prot_E-fasciculatus_F_contig1239.1840.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1239.1840.1
Unique Nameprot_E-fasciculatus_F_contig1239.1840.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length428
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1239.1840.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 571 bits (1472), Expect = 2.410e-201
Identity = 363/431 (84.22%), Postives = 371/431 (86.08%), Query Frame = 0 
Query:    1 MNFVGSNEWVSRRRARGGSFDAPAVRVNIVDRRTAGTASSGF--SSEREDEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETLYDFVASAGSRMAHMEILRALAPLLRQHVDSLDFSGAKVVGDSALLELANGCDSSLVQLXXXXXXXXXXXXLLATLLKCPGLKDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVAYIAYLPALEQLCLARCNVSDAAVVAIATGVCRQSLRWLDLTGTAITGAACTAAAVASLRGLQRLEYLALSSTSVSATSVAALGRDLRLPAFLPEAPKTRARSSRTLLLGSKWSETQLRSLPKKRAATTAA--ARGPAKTWRNSSTSVVCYERDGPSKAMRLIGAASRVSPSSSSPFCSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 427
            MNFV SNEWVSRRRARGGSFD+PAVRVNIVDRRT G ASSG    SERE EIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAET+YDFVASAGSRMAHMEILRALAP+LRQHV SLDFS AK+VGDSALLELANGCDSSLVQL            LLATLLKCPG+KDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SGVAYIAYLPALEQLCLARCNVSDAAVVAI TGVCRQSLRWLDLT TAI+     AAA ASLR LQRLE             VAAL RDLRLPAFLPEAPKTRARSSR LLLGSKWSETQLRSLPKKRAATTAA  A  PAK+WRNS  SV+CYERDGPSKAMRLIGAASRVS SSSS     PCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR
Sbjct:    1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRT-GPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTCTAIS-----AAAAASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSS-----PCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1239.1840.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD2_ECTSI2.410e-20184.22Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 137..162
e-value: 33.0
score: 10.5
coord: 215..238
e-value: 27.0
score: 11.2
coord: 163..188
e-value: 0.081
score: 22.0
coord: 270..294
e-value: 660.0
score: 0.3
coord: 189..214
e-value: 0.038
score: 23.1
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 189..212
e-value: 0.21
score: 11.7
coord: 138..156
e-value: 1.2
score: 9.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 98..299
e-value: 2.0E-31
score: 110.8
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 111..293
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 111..293
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 115..282

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1239contigE-fasciculatus_F_contig1239:15736..18524 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1239.1840.1mRNA_E-fasciculatus_F_contig1239.1840.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1239 14460..18910 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1239.1840.1 ID=prot_E-fasciculatus_F_contig1239.1840.1|Name=mRNA_E-fasciculatus_F_contig1239.1840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=428bp
MNFVGSNEWVSRRRARGGSFDAPAVRVNIVDRRTAGTASSGFSSEREDEI
PTLGILCLRSLESSLGKGLATFDLQDLPLGLAETLYDFVASAGSRMAHME
ILRALAPLLRQHVDSLDFSGAKVVGDSALLELANGCDSSLVQLDLSSCRF
ITDSALLATLLKCPGLKDLTLSGCRGITDETAYHLPHRCTKLTTLNLAGL
EGITASGVAYIAYLPALEQLCLARCNVSDAAVVAIATGVCRQSLRWLDLT
GTAITGAACTAAAVASLRGLQRLEYLALSSTSVSATSVAALGRDLRLPAF
LPEAPKTRARSSRTLLLGSKWSETQLRSLPKKRAATTAAARGPAKTWRNS
STSVVCYERDGPSKAMRLIGAASRVSPSSSSPFCSSPCADDLVEVGFRDD
GIEEGGRKLLLNLVQGIVRLWPAVPSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp