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Homology
BLAST of mRNA_E-fasciculatus_F_contig12385.1837.1 vs. uniprot
Match: D7FRI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI8_ECTSI) HSP 1 Score: 154 bits (389), Expect = 2.220e-43 Identity = 79/90 (87.78%), Postives = 82/90 (91.11%), Query Frame = 1
Query: 1 FHESDDATQLSISFDIEVGYDVVHTDLTSPGTALGAGQRVNMPPDTSGRYLDLLFDLTSDQTIGVSEVEIFLDVDDPAEVVVATLPTIYT 270
FHESDDATQLSISFD+EVGYD VHTDLTSPGTALGAGQRVNMPPD SG YL LLFDLTSDQ I VSEVEI+LDVDDP +VVVATLPTI T
Sbjct: 61 FHESDDATQLSISFDVEVGYDTVHTDLTSPGTALGAGQRVNMPPDASGNYLHLLFDLTSDQAIDVSEVEIYLDVDDPDDVVVATLPTIST 150
BLAST of mRNA_E-fasciculatus_F_contig12385.1837.1 vs. uniprot
Match: A0A6H5L2E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E1_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 7.950e-18 Identity = 53/90 (58.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 FHESDDATQLSISFDIEVGYDVVHTDLTSPGTALGAGQRVNMPPDTSGRYLDLLFDLTSDQTIGVSEVEIFLDVDDPAEVVVATLPTIYT 270
FHESDDATQLS SFD++VGY VHTDLTSPGTALGAGQRV EI+LDVDDP VVVATLPTI T
Sbjct: 94 FHESDDATQLSNSFDVQVGYGTVHTDLTSPGTALGAGQRV----------------------------EIYLDVDDPDNVVVATLPTIST 155
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Galactose-binding domain-like |
| Ec32 ortholog | Ec-09_000110.1 |
| Exons | 6 |
| Model size | 831 |
| Cds size | 831 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12385.1837.1 >prot_E-fasciculatus_F_contig12385.1837.1 ID=prot_E-fasciculatus_F_contig12385.1837.1|Name=mRNA_E-fasciculatus_F_contig12385.1837.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=277bp
FHESDDATQLSISFDIEVGYDVVHTDLTSPGTALGAGQRVNMPPDTSGRY
LDLLFDLTSDQTIGVSEVEIFLDVDDPAEVVVATLPTIYTVNVDTVSNVV
ATASFWDLSTDAGCGEAGCDPRLAHDGHNNTVASSRWSCESSWDEDSAYY
FSNPQYCFLEFVFGDDDGLFTVSHVVIYVHESDDATKEAMTMDVYSSSSS
YSSSYDLVGSFVTVPGTQLGAGHRVNLNRPLASSLTVAPYLSAGQWVDIS
EVEIYVEVTQTEVFIPAAEAWNEGER* back to topmRNA from alignment at E-fasciculatus_F_contig12385:86..2773+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12385.1837.1 ID=mRNA_E-fasciculatus_F_contig12385.1837.1|Name=mRNA_E-fasciculatus_F_contig12385.1837.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2688bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12385:86..2773+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCACGAGAGTGACGACGCCACACAGCTATCGATTTCTTTCGACATTGA
GGTCGGGTACGACGTGGTGCACACGGACTTGACGTCGCCAGGGACCGCCC
TGGGCGCGGGACAGCGTGTGAACATGCCACCGGACACATCTGGAAGATAC
CTCGATCTGCTTTTCGACCTGACGAGCGATCAAACAATCGGTGTTAGCGA
GGTACTACTCTACATGGGGAGGAGAGCGGCTGTTGGTCACTCTCTCAGAA
CAACCTCAGCACGCACGATACGCTAAACAGACCGATTGGAAGAGCGCTGA
AGGCGCAGGATGTACACATGCTTTGGGTTGTGCCCCAAATGGTAACACGG
CTTGATGCCAACCTATCGGCTTGGCACAGAGACTCCCAGCGTTCAGTGTC
GTTTTGGTGAGCCTTGGGCCCTACATCCTGCACCGCGCGCGCACGCTCAC
GTACTGCTGCAGGTGGAAATCTTTCTAGACGTGGACGATCCCGCTGAAGT
GGTGGTTGCGACGCTTCCTACAATATATACCGGTGCGAGTTGCGACTGCA
CCGCCGTTGCGGGTGCTAGCCTACGTTGCTGTTTGGGTTGTGACCATATA
TTGTTTGAAGTGGTTGTGCTTGGTTTAAGGTGCTAGTCGTTGTTGAGAAG
CACCTTTCGTTGTTGAGACGCCGCGAGAGCCCTGACAAGGGAACGGCTCA
GCCATGCACTCGGTATGACCCCAATCGTCGCCATTCTGCCGCGTTTCCTG
TATTACACGCGAAACCTAGTCAACGTCGACACCGTCTCCAACGTCGTGGC
GACCGCAAGTTTCTGGGACTTGAGCACCGATGCAGGGTGCGGGGAAGCTG
GCTGCGATCCTAGGCTAGCACACGTGAGTGGGCCTTGACCGGGTGGCTAC
TATTCAACGGCGACGAGGCAGGACGCGTGGTCGCGATTAGCAGGGTGGAG
GTATCATTTCGATCATTGTTATGTCGCCCTTGACACGAACTTTAGCTCAG
TGGCACACGTTGCGTACCTTCTACATCTGGAAATCTGTGGATTGTTCACT
GGCAGCACTGATGTTCGCCGGCAATGAAACTGACCCGTCGTCCCACAGCG
CGTGTAGACTAACAGGTTCACAATTCATAGCTGCTCCCTACTCTCTCGTC
ACGGTTTCCGAGTGACCCTTCACCCTTTGATGGGTGACGGCATCAACGGC
AGGACGATCCCTCACCTTTGCGCTTCCTCTTCTTCCAGTGCCACGAAATC
CACACGTTCATGACATTTGGCATTAACTTCTGACAGACATTTTCAGCTGC
TCGATTCTCTCGGCCAGTGTCAGTACACCTTGGCTGCGCAGATGTTCGCC
AAAGAACCAACAAGCATGCTGTGACATTGAACGCGCCCTCTTCCTTCATA
CTGGCACCTCTTCATCCGGCTGTCAGGGTGATAGGAACATACCTTGTCGG
TACCTAAGGGGGCACAACATATTCGATCGTAGCTCTGGGGGAGAGTGATG
TGCCGAGGTTGGTATCTAACAACATCGAAGGTCGGATGGTGCCGTGCATA
TGAATACGCAAAACTCATCAACGTACATGCGCATACTCACGCCTTCACTG
CGTCGTGTCGACGCCGGCGCCTCCACAGGACGGTCACAATAACACGGTCG
CGTCCTCGAGGTGGTCGTGCGAGTCGAGTTGGGACGAGGATAGTGCTTAC
TATTTCTCGAACCCCCAATATTGCTTCCTGGAGTTCGTCTTCGGGGACGA
TGACGGCCTATTCACTGTTTCGCACGTGGTGATATGTGAGTTGTTGTCTT
CGATTTCGTGCGTAGGGCCGACTGACCCTGGCGAGCTCATCGTGCTTGTC
GAAGTGACGTGCGCTTGAGGGAGGACCTCTTCCGCCGCTGCAAGGTTTGA
TCATTCACCCGCCCACTGACGGCGCAGCCTTCTGCTTGTCGCGTTTAGAT
CGCACAACCTGGTCCACCGCAATGTCCCCTTGAGAGACGTGGTGTATGTG
CCATGCACCCATCACACCCTCCGGCCCTGCCCGTTTGCTTTCCGACGGCA
CACACTTCGCCTACTGCTGCATGCTCCTCGAACTCTCGTGACTCCCCAGA
TGTCCACGAGAGCGATGATGCCACAAAGGAAGCGATGACCATGGACGTGT
ACAGTTCCTCCAGCAGCTATTCCAGCAGCTATGACCTCGTCGGTTCCTTT
GTGACCGTGCCGGGCACACAACTCGGGGCCGGTCACAGGGTGAACCTCAA
TAGACCCTTGGCCTCGTCGTTGACGGTTGCTCCCTATCTTTCGGCAGGAC
AGTGGGTTGACATCAGCGAGGTTCGTCGGTGTTACCGGGCACGCTCGCGA
CCCGGAGGCTGGGAGGTAGTCTAGGTAGCAGGATGTTTGCCGGCCGTCCT
TTTTCTCCACCCAGGCAACAGTATTTTTTACCCCTACCCTGACGAAGAAA
TGGACGTGGTGGCCTGTGCTGATCACAACAACCCTAAAGAGGCTGCGTAC
AGCCATCTACCGCCCTGTGTACTTATTGCAGTCGTGCGAAGAGGTCTTTC
GCCGAAACATGCCCAGCCTCACAGGGTGCTTTTCTATCGGGGTGTTTCTC
TCTGTCACAGGTGGAAATCTACGTGGAGGTGACCCAGACCGAGGTGTTCA
TTCCCGCGGCGGAAGCGTGGAACGAGGGTGAGCGCTAA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12385:86..2773+ >mRNA_E-fasciculatus_F_contig12385.1837.1 ID=mRNA_E-fasciculatus_F_contig12385.1837.1|Name=mRNA_E-fasciculatus_F_contig12385.1837.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12385:86..2773+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCACGAGAGTGACGACGCCACACAGCTATCGATTTCTTTCGACATTGA
GGTCGGGTACGACGTGGTGCACACGGACTTGACGTCGCCAGGGACCGCCC
TGGGCGCGGGACAGCGTGTGAACATGCCACCGGACACATCTGGAAGATAC
CTCGATCTGCTTTTCGACCTGACGAGCGATCAAACAATCGGTGTTAGCGA
GTTCCACGAGAGTGACGACGCCACACAGCTATCGATTTCTTTCGACATTG
AGGTCGGGTACGACGTGGTGCACACGGACTTGACGTCGCCAGGGACCGCC
CTGGGCGCGGGACAGCGTGTGAACATGCCACCGGACACATCTGGAAGATA
CCTCGATCTGCTTTTCGACCTGACGAGCGATCAAACAATCGGTGTTAGCG
AGGTGGAAATCTTTCTAGACGTGGACGATCCCGCTGAAGTGGTGGTTGCG
ACGCTTCCTACAATATATACCGGTGGAAATCTTTCTAGACGTGGACGATC
CCGCTGAAGTGGTGGTTGCGACGCTTCCTACAATATATACCGTCAACGTC
GACACCGTCTCCAACGTCGTGGCGACCGCAAGTTTCTGGGACTTGAGCAC
CGATGCAGGGTGCGGGGAAGCTGGCTGCGATCCTAGGCTAGCACACTCAA
CGTCGACACCGTCTCCAACGTCGTGGCGACCGCAAGTTTCTGGGACTTGA
GCACCGATGCAGGGTGCGGGGAAGCTGGCTGCGATCCTAGGCTAGCACAC
GACGGTCACAATAACACGGTCGCGTCCTCGAGGTGGTCGTGCGAGTCGAG
TTGGGACGAGGATAGTGCTTACTATTTCTCGAACCCCCAATATTGCTTCC
TGGAGTTCGTCTTCGGGGACGATGACGGCCTATTCACTGTTTCGCACGTG
GTGATATGACGGTCACAATAACACGGTCGCGTCCTCGAGGTGGTCGTGCG
AGTCGAGTTGGGACGAGGATAGTGCTTACTATTTCTCGAACCCCCAATAT
TGCTTCCTGGAGTTCGTCTTCGGGGACGATGACGGCCTATTCACTGTTTC
GCACGTGGTGATATATGTCCACGAGAGCGATGATGCCACAAAGGAAGCGA
TGACCATGGACGTGTACAGTTCCTCCAGCAGCTATTCCAGCAGCTATGAC
CTCGTCGGTTCCTTTGTGACCGTGCCGGGCACACAACTCGGGGCCGGTCA
CAGGGTGAACCTCAATAGACCCTTGGCCTCGTCGTTGACGGTTGCTCCCT
ATCTTTCGGCAGGACAGTGGGTTGACATCAGCGAGATGTCCACGAGAGCG
ATGATGCCACAAAGGAAGCGATGACCATGGACGTGTACAGTTCCTCCAGC
AGCTATTCCAGCAGCTATGACCTCGTCGGTTCCTTTGTGACCGTGCCGGG
CACACAACTCGGGGCCGGTCACAGGGTGAACCTCAATAGACCCTTGGCCT
CGTCGTTGACGGTTGCTCCCTATCTTTCGGCAGGACAGTGGGTTGACATC
AGCGAGGTGGAAATCTACGTGGAGGTGACCCAGACCGAGGTGTTCATTCC
CGCGGCGGAAGCGTGGAACGAGGGTGAGCGCTAAGTGGAAATCTACGTGG
AGGTGACCCAGACCGAGGTGTTCATTCCCGCGGCGGAAGCGTGGAACGAG
GGTGAGCGCTAA back to top
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