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Homology
BLAST of mRNA_E-fasciculatus_F_contig1239.1840.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI) HSP 1 Score: 573 bits (1476), Expect = 6.030e-195 Identity = 363/431 (84.22%), Postives = 371/431 (86.08%), Query Frame = 2
Query: 125 MNFVGSNEWVSRRRARGGSFDAPAVRVNIVDRRTAGTASSGF--SSEREDEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETLYDFVASAGSRMAHMEILRALAPLLRQHVDSLDFSGAKVVGDSALLELANGCDSSLVQLXXXXXXXXXXXXLLATLLKCPGLKDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVAYIAYLPALEQLCLARCNVSDAAVVAIATGVCRQSLRWLDLTGTAITGAACTAAAVASLRGLQRLEYLALSSTSVSATSVAALGRDLRLPAFLPEAPKTRARSSRTLLLGSKWSETQLRSLPKKRAATTAA--ARGPAKTWRNSSTSVVCYERDGPSKAMRLIGAASRVSPSSSSPFCSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 1405
MNFV SNEWVSRRRARGGSFD+PAVRVNIVDRRT G ASSG SERE EIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAET+YDFVASAGSRMAHMEILRALAP+LRQHV SLDFS AK+VGDSALLELANGCDSSLVQL LLATLLKCPG+KDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SGVAYIAYLPALEQLCLARCNVSDAAVVAI TGVCRQSLRWLDLT TAI+ AAA ASLR LQRLE VAAL RDLRLPAFLPEAPKTRARSSR LLLGSKWSETQLRSLPKKRAATTAA A PAK+WRNS SV+CYERDGPSKAMRLIGAASRVS SSSS PCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR
Sbjct: 1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRT-GPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTCTAIS-----AAAAASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSS-----PCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 579.7 |
| Seed ortholog evalue | 1.1e-162 |
| Seed eggNOG ortholog | 2880.D7FQD2 |
| KEGG ko | ko:K10268 |
| EggNOG free text desc. | modulation by host of viral RNA genome replication |
| EggNOG OGs | KOG4341@1,KOG4341@2759 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04121 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-01_006550.2 |
| Exons | 5 |
| Model size | 2684 |
| Cds size | 1284 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1239.1840.1 >prot_E-fasciculatus_F_contig1239.1840.1 ID=prot_E-fasciculatus_F_contig1239.1840.1|Name=mRNA_E-fasciculatus_F_contig1239.1840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=428bp
MNFVGSNEWVSRRRARGGSFDAPAVRVNIVDRRTAGTASSGFSSEREDEI
PTLGILCLRSLESSLGKGLATFDLQDLPLGLAETLYDFVASAGSRMAHME
ILRALAPLLRQHVDSLDFSGAKVVGDSALLELANGCDSSLVQLDLSSCRF
ITDSALLATLLKCPGLKDLTLSGCRGITDETAYHLPHRCTKLTTLNLAGL
EGITASGVAYIAYLPALEQLCLARCNVSDAAVVAIATGVCRQSLRWLDLT
GTAITGAACTAAAVASLRGLQRLEYLALSSTSVSATSVAALGRDLRLPAF
LPEAPKTRARSSRTLLLGSKWSETQLRSLPKKRAATTAAARGPAKTWRNS
STSVVCYERDGPSKAMRLIGAASRVSPSSSSPFCSSPCADDLVEVGFRDD
GIEEGGRKLLLNLVQGIVRLWPAVPSR* back to topmRNA from alignment at E-fasciculatus_F_contig1239:14460..18910- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1239.1840.1 ID=mRNA_E-fasciculatus_F_contig1239.1840.1|Name=mRNA_E-fasciculatus_F_contig1239.1840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4451bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1239:14460..18910- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTTCACATTTTCCACCTGCTGTCTTGCTGTCTTGCTGGGAGCACATCCA
GTATCAGATCCATTAGACTACGTTTAGATACGGCGGAAGTGCGAGTTGTG
GAAATGTGAGTGGTTTTCTGACCTTGCTGCTGTTCACATGTCCTTGAAGT
ACCATTCTTTGCGCTTGGTGGATGGTCACGATTTGTCTTTGAAGTGCCAG
ACGCCAGACTATCTACCAGCAGACGGTCGTATTGCCCAAAGGTTCAAGAG
TTGAACCAAAAGCAGCAGCTCAGAGCACACCGGCCAAAACAGGGTTTACG
ACTTTCTCTACGCGCCCCCTTTCCGCCCCCTGTCGCCTGAACCATTCGGC
GGGGGCTGCTGTGACAGATAAGGCACTGCCGCTTTGATGAATTTCGTGGG
GTCTAACGAGTGGGTTTCTCGCCGCCGTGCACGCGGCGGGTCTTTCGACG
CACCGGCCGTACGAGTCAACATCGTCGACCGCCGAACTGCTGGTACCGCA
AGCAGCGGCTTCAGCAGTGAACGCGAGGATGAGATCCCAACTCTGGGCAT
TCTTTGCCTGCGGAGCTTGGAATCGTCCCTCGGCAAGGGCCTCGCGACCT
TCGATCTTCAGGACCTTCCCCTGGGGCTGGCCGAGACTCTCTACGACTTT
GTTGCCTCTGCAGGTTCGCGGATGGCCCACATGGAAATCCTTCGAGCGCT
CGCCCCTCTATTGCGGCAGCACGTCGACTCCCTCGACTTCAGCGGGGCCA
AGGTCAGCTTGCCATCACGAGGCTGTTGTTGGCTCCGTACTATACGACAC
ATGCTGTGACGAATACCAAGTACACCACAAGAGTATATTGAGGCGGGCGG
CCTACAAATTGTAGCAATCCGGTAAGCAGGTTCACATGTTCGGAGAAGGT
CTCCAGTACAGTACCGAGCCCTCTAGTACTGCAGGAGTGTGTCCAGCGAT
TTTACCTGCACAGTACCGGGCACCGGCACTATTCAACCTGCGCTATAGAG
GGCCCAGTACTACTCTACTTAACTAAATCTGTGCTACTTGTATGCATGAC
AAGAACCTTGCGTGACACACACACAAACACATTGAGGCGACGGGCTGCAG
CATTCGTTTTTCGCTCGATGGAGCTACTACTACGGCACCGCGCAAAGTTG
CAGGCAAAGGAAGAATACTCTGCTGTGAACCATGCATATGTTTGTTTTGA
ATGAGTAACGTGTTAAGACTATTTAGTGTTCTGTAGGGAGCACAGACCGC
GCTAACGCGCTTGGCTGTGAAAAGAAGACGTTGTCGTACAGCGGATTAAT
CAAAGCGAACCAGCACGCGTTTTTTTCTACAAAGCAGTAGNNNNNNNNNN
NNNCACGAATGTCCTGTTGTTGTTGTTGTTGATGTTGACGTCTACTTGTG
ACAGGTCGTGGGGGACTCGGCCCTGCTAGAGCTGGCCAACGGGTGCGACT
CGTCGCTGGTTCAGCTTGACCTCAGCAGTTGTCGCTTCATCACGGACAGT
GCTCTCCTCGCGACGCTGCTCAAGTGCCCTGGTCTGAAGGATCTCACCCT
TTCGGGGTGCCGCGGTATCACTGATGAGGTATGCGAGTAGTACAGCTGCC
CGTGCCGCTGTTTGGGGCGGGTTAAGAACGTATCGGAGTAAGCATGTTTG
TTCACCATTCATCCATCTGTTGCAGGCGCCGTGCAGAAGGAGCCGAAACA
TTCCGTACCCAATCACACAGTCTGCCTGCGTAGCTGTTGAGACGTTTTGC
TGTAGCTTGTAGTACTGCAGCAAGACTTGCTCAACGACCGCCGATATTGT
TTTAGTTACAGCAGCACTGCCTGCTGTGCAACGTGGAATGAATCATCAGT
ACCGCTGTGTATTCGCGCTTCACGCAGGTCGGTCAAGTCGACTACTTACC
CCGTGCACGCGTGTCACCTTGAATACAAACTCAGCATGAGCATCGTCCAT
TGTTGTTTTTTTATCTCCGTCGTTTCGACTCAACTCATACCGCAGACTGC
CTACCACTTGCCACACCGATGCACGAAGCTGACAACGCTCAACTTGGCGG
GACTGGAAGGGATAACCGCAAGTGGCGTGGCCTACATTGCCTACCTTCCC
GCCCTCGAGCAGCTTTGCCTCGCGAGATGCAACGTGAGAGAGCGCGCCGG
GGTATCATTTAGTTCTCTTATCGTACCGTACGTCGAATGGCGAAGAAATA
AGCGATAGTTGTCGGTTCTCGGCTACCTCTTACGGCGAATTAGGAGGAAC
CGGAGGAGAGGGATGTTCTTCGGCGGGCGGGGCAGGGGGGCGGGCGTGCA
GCGACGTTTCCCGCCGTCGCTTTCCTTGGAGTATATCGTTTTGGGCAAGG
GGGCGGGTCTTCAGTTATGTAGAGCGCAAGGATTCCACGCGTTTCGTGGC
CTGCAACTATCTGCATGTATTCGTACAGCACAGCAGTGATGGGAGCATGA
GTCGGGTGTAGGCAATACGTACGTATACACATGCCAGCTGGTGTCTCTCA
ACACCCTTCGCCCTTGCTCCCCCCCTTAGCTTCCTCCTGCTCTCTGCCTA
CCCTCCCATCGCACAGCAGGTCAGCGACGCCGCCGTGGTCGCGATCGCGA
CCGGCGTGTGCCGGCAGTCCCTGAGGTGGCTGGACCTAACCGGCACGGCG
ATAACGGGCGCGGCATGCACGGCGGCAGCAGTGGCGTCCCTCCGGGGCCT
GCAGCGGCTGGAGTACCTCGCCCTGTCTTCGACGAGCGTGTCCGCCACGT
CCGTGGCGGCGCTCGGCCGCGACCTGCGCTTGCCTGCCTTCCTCCCGGAG
GCGCCGAAGACGAGGGCAAGGTCTAGCCGCACGCTTCTGCTGGGATCGAA
GTGGTCTGAAACGCAGCTCCGCAGCCTGCCGAAAAAACGGGCGGCGACGA
CGGCGGCGGCACGGGGCCCCGCCAAGACTTGGCGAAACAGCAGCACGTCG
GTCGTCTGCTACGAGCGTGACGGCCCGAGCAAGGCGATGCGACTCATCGG
CGCGGCTAGTCGGGTGTCCCCTTCTTCCTCCTCTCCCTTCTGCTCCTCTC
CCTGCGCGGACGATCTTGTAGAGGTGGGCTTCCGAGACGACGGCATCGAA
GAGGGCGGGCGGAAGCTGCTGCTGAACCTGGTGCAAGGCATCGTTAGGTT
GTGGCCGGCGGTCCCCTCTCGCTGAACAAAGTGCTGTCTGTGGATTAATT
TGAGGAAATACGTATCCTCGGTCGAAGTTTCAATCCACCAGCCAGAGCTC
GAGCACCCCGCCGGTAAGTTGTAGCCGTGCGGGTGACCTGTGTTTATGTT
TGGTTTTGTGCGTTACGTGTATGATATAGTGCCAAATACTTATGTATCGG
TGTTGTAGTTGTGCGACACCTCTCTCTGCTGTGACAACGAGGAGCAAAAA
AAATGATGGCCGCTTTCATCTTTTCTTGCGTATTTTTCTTCAAGCCAAGG
GAGAAGTCCATTGATATTTACCTTTTTCTACTTGAAACCTGACGCGATGT
ATGGGACAGCGCCTTGGCTGTACATAGGTTTTCGGGCTTTGCTTATATTG
CAAAACTGCTACTGTTTGCCATACCTGCCCTGTACAGCTCGCCATGCCGT
GGATTTATCCGGTGAAGGCTTCTCCGGGTGTCGAGAGACCTTGTTCCACA
TGTATGTATGAGTGCTGGTCGAAGACCGAAGGGTTATTAAGGCAGGAAAC
CGGTTTAATTGCTGCCTGAGGTATGGAGAGTGTTTCCCCCCATAAATTAC
CGTGTATGACGTTACGTCAATGAAGGAACGTGAAGTGTTTTTTACGAGAG
GTCAGCGCGGCAAGAGACACACTTCGCGATGATGTTTTTATTGACCGGTT
ACGTATGTACAGTATCTGGACGGGATTCCGTCGAAGAACGTGGTTGGGCG
TTCGTTGTGTTTGTGGTGATGGCCGCGCGTGGGGACCGTAGGTTGTGGAC
ATCTCACGTCGCCGACGGGTGCTTTCTGGCTGGTGACTTCAATAATTTGT
GTTTTATATATCGCCTCGCGTACACGTAACGCGCACATGCCACAGCTTTG
TTGGTAGATACACGTGTTTCAGTTTTGAAGGGCGGTGAAGTCGGGGCGGC
ACGCGAGCTACATCCTTCACACGTTATTGGCCAAGCAGACGGCGGCGGGT
TTGGTGCGCATGCGATGCTTTGTTGTGTAAGGTTGTCGCGATTTGGTGAA
AAACGCGGTTTCTGGCGTGCCTTCTTGTTTTGTACATGCTCGGCGAAGGC
TGGAACATGGTAGATGGATGTATTTTATACCTGACTGTAAATATGTTTTG
TTCTTGCGGTCTCCGCGTGGCTGTGATGGGTTCGGTCTCACCGAAAAGCC
TCTTGTTTACAAAGATGTAAGGTGTGGGCGGGTGTGGGGCGTTTGTCGGA
AGACCTGCATGTGTTGGCGTTGTGGTTTCAATCTGCGATCGACACGCGGC
C back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1239:14460..18910- >mRNA_E-fasciculatus_F_contig1239.1840.1 ID=mRNA_E-fasciculatus_F_contig1239.1840.1|Name=mRNA_E-fasciculatus_F_contig1239.1840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2568bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1239:14460..18910- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATTTCGTGGGGTCTAACGAGTGGGTTTCTCGCCGCCGTGCACGCGG
CGGGTCTTTCGACGCACCGGCCGTACGAGTCAACATCGTCGACCGCCGAA
CTGCTGGTACCGCAAGCAGCGGCTTCAGCAGTGAACGCGAGGATGAGATC
CCAACTCTGGGCATTCTTTGCCTGCGGAGCTTGGAATCGTCCCTCGGCAA
GGGCCTCGCGACCTTCGATCTTCAGGACCTTCCCCTGGGGCTGGCCGAGA
CTCTCTACGACTTTGTTGCCTCTGCAGGTTCGCGGATGGCCCACATGGAA
ATCCTTCGAGCGCTCGCCCCTCTATTGCGGCAGCACGTCGACTCCCTCGA
CTTCAGCGGGGCCAAGATGAATTTCGTGGGGTCTAACGAGTGGGTTTCTC
GCCGCCGTGCACGCGGCGGGTCTTTCGACGCACCGGCCGTACGAGTCAAC
ATCGTCGACCGCCGAACTGCTGGTACCGCAAGCAGCGGCTTCAGCAGTGA
ACGCGAGGATGAGATCCCAACTCTGGGCATTCTTTGCCTGCGGAGCTTGG
AATCGTCCCTCGGCAAGGGCCTCGCGACCTTCGATCTTCAGGACCTTCCC
CTGGGGCTGGCCGAGACTCTCTACGACTTTGTTGCCTCTGCAGGTTCGCG
GATGGCCCACATGGAAATCCTTCGAGCGCTCGCCCCTCTATTGCGGCAGC
ACGTCGACTCCCTCGACTTCAGCGGGGCCAAGGTCGTGGGGGACTCGGCC
CTGCTAGAGCTGGCCAACGGGTGCGACTCGTCGCTGGTTCAGCTTGACCT
CAGCAGTTGTCGCTTCATCACGGACAGTGCTCTCCTCGCGACGCTGCTCA
AGTGCCCTGGTCTGAAGGATCTCACCCTTTCGGGGTGCCGCGGTATCACT
GATGAGGTCGTGGGGGACTCGGCCCTGCTAGAGCTGGCCAACGGGTGCGA
CTCGTCGCTGGTTCAGCTTGACCTCAGCAGTTGTCGCTTCATCACGGACA
GTGCTCTCCTCGCGACGCTGCTCAAGTGCCCTGGTCTGAAGGATCTCACC
CTTTCGGGGTGCCGCGGTATCACTGATGAGACTGCCTACCACTTGCCACA
CCGATGCACGAAGCTGACAACGCTCAACTTGGCGGGACTGGAAGGGATAA
CCGCAAGTGGCGTGGCCTACATTGCCTACCTTCCCGCCCTCGAGCAGCTT
TGCCTCGCGAGATGCAACACTGCCTACCACTTGCCACACCGATGCACGAA
GCTGACAACGCTCAACTTGGCGGGACTGGAAGGGATAACCGCAAGTGGCG
TGGCCTACATTGCCTACCTTCCCGCCCTCGAGCAGCTTTGCCTCGCGAGA
TGCAACGTCAGCGACGCCGCCGTGGTCGCGATCGCGACCGGCGTGTGCCG
GCAGTCCCTGAGGTGGCTGGACCTAACCGGCACGGCGATAACGGGCGCGG
CATGCACGGCGGCAGCAGTGGCGTCCCTCCGGGGCCTGCAGCGGCTGGAG
TACCTCGCCCTGTCTTCGACGAGCGTGTCCGCCACGTCCGTGGCGGCGCT
CGGCCGCGACCTGCGCTTGCCTGCCTTCCTCCCGGAGGCGCCGAAGACGA
GGGCAAGGTCTAGCCGCACGCTTCTGCTGGGATCGAAGTGGTCTGAAACG
CAGCTCCGCAGCCTGCCGAAAAAACGGGCGGCGACGACGGCGGCGGCACG
GGGCCCCGCCAAGACTTGGCGAAACAGCAGCACGTCGGTCGTCTGCTACG
AGCGTGACGGCCCGAGCAAGGCGATGCGACTCATCGGCGCGGCTAGTCGG
GTGTCCCCTTCTTCCTCCTCTCCCTTCTGCTCCTCTCCCTGCGCGGACGA
TCTTGTAGAGGTGGGCTTCCGAGACGACGGCATCGAAGAGGGCGGGCGGA
AGCTGCTGCTGAACCTGGTGCAAGGCATCGTTAGGTTGTGGCCGGCGGTC
CCCTCTCGCTGAGTCAGCGACGCCGCCGTGGTCGCGATCGCGACCGGCGT
GTGCCGGCAGTCCCTGAGGTGGCTGGACCTAACCGGCACGGCGATAACGG
GCGCGGCATGCACGGCGGCAGCAGTGGCGTCCCTCCGGGGCCTGCAGCGG
CTGGAGTACCTCGCCCTGTCTTCGACGAGCGTGTCCGCCACGTCCGTGGC
GGCGCTCGGCCGCGACCTGCGCTTGCCTGCCTTCCTCCCGGAGGCGCCGA
AGACGAGGGCAAGGTCTAGCCGCACGCTTCTGCTGGGATCGAAGTGGTCT
GAAACGCAGCTCCGCAGCCTGCCGAAAAAACGGGCGGCGACGACGGCGGC
GGCACGGGGCCCCGCCAAGACTTGGCGAAACAGCAGCACGTCGGTCGTCT
GCTACGAGCGTGACGGCCCGAGCAAGGCGATGCGACTCATCGGCGCGGCT
AGTCGGGTGTCCCCTTCTTCCTCCTCTCCCTTCTGCTCCTCTCCCTGCGC
GGACGATCTTGTAGAGGTGGGCTTCCGAGACGACGGCATCGAAGAGGGCG
GGCGGAAGCTGCTGCTGAACCTGGTGCAAGGCATCGTTAGGTTGTGGCCG
GCGGTCCCCTCTCGCTGA back to top
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