mRNA_E-fasciculatus_F_contig12381.1834.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12381.1834.1
Unique NamemRNA_E-fasciculatus_F_contig12381.1834.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: D8LE82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE82_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.900e-19
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LEAVRLERR+GN+KG DSLM KALQECPGSGVLWAEE L AQR+EQK
Sbjct:    3 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 49
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: K0R5N5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R5N5_THAOC)

HSP 1 Score: 64.3 bits (155), Expect = 8.370e-11
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LEA+RLERRAGN+K A SLMA+ALQECPGSG L AE I+ + R EQK
Sbjct:  814 LEAIRLERRAGNDKLAVSLMARALQECPGSGRLLAENIITSPRVEQK 860
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: A0A7S2EY21_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EY21_TRICV)

HSP 1 Score: 62.4 bits (150), Expect = 3.990e-10
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            +EAVRLERRAGN+K A +LMA+ALQECP SG+L AE I  A R EQK
Sbjct:  403 VEAVRLERRAGNDKLASALMARALQECPSSGLLLAENIATAPRPEQK 449
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: A0A6U1QKH3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1QKH3_CYCTE)

HSP 1 Score: 61.6 bits (148), Expect = 4.970e-10
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LEA+RLERRAGN+K A +LMA+ALQECP SG L AE I+ A R EQK
Sbjct:   99 LEAIRLERRAGNDKLAVTLMARALQECPTSGKLLAENIMTAPRVEQK 145
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: A0A7S4QCV6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QCV6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.470e-10
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            +EAVRLERRAGN+K A +LMA+ALQ+CP SG+L AE I+ + R EQK
Sbjct:  860 VEAVRLERRAGNDKLASALMARALQDCPSSGLLLAENIITSPRVEQK 906
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: A0A7S2USD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.160e-10
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    4 EAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            EA+RLERR GN+K A++L AKALQ+CP SG++WAEEI  A R +Q+
Sbjct:  166 EAIRLERRHGNSKLAENLTAKALQDCPSSGIIWAEEISCAPRHQQR 211
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: A0A7S3MBI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBI4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.130e-9
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LE +RLERR+G+ K A+SLMAKAL+ECP SG LWAEE+L   +  QK
Sbjct:  222 LECIRLERRSGHEKLAESLMAKALRECPKSGALWAEELLTCAKPLQK 268
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.400e-9
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            LE +RLERR+G+ K A+SLMAKAL+ECP SG LWAEE+L   +  QK
Sbjct:  782 LECIRLERRSGHEKLAESLMAKALRECPKSGALWAEELLTCAKPLQK 828
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: B8C695_THAPS (RNA splicing factor n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C695_THAPS)

HSP 1 Score: 60.8 bits (146), Expect = 1.400e-9
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            +EA+RLERRAGN+K A SLMA+ALQECP SG+L AE I  + R EQK
Sbjct:  771 VEAIRLERRAGNDKLAVSLMARALQECPSSGLLLAENISTSPRVEQK 817
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BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Match: A0A453J3T8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J3T8_AEGTS)

HSP 1 Score: 59.7 bits (143), Expect = 1.460e-9
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK 141
            L A+R E R GNNK ADSL+AKALQECP SG+LWA  I +  RA++K
Sbjct:   41 LAAIRAELRHGNNKEADSLLAKALQECPTSGILWAAAIEMVPRAQRK 87
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12381.1834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE82_ECTSI1.900e-1985.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0R5N5_THAOC8.370e-1172.34Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2EY21_TRICV3.990e-1070.21Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6U1QKH3_CYCTE4.970e-1070.21Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4QCV6_9STRA7.470e-1065.96Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2USD3_9STRA9.160e-1063.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3MBI4_9STRA1.130e-963.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3MCI9_9STRA1.400e-963.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
B8C695_THAPS1.400e-968.09RNA splicing factor n=1 Tax=Thalassiosira pseudona... [more]
A0A453J3T8_AEGTS1.460e-963.83Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12381contigE-fasciculatus_F_contig12381:965..1105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue4.5e-09
Seed eggNOG ortholog159749.K0R5N5
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.HAT (Half-A-TPR) repeats
EggNOG OGs2XAUY@2836,KOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927744.9327877-CDS-E-fasciculatus_F_contig12381:964..11051622927744.9327877-CDS-E-fasciculatus_F_contig12381:964..1105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12381 965..1105 +
1695995676.3362403-CDS-E-fasciculatus_F_contig12381:964..11051695995676.3362403-CDS-E-fasciculatus_F_contig12381:964..1105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12381 965..1105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12381.1834.1prot_E-fasciculatus_F_contig12381.1834.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12381 965..1105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12381.1834.1

>prot_E-fasciculatus_F_contig12381.1834.1 ID=prot_E-fasciculatus_F_contig12381.1834.1|Name=mRNA_E-fasciculatus_F_contig12381.1834.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=47bp
LEAVRLERRAGNNKGADSLMAKALQECPGSGVLWAEEILVAQRAEQK
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mRNA from alignment at E-fasciculatus_F_contig12381:965..1105+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12381.1834.1 ID=mRNA_E-fasciculatus_F_contig12381.1834.1|Name=mRNA_E-fasciculatus_F_contig12381.1834.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=141bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12381:965..1105+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGAGGCGGTGCGTCTGGAGCGGCGAGCGGGGAACAACAAGGGCGCGGA
CAGCCTCATGGCCAAGGCGCTGCAGGAGTGTCCCGGGTCCGGCGTGCTTT
GGGCGGAGGAGATCTTGGTGGCGCAACGAGCCGAGCAAAAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12381:965..1105+

>mRNA_E-fasciculatus_F_contig12381.1834.1 ID=mRNA_E-fasciculatus_F_contig12381.1834.1|Name=mRNA_E-fasciculatus_F_contig12381.1834.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=282bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12381:965..1105+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGAGGCGGTGCGTCTGGAGCGGCGAGCGGGGAACAACAAGGGCGCGGA
CAGCCTCATGGCCAAGGCGCTGCAGGAGTGTCCCGGGTCCGGCGTGCTTT
GGGCGGAGGAGATCTTGGTGGCGCAACGAGCCGAGCAAAAACTGGAGGCG
GTGCGTCTGGAGCGGCGAGCGGGGAACAACAAGGGCGCGGACAGCCTCAT
GGCCAAGGCGCTGCAGGAGTGTCCCGGGTCCGGCGTGCTTTGGGCGGAGG
AGATCTTGGTGGCGCAACGAGCCGAGCAAAAA
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