVVLLEYDPAVVTFDELMEVFWKTHDPTQGNR
QGMDIGTEYRSIILCEDEEQLDMAMASREAKQAKINAEAVLGKVIGAVTG
KKEGENVVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVK
LRPDISRINRLAREREMAS*
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mRNA from alignment at E-fasciculatus_F_contig124:35389..38940-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig124.1848.1 ID=mRNA_E-fasciculatus_F_contig124.1848.1|Name=mRNA_E-fasciculatus_F_contig124.1848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig124:35389..38940- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGAAGACTCTTCCGGTGATGGCGGCTCTTCTCGCCCTGCTCTCTCG
CACCGGGGCCTTCGTGTCCTCGCCAGGGTTGAGCAAGAGCAGCTTCGCCA
CCAACCGCGGCACCAGCGACGCGGTTCGATCACGAAGACAGGGGGCATCG
TACAGGCCCCGCAGCAGTGCCGCCGCTGATGCCGTCGTCATGGCGACCGA
GAAGAAGGCCGTCTTCGGTGGAGGGTGCTTCTGGTGAGCAGGGTGCTGTC
TGAGTGTCTAGATGTAGGAAAGGTGCCCATCGCTTAATGTATAGAGTACC
AGTCATGAGTTGATCTCGGGGTCGCAACCAAGTCTGTCTGTTGTGACTCT
TTTGTCTCCGGGAAACATGTTTCTCCAACCTGCTGCGGTCCTACTGCTGT
AACTGCAGAGACAGCATTTTTTTTTTCCTGGCCGTCCTGTTGAGGAGCCG
TCGAGAAAAGTCATATATAGGGAGGCCTTGAGGTGTCTTTACTGCATCCG
ACGTCAAATCTTTCTCACGTTTTGGGATAATAGATGGCACAAGGGAGTCG
AGAGAGATAAAGGGAGAGAGTCAGCGAGCCCTCTGTCCTAATAGTGTGAC
CTACATATACAACCCAGGGCAGGAGGTTTCAACACCTGAGAGGGACTCAA
GGTTGTGGGTTGAAATCCGTCCAGTGAAGCTCCCGTGGCGCTACAGAGCA
GGAACAATGATGTTTTGCGGCTTTTCCCGCAGCAGGCAATCCTGTCACTT
GCCCCGATCATGACCATTCTGCTGCGCTTACGCGGGGTTTTTTACATCTC
TGTTGACATGGCGTCGAAATCGCACTCGCTCCTCGCATTGCTATCGTACA
TGGGGTGTGCACACATCCATTGCCACAGAAACACATATCGATCGTTCGTA
GTTCTATGTAATCCTGTGGCGTAATGATGTCCTGGCCGTCTTGCCATTAC
TGTTTTCAGGATCGCTCCCGCCCTCTTGATTCGGATCCGCGATTTTGCGC
GAAAGGTGTATCGAAGCTGTGTTCAAGACACTCGATGGAGTTTCGAAGGT
GGTGTCGGGATACGCGGGCGGGACCATGGAAAACCCCACGTATCGGGTAA
GTGCCGCTACACACGGACCCGTTAGCTGAGCACCACTCGATGCTTGCACG
AAGTAATCGAGAATTTGCTATTTTGTACTTGGTAGATGTGCACTTCCTTG
TACTCGCCTGTTCCACGTCGGAGGTGAAGACGGAAGTGTCGCGCTGAAGC
CAATTTATATGCACCGGAAGACGTGAAATAGGTTGGTCATCTTGCCTTCG
TTGCATTCCGTGCGTTTTTGAAATATCCCGCCCGCAGGACGTTTGTTCGG
GACGATCGGGGCACGCGGAAGTAGTGCTGCTGGAGTACGACCCCGCGGTC
GTTACGTTCGACGAGCTGATGGAGGTGTTTTGGAAGACCCACGACCCTAC
ACAGGTACTAGATTTAGTGCGGCTTTAGCGTGTCACTGCTCGGCGCCCCT
TCTGCTTAGCTTTTCAGCGTGCTTGTGTAGGCCTCTTGAAAGAGCCACTA
CCCCCACAGGTGAGTGATCCCACGCGACGTGCATAGTTTTCTTCTGTTTC
GCCATCGGACCACTCACGCCGACTCCCTCTCGATTTTTCCTTGTTTTTGG
TTGACGTGTTGGCAGGGAAACCGACAGGGAATGGACATTGGCACCGAGTA
CCGAAGCATAATCTTATGCGAGGACGAGGAGCAGCTGGATATGGCCATGG
CATCGCGAGAAGCAAAGCAGGTATTTTGACACACTGCCGTGCTCGGCAGA
TAATTAACACATGGATATCTACGACAGGGTGGCCAGCGGGAATACGGAAA
CAACTGCGCAAATCCTAAGGGATCTTTGTTTGTGCTCTTGCGTAAAATCA
GCTCCCCGAGAGGAAGCGAGAAAGCTTCCGGGCTACTGCGCGTTTTTACC
TCGAAGGTCGCTAGTGCTGAGAACGTCCCCGACATCATTGACGAAGCAAG
TGCAATGGTTGTTAGGTTTTGAACACAGACTCATTGCTTGTTCACTCGAA
CACAGAATGTCGCGGATTCGTCCTCTTTTATCATGTGTGGTGTTACCCTG
TGCATCCCAACAAACACAAATCGAGCTGGAGCATCTGCCCGGTGCTTCCT
TACAGAGATGAAAACCTGTATCGCAAGTACGTTGTTGAGGATAGCGCTTG
AAAGCGAAACTGGCGCTGTCTTGGTGTTGCTGGTAGCTTGCCGTTCTTGT
TTGCCGAAGTGGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGTTGATGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TTGCCGTTCTGGTTATTTCAATCCCCTATTTTATTGTCGGCACAACAACA
GGCAAAAATCAACGCCGAGGCGGTATTGGGGAAGGTGATAGGTGCTGTCA
CGGGCAAGAAGGAGGGTGAAAACGTCGTCAACATCACGACGACGATCGAC
CTGCTGCAAGTCTTCTGGGAGGCCGAAAAGGCAAGGAAAAAGTCGAAGAC
CCGAAAAGCAGACCGCTTGCATTAAATATTTGCTCGTGCAGAGGAAGATC
CCGCAAGGCGAAGCGTTCTTTGATTCAATAACCGCCGCCCGTAGAGCGAA
AGCCGAGTGGACGTCATCTGATATTGCACCCAACCTGCTGTTGCTGTCGA
ACTCCTTGCTCGGCATAGAGATACAACAATGTTTTCTTCTATTTTTTACT
TACCGCACCGACACCGGGGGGTGGGGTTGGGAAAGGCAGAGGGCGAGAGG
GTGGCATTAGCACCGCCTTGAACTGCACCTCTTCCTGGAACGCTGTTTCT
TCCGTGTGATAAAGCCGCTCTGATTGCGTCTTCCGACAAACAGAGCCTCC
ATTCCACACCGGATTTTCTGGTGTGCTCCGGTCGTTTCTATTTTCTACTG
CCGACCTGTTGAGCACGGCGGTTGAACTTAGCAACCTCACCCGCTTGCTT
CCTATGCAGCCTCCTCTCCTGAACTGCTGTAACAATACGTATGGTATCGC
CCCAGGTGATGGTCTACAACGCACCCCCTCTCTCTCCGTCTCTCGTTCCT
TCTCTTCTCTGGATCCCTTTGCTTGGCCTTGTCTGGATGTGATGTGATGA
CAGGTCCACCAAGACTACTACGCCAGAAACCCTCTGTCGCCCTACTGCAT
CATGAACGTTGGGACAAAGCTCGTCAAGCTGAGACCCGACATCAGCAGGA
TTAATCGGTTAGCGCGAGAGCGCGAGATGGCTTCGTGATCGGGTCGGTCG
AGAAGGGCGGGAAACAGGGCTTCCTGTTTGGTCGCGTTTCTGTGTCAAAG
ATCGTCTTGTCACTTCGACTTTGAGTGGCGAACAAATCTTCTGTGGTACA
ACGTTTGCACTCCGAAATTGTTGGGTTTTCGTGCATCGATTTCGTCGGCT
GCTGTTGTGTGTTCGGCGAATCGTGTGTGATGCACACCTGTAGGTAATAC
GGTTCCCACCGTCTTGGGTGGCGGACGACATACATACACACATATGGTTC
GG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig124:35389..38940-

>mRNA_E-fasciculatus_F_contig124.1848.1 ID=mRNA_E-fasciculatus_F_contig124.1848.1|Name=mRNA_E-fasciculatus_F_contig124.1848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1620bp|location=Sequence derived from alignment at E-fasciculatus_F_contig124:35389..38940- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGAAGACTCTTCCGGTGATGGCGGCTCTTCTCGCCCTGCTCTCTCG
CACCGGGGCCTTCGTGTCCTCGCCAGGGTTGAGCAAGAGCAGCTTCGCCA
CCAACCGCGGCACCAGCGACGCGGTTCGATCACGAAGACAGGGGGCATCG
TACAGGCCCCGCAGCAGTGCCGCCGCTGATGCCGTCGTCATGGCGACCGA
GAAGAAGGCCGTCTTCGGTGGAGGGTGCTTCTGATGACGAAGACTCTTCC
GGTGATGGCGGCTCTTCTCGCCCTGCTCTCTCGCACCGGGGCCTTCGTGT
CCTCGCCAGGGTTGAGCAAGAGCAGCTTCGCCACCAACCGCGGCACCAGC
GACGCGGTTCGATCACGAAGACAGGGGGCATCGTACAGGCCCCGCAGCAG
TGCCGCCGCTGATGCCGTCGTCATGGCGACCGAGAAGAAGGCCGTCTTCG
GTGGAGGGTGCTTCTGGTGTATCGAAGCTGTGTTCAAGACACTCGATGGA
GTTTCGAAGGTGGTGTCGGGATACGCGGGCGGGACCATGGAAAACCCCAC
GTATCGGGTGTATCGAAGCTGTGTTCAAGACACTCGATGGAGTTTCGAAG
GTGGTGTCGGGATACGCGGGCGGGACCATGGAAAACCCCACGTATCGGGA
CGTTTGTTCGGGACGATCGGGGCACGCGGAAGTAGTGCTGCTGGAGTACG
ACCCCGCGGTCGTTACGTTCGACGAGCTGATGGAGGTGTTTTGGAAGACC
CACGACCCTACACAGGACGTTTGTTCGGGACGATCGGGGCACGCGGAAGT
AGTGCTGCTGGAGTACGACCCCGCGGTCGTTACGTTCGACGAGCTGATGG
AGGTGTTTTGGAAGACCCACGACCCTACACAGGGAAACCGACAGGGAATG
GACATTGGCACCGAGTACCGAAGCATAATCTTATGCGAGGACGAGGAGCA
GCTGGATATGGCCATGGCATCGCGAGAAGCAAAGCAGGGAAACCGACAGG
GAATGGACATTGGCACCGAGTACCGAAGCATAATCTTATGCGAGGACGAG
GAGCAGCTGGATATGGCCATGGCATCGCGAGAAGCAAAGCAGGCAAAAAT
CAACGCCGAGGCGGTATTGGGGAAGGTGATAGGTGCTGTCACGGGCAAGA
AGGAGGGTGAAAACGTCGTCAACATCACGACGACGATCGACCTGCTGCAA
GTCTTCTGGGAGGCCGAAAAGGCAAAAATCAACGCCGAGGCGGTATTGGG
GAAGGTGATAGGTGCTGTCACGGGCAAGAAGGAGGGTGAAAACGTCGTCA
ACATCACGACGACGATCGACCTGCTGCAAGTCTTCTGGGAGGCCGAAAAG
GTCCACCAAGACTACTACGCCAGAAACCCTCTGTCGCCCTACTGCATCAT
GAACGTTGGGACAAAGCTCGTCAAGCTGAGACCCGACATCAGCAGGATTA
ATCGGTTAGCGCGAGAGCGCGAGATGGCTTCGTGAGTCCACCAAGACTAC
TACGCCAGAAACCCTCTGTCGCCCTACTGCATCATGAACGTTGGGACAAA
GCTCGTCAAGCTGAGACCCGACATCAGCAGGATTAATCGGTTAGCGCGAG
AGCGCGAGATGGCTTCGTGA
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