mRNA_E-fasciculatus_F_contig1239.1839.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1239.1839.1 vs. uniprot
Match: D7FQD3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQD3_ECTSI) HSP 1 Score: 726 bits (1874), Expect = 1.450e-256 Identity = 457/504 (90.67%), Postives = 474/504 (94.05%), Query Frame = 1
Query: 19 MAAAAGRLRVSCGRGLWWALCARRPPSPAPSYIFTTSQPSCLHVGQI-RLSSVTRPPSELEHTD-AAAREAAEQGLRILRERSESLQQDDAVEAWRLLLKAACAETVPPDVYFALGNLHYTWGELLEFGKRAELGAEGAARAVVAEIKDLRKQAMKKRQLAPASFGSKGRAGKGPTKTARKSEGSASGKEERVLSDGAREAGGGPGAPPPEVDHPEAWEWYLKAALSGDTRAMVQLGDIALESRTQSAANAQHAEEWYRKAAAGDPPQPDACFQMARIHHEGIGLPCDPVRARELYDEALQAGSSAAAYFLGQRFHVGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAFFHGEDGFARDPRAAFRCYLASADDGHADASYCLGVMQYAMGDAEEAFRRYQTAAESGNVLAWRNLAAMYALGEGVARSEQMAKSILATFGDEIERREKEERGAAEDGEEKR 1524
MAA GRLRVSCGRGLWWAL ARRPP+PAPSYIFTTSQP CLH G RLSSVTRPPSE EHTD AAAREAAEQGLRILRERSESL+QDDAVEAWRLLLKAACAETVPPDVYFALGNLHY WGELLEFGKRAELGAEGAA+AVVAEIKDLRKQAMKKRQLAP SFGSKGRAGK PTKT R S+ SA G + RVLS GAREAGGG G PPEVD+PEAWEWYLKAALSGDTRAM+QLGDIALE++T+SA NAQHAEEWYRKAA G+PPQPDACFQMARIHHEGIG PCDP RARELYDEALQAGSSAAAYFLGQRFHVGDE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAFFHGEDGFARDPRAAFRCY ++ADDGHADASYCLGVMQYAMGDAEEAFRRYQTAAE+GNVLAWRNLAAMYALGEGVARSEQMAK+ILATFGDEIERREKEE+ AA+DGEEKR
Sbjct: 1 MAAVVGRLRVSCGRGLWWALHARRPPNPAPSYIFTTSQPGCLHAGHFSRLSSVTRPPSEHEHTDPAAAREAAEQGLRILRERSESLEQDDAVEAWRLLLKAACAETVPPDVYFALGNLHYIWGELLEFGKRAELGAEGAAKAVVAEIKDLRKQAMKKRQLAPGSFGSKGRAGKSPTKTTRMSDVSARGNDGRVLSVGAREAGGGRGTTPPEVDYPEAWEWYLKAALSGDTRAMMQLGDIALEAKTKSAGNAQHAEEWYRKAAVGNPPQPDACFQMARIHHEGIGAPCDPTRARELYDEALQAGSSAAAYFLGQRFHVGDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAFFHGEDGFARDPRAAFRCYSSAADDGHADASYCLGVMQYAMGDAEEAFRRYQTAAEAGNVLAWRNLAAMYALGEGVARSEQMAKNILATFGDEIERREKEEKRAAKDGEEKR 504
BLAST of mRNA_E-fasciculatus_F_contig1239.1839.1 vs. uniprot
Match: A0A835YR63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR63_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.650e-24 Identity = 109/277 (39.35%), Postives = 134/277 (48.38%), Query Frame = 1
Query: 727 IALESRTQSAANAQHAEEWYRKAAAGDPPQPDACFQMARIHHEGIGLPC-DPVRARELYDEALQAGSSAAAYFLGQRFHVGD-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAFFHGEDGFARDPRAAFRCYLASADDG-----------------HADASYCLGVMQY----AMGDAEEAFRRYQTAAESGNVLAWRNLAAMYALGEGVARSEQMAKSILATFGDEIERREKE 1488
+A++ +SAAN AE WY +AAAG PP PDA FQ+AR++HEG+G DPVRA ELY A GSSAA + LG VGD E XXXXXXXXXXXXXXXXXXXX G + G G R A + + HA+A+YC VM+Y D AF YQTAAE+G+VLAWR +A+M+ LGEGV R E A+ I+ G I + E+E
Sbjct: 1 MAMQDPGESAANTPFAEHWYLRAAAGAPPLPDALFQLARVYHEGLGPAGEDPVRALELYQRAAAEGSSAALFLLGHAHSVGDAELGLPRDARAALAYLQRSADIDEHPEAXXXXXXXXXXXXXXXXXXXXEGRYVELVARAAAAGSANALFAEGDLWRRGLAGRERSEEKALHWFELAXXXXXXXXXXXXXXXXXXXXXHAEAAYCAAVMRYHGWGCDKDLRAAFELYQTAAEAGHVLAWREVASMHMLGEGVPRCEATARHIMQVMGKAIHKAEQE 277
BLAST of mRNA_E-fasciculatus_F_contig1239.1839.1 vs. uniprot
Match: A0A7S3L9E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9E1_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.730e-13 Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 1180 GSAFFHGEDGFARDPRAAFRCYLASADDGHADASYCLGVMQYAMG----DAEEAFRRYQTAAESGNVLAWRNLAAMYALGEGVARSEQMAKSI 1446
G + +HGE+G+ R+ A +L +AD GHADA+ G M ++ D +AF YQ A E GN+ WRN+AA YA GEGVA+S +MAK I
Sbjct: 30 GHSLYHGENGYPRNLHLALGDFLKAADAGHADAAVSAGAMLHSGDGVPKDQNKAFELYQHAGELGNLEGWRNVAACYATGEGVAQSLEMAKHI 122
BLAST of mRNA_E-fasciculatus_F_contig1239.1839.1 vs. uniprot
Match: A0A6S8F6I7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8F6I7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.600e-7 Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 1
Query: 628 GAPPPEVDHPEAWEWYLKAALSGDTRAMVQLGDIAL---ESRTQSAANA------QHAEEWYRKAAAGDPPQPDACFQMARIHHEGI--GLPCDPVRARELYDEALQA-GSSAAAYFLGQRFHVGDE 972
G P E + A W+ AA G T AMVQLG++ L E+ + N + A +WY KAAA DPP PDA + + +++EG L DP R+ L A +A +F+G GDE
Sbjct: 217 GEPKLEKNEEAAIRWFSLAAKQGSTDAMVQLGNVLLHRVETEKRQFKNKDVRGKLKEALDWYEKAAAHDPPHPDALYNLGLLYYEGFHDSLEIDPARSFLLIKTAADVCNDPSALFFVGHIGLQGDE 343
BLAST of mRNA_E-fasciculatus_F_contig1239.1839.1 vs. uniprot
Match: A0A7S3PNW5_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PNW5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 3.830e-7 Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 1
Query: 628 GAPPPEVDHPEAWEWYLKAALSGDTRAMVQLGDIAL---ESRTQSAANA------QHAEEWYRKAAAGDPPQPDACFQMARIHHEGI--GLPCDPVRARELYDEALQA-GSSAAAYFLGQRFHVGDE 972
G P E + A W+ AA G T AMVQLG++ L E+ + N + A +WY KAAA DPP PDA + + +++EG L DP R+ L A +A +F+G GDE
Sbjct: 217 GEPKLEKNEEAAIRWFSLAAKQGSTDAMVQLGNVLLHRVETEKRQFKNKDVRGKLKEALDWYEKAAAHDPPHPDALYNLGLLYYEGFHDSLEIDPARSFLLIKTAADVCNDPSALFFVGHIGLQGDE 343 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1239.1839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1239.1839.1 >prot_E-fasciculatus_F_contig1239.1839.1 ID=prot_E-fasciculatus_F_contig1239.1839.1|Name=mRNA_E-fasciculatus_F_contig1239.1839.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=506bp MSAMAAAAGRLRVSCGRGLWWALCARRPPSPAPSYIFTTSQPSCLHVGQIback to top mRNA from alignment at E-fasciculatus_F_contig1239:10329..14468+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1239.1839.1 ID=mRNA_E-fasciculatus_F_contig1239.1839.1|Name=mRNA_E-fasciculatus_F_contig1239.1839.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1239:10329..14468+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1239:10329..14468+ >mRNA_E-fasciculatus_F_contig1239.1839.1 ID=mRNA_E-fasciculatus_F_contig1239.1839.1|Name=mRNA_E-fasciculatus_F_contig1239.1839.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3036bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1239:10329..14468+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |