mRNA_E-fasciculatus_F_contig124.1843.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig124.1843.1
Unique NamemRNA_E-fasciculatus_F_contig124.1843.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1843.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 2.490e-73
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 1 
Query:    1 MGEVERPGPKGADTGDAGELMAKNPFYSLLGDCYTIVASIKTFRFSDLLSATMKTSLTKKKRRNRSLYALSVLFLLAYLTVSASRTSHAHLSLLNIITLIVLDSCHYSIHRGSTYWSPGYGVMLMAAARVSI 396
            MGEVERPGPKG D GDAGELMAKNPFYSLLGDCYTIVASIKTFRFSDLLSATM+TSLTKKKRR+RSLYALSVLFLLAYLTVSA+RTSHAHLSLLNIITL++LDSCHYSIHRGSTYWSPGYGVMLMAAARVSI
Sbjct: 1887 MGEVERPGPKGDDAGDAGELMAKNPFYSLLGDCYTIVASIKTFRFSDLLSATMRTSLTKKKRRDRSLYALSVLFLLAYLTVSAARTSHAHLSLLNIITLVLLDSCHYSIHRGSTYWSPGYGVMLMAAARVSI 2018
[Close]
BLAST of mRNA_E-fasciculatus_F_contig124.1843.1 vs. uniprot
Match: A0A6H5KQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM6_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 5.800e-73
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 1 
Query:    1 MGEVERPGPKGADTGDAGELMAKNPFYSLLGDCYTIVASIKTFRFSDLLSATMKTSLTKKKRRNRSLYALSVLFLLAYLTVSASRTSHAHLSLLNIITLIVLDSCHYSIHRGSTYWSPGYGVMLMAAARVSI 396
            MGEVERPGPK  D GDAGELMAKNPFYSLLGDCYTIVASI+TFRFSDLLSATM+TSLTKKKRRNRSLYALSVLFLLAYLTVSA+RTSHAHLSLLNIITL++LDSCHYSIHRGSTYWSPGYGVMLMAAARVSI
Sbjct:  187 MGEVERPGPKRDDAGDAGELMAKNPFYSLLGDCYTIVASIQTFRFSDLLSATMRTSLTKKKRRNRSLYALSVLFLLAYLTVSAARTSHAHLSLLNIITLVLLDSCHYSIHRGSTYWSPGYGVMLMAAARVSI 318
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig124.1843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ17_ECTSI2.490e-7394.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQM6_9PHAE5.800e-7393.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig124contigE-fasciculatus_F_contig124:1610..2597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.8
Seed ortholog evalue1.4e-63
Seed eggNOG ortholog2880.D7FQ17
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG0045@1,KOG0045@2759,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Hectar predicted targeting categorysignal anchor
Exons3
Model size397
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig124.1843.1prot_E-fasciculatus_F_contig124.1843.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig124 1610..2597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927745.7719393-CDS-E-fasciculatus_F_contig124:1609..17351622927745.7719393-CDS-E-fasciculatus_F_contig124:1609..1735Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 1610..1735 -
1695995676.797149-CDS-E-fasciculatus_F_contig124:1609..17351695995676.797149-CDS-E-fasciculatus_F_contig124:1609..1735Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 1610..1735 -
1622927745.7829337-CDS-E-fasciculatus_F_contig124:1930..20891622927745.7829337-CDS-E-fasciculatus_F_contig124:1930..2089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 1931..2089 -
1695995676.8151531-CDS-E-fasciculatus_F_contig124:1930..20891695995676.8151531-CDS-E-fasciculatus_F_contig124:1930..2089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 1931..2089 -
1622927745.7934408-CDS-E-fasciculatus_F_contig124:2486..25971622927745.7934408-CDS-E-fasciculatus_F_contig124:2486..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 2487..2597 -
1695995676.8268578-CDS-E-fasciculatus_F_contig124:2486..25971695995676.8268578-CDS-E-fasciculatus_F_contig124:2486..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig124 2487..2597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig124.1843.1

>prot_E-fasciculatus_F_contig124.1843.1 ID=prot_E-fasciculatus_F_contig124.1843.1|Name=mRNA_E-fasciculatus_F_contig124.1843.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=132bp
MGEVERPGPKGADTGDAGELMAKNPFYSLLGDCYTIVASIKTFRFSDLLS
ATMKTSLTKKKRRNRSLYALSVLFLLAYLTVSASRTSHAHLSLLNIITLI
VLDSCHYSIHRGSTYWSPGYGVMLMAAARVSI
back to top

mRNA from alignment at E-fasciculatus_F_contig124:1610..2597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig124.1843.1 ID=mRNA_E-fasciculatus_F_contig124.1843.1|Name=mRNA_E-fasciculatus_F_contig124.1843.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=988bp|location=Sequence derived from alignment at E-fasciculatus_F_contig124:1610..2597- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGAGGTGGAACGGCCAGGGCCGAAGGGGGCCGACACGGGCGATGC
GGGGGAGCTAATGGCGAAGAACCCCTTCTATTCTCTCCTCGGGGACTGCT
ACACGATCGTGGTGAGTGAGGTTAGGAGGAAACAACCGTTGGGGATACAT
GTTTGACTTCTTTTAGTATTCCAAGAACAACAGATAATGCTGTTAAGCAA
CGTAGAGCGCACCTCTACTCGACAATGTATCCGTTGCGAGTATTTGGTGG
TGGCGTTGGTGATCGCATCCTTGCGTGATATTCCCGACCGACCCATGACT
GCCTTCACCACCCTGTGGTTAAAGCCCCAAATGCCGTCCCTACAAATGGA
TTGCCGTTTGCGATAACCCGAGATGCCTGTCCGGTTCCAAAAGACGTCAT
CAATCTGTACACAGCTTGTTCATTCCTCTTGTTCGCGTTTAACCTGGATG
TCATCTCGACACTTTGGTGCTGCCGCTGCTGCTGTATCGCTCTGCGTTTT
TTGAACAGGCTTCCATAAAGACGTTCCGTTTCAGCGACCTGTTGTCGGCC
ACCATGAAGACCTCGCTCACCAAGAAGAAGCGGCGGAATAGATCCCTCTA
CGCGCTGTCCGTGCTGTTCCTGTTGGCGTATCTTACGGTGTCGGCTTCGA
GGACGTCGCACGCACACGTGAGAGAATGAGATGGCGACAGAGGAAGCGCG
ATCAACGGCTGAAAAGGTGTCAGACGGCACGAGTATTCAGGCTGTGACGC
ACCAACTGCTCTTCTACCCCCCCCCACCGAACCCTTACGTTCATAGCAAG
TGCTACCAACACCATATTCAACATATACTCTCCTCACCCCTCTGCGACTT
GCCAAACAACAGCTGTCGCTCCTCAACATCATCACCCTGATCGTCCTGGA
CAGCTGTCACTACAGCATCCACCGTGGGTCTACCTATTGGTCTCCCGGCT
ATGGCGTTATGCTCATGGCGGCCGCCCGGGTGTCCATC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig124:1610..2597-

>mRNA_E-fasciculatus_F_contig124.1843.1 ID=mRNA_E-fasciculatus_F_contig124.1843.1|Name=mRNA_E-fasciculatus_F_contig124.1843.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=792bp|location=Sequence derived from alignment at E-fasciculatus_F_contig124:1610..2597- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGAGGTGGAACGGCCAGGGCCGAAGGGGGCCGACACGGGCGATGC
GGGGGAGCTAATGGCGAAGAACCCCTTCTATTCTCTCCTCGGGGACTGCT
ACACGATCGTGATGGGCGAGGTGGAACGGCCAGGGCCGAAGGGGGCCGAC
ACGGGCGATGCGGGGGAGCTAATGGCGAAGAACCCCTTCTATTCTCTCCT
CGGGGACTGCTACACGATCGTGGCTTCCATAAAGACGTTCCGTTTCAGCG
ACCTGTTGTCGGCCACCATGAAGACCTCGCTCACCAAGAAGAAGCGGCGG
AATAGATCCCTCTACGCGCTGTCCGTGCTGTTCCTGTTGGCGTATCTTAC
GGTGTCGGCTTCGAGGACGTCGCACGCACACGCTTCCATAAAGACGTTCC
GTTTCAGCGACCTGTTGTCGGCCACCATGAAGACCTCGCTCACCAAGAAG
AAGCGGCGGAATAGATCCCTCTACGCGCTGTCCGTGCTGTTCCTGTTGGC
GTATCTTACGGTGTCGGCTTCGAGGACGTCGCACGCACACCTGTCGCTCC
TCAACATCATCACCCTGATCGTCCTGGACAGCTGTCACTACAGCATCCAC
CGTGGGTCTACCTATTGGTCTCCCGGCTATGGCGTTATGCTCATGGCGGC
CGCCCGGGTGTCCATCCTGTCGCTCCTCAACATCATCACCCTGATCGTCC
TGGACAGCTGTCACTACAGCATCCACCGTGGGTCTACCTATTGGTCTCCC
GGCTATGGCGTTATGCTCATGGCGGCCGCCCGGGTGTCCATC
back to top