mRNA_E-fasciculatus_F_contig1238.1831.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1238.1831.1 vs. uniprot
Match: D7G918_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G918_ECTSI) HSP 1 Score: 1220 bits (3156), Expect = 0.000e+0 Identity = 692/820 (84.39%), Postives = 716/820 (87.32%), Query Frame = 1
Query: 1 MGDGENPSWLGSVIDQVDRLALVIGGYEEAEPPGNGFSDDESDSNSTSGXXXXXXXXSGDSXFXXXXXXXXXXXXXXXAGPLPVLKTRTEYKPEAVEGGDAPPSDDLKPMRPERSSKQVPPVSSAEKIPSLSVTRSQISEENCDENNVQGSEEEPLGKAIDGFASECPQAVSSGNNALLESATPSRSQSRLTKGDVPVLDAGVPRQEGDGKSPRQQSDVVGDLDLTFSTPAHSRDRDAFRNGPPLAAVPVASSAGSRRVNREKNRSREGLNAIPPMDTRSSKDAGHISPSGAPRLPASKKKKKFSYVSDTTWMKPKEEMV-ETSSPPLELESRVAVTGGQAPSQANTLASPAGKPLASDCAAPETTVGAAEVDQASTLRRNRHRPPREKDPGPKEADTD-LPVETQSEEALEVPAEDGKSDGEGMPETEKIAEAVALAHP----APGETTTADLRADQADANGLEEPHEGENGAGHERAFQAGGNQEEARQETKDRDEVEPDIWNEGVAMIGAKRMSSENGNGMGSPAEDWILDSPEGFAPSKRGKVQSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDEDGAKKAVSDGSNGLGSGGGDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELAFDSEEQSDGTLATKEAIPSFSYLEEADMRTALGAGVQLEGIVGEQPPEEESGIEAKQRFIDTIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEADYCAWALFNLDTHCGFVAESYGIQTIPL 2442
MGDGENPSWLG VIDQVDRLAL IGGYEEAEPPGNGFSDDESDSNSTS XXXXXXXXSGDS F XXXXXXXXX AGP PVLKTRTEYK EA E GDAP SDDLKPM+PERSSKQVPPVSSAE IPSLSVTRSQIS+ENCDEN+VQGSEEE LGK ECPQ VSSG+NA LESATPS SQ RLTK DVPVL+ VPRQ+GDG SPRQ DV+GDLD TFSTPAH+RDRDA R GPPL AVPVASSAGSRRVNREK RS EGLNA+ M+T+ SKDAGH+SPS APRLP SKKKKKFSYVSDTTWMKPKEE+ ETSSPP ELESR AVTGG APSQA PA KPLASDCAAPETT GAAEVDQAST RRNRHRPP EKD G K+ADT LPVET+SEE LEV AEDGKS+G MP TE+ AEAVAL HP AP ET T DL DQADANGLEEPHE ENG GH RAFQ G QEEARQ +DRDEVEPDIWNEGVA IGAKRMSSENG MGSPAE+WILD+PEGFAPSKR K+QSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDED AKKAVSDGS GL S GDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELA DSEE+SDGTLATKE +P+FSYL EADMR ALGAGVQLEGIVGEQPPEEESGIEAKQRFI TIA VREEQLRDSPVLVVAHGDTL AAGESLASQIVFEADYCAWALFNLDTHCGFV ESYGIQTIPL
Sbjct: 1 MGDGENPSWLGGVIDQVDRLALKIGGYEEAEPPGNGFSDDESDSNSTSXXXXXXXXXSGDSGFEDAAEXXXXXXXXXDAGPSPVLKTRTEYKEEAAEDGDAPQSDDLKPMKPERSSKQVPPVSSAENIPSLSVTRSQISQENCDENDVQGSEEESLGK-------ECPQVVSSGDNAPLESATPSSSQGRLTKDDVPVLEGDVPRQKGDGNSPRQPLDVLGDLDPTFSTPAHNRDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAMSLMNTQISKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELATETSSPPPELESRAAVTGGHAPSQAP----PARKPLASDCAAPETTAGAAEVDQASTPRRNRHRPPLEKDQGLKKADTAFLPVETRSEEPLEVRAEDGKSNGGSMPVTEEFAEAVALGHPEGRPAPDETVTTDLPQDQADANGLEEPHERENGTGHARAFQEGDYQEEARQGIEDRDEVEPDIWNEGVATIGAKRMSSENG--MGSPAEEWILDAPEGFAPSKREKLQSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDEDVAKKAVSDGSKGLESCDGDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTLATKETVPAFSYLAEADMRAALGAGVQLEGIVGEQPPEEESGIEAKQRFIVTIANVREEQLRDSPVLVVAHGDTLGAAGESLASQIVFEADYCAWALFNLDTHCGFVTESYGIQTIPL 807
BLAST of mRNA_E-fasciculatus_F_contig1238.1831.1 vs. uniprot
Match: A0A6H5KJH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH9_9PHAE) HSP 1 Score: 1122 bits (2902), Expect = 0.000e+0 Identity = 642/800 (80.25%), Postives = 684/800 (85.50%), Query Frame = 1
Query: 1 MGDGENPSWLGSVIDQVDRLALVIGGYEEAEPPGNGFSDDESDSNSTSGXXXXXXXXSGDSXFXXXXXXXXXXXXXXXAGPLPVLKTRTEYKPEAVEGGDAPPSDDLKPMRPERSSKQVPPVSSAEKIPSLSVTRSQISEENCDENNVQGSEEEPLGKAIDGFASECPQAVSSGNNALLESATPSRSQSRLTKGDVPVLDAGVPRQEGDGKSPRQQSDVVGDLDLTFSTPAHSRDRDAFRNGPPLAAVPVASSAGSRRVNREKNRSREGLNAIPPMDTRSSKDAGHISPSGAPRLPASKKKKKFSYVSDTTWMKPKEEMV-ETSSPPLELESRVAVTGGQAPSQANTLASPAGKPLASDCAAPETTVGAAEVDQASTLRRNRHRPPREKDPGPKEADTDLPVETQSEEALEVPAEDGKSDGEGMPETEKIAEAVALAHP----APGETTTADLRADQADANGLEEPHEGENGAGHERAFQAGGNQEEARQETKDRDEVEPDIWNEGVAMIGAKRMSSENGNGMGSPAEDWILDSPEGFAPSKRGKVQSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDEDGAKKAVSDGSNGLGSGGGDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELAFDSEEQSDGTLATKEAIPSFSYLEEADMRTALGAGVQLEGIVGEQPPEEESGIEAKQRFIDTIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEADYCAWALFN 2385
MGDGE PSWLGS+IDQVDRLAL IGGYEE +PPGNGFSDDESDSNST+ XXXSGD XF XXXXXXXXXXXXX AGP PVLKTRTEYK EA EGGDAP SDDL+PM+PE+SSKQ+PPVS A+ IPSLSV RSQ S+ENCDEN+VQGSEE+PLGK E PQ VSSG+NA L+SAT SRS+ LTK DVPVL+ +PR +GDG SPRQ DVVGD+D TFSTPAHSRDRDA R GPPL AVPVASSAGSRRVNREK ++ EGLNA PM+T+ KDAGH+SPSGAPRLP SKKKK FSYVSDTTW+KPKEE+ ETSSPPLEL SR AVTGG APSQ PA KPLASDCAA E T GAAEVDQ+ST RRNRHRPPREKD G K+ADTD P+ET+ EE L V AEDGKS+G MP TE+IAEAVALAHP AP ET T L DQADANGLEEPHE ENG GH RAFQ GG QEEARQ DRDEVEP IWNEGVA IGAKRMSSENG MGSPAE+WILDSPEGFAPSKRGK+QSEHPLAVMRHSARLDDAIFERQR LGA+TAGSGSDED AKKAVSDGS GL SG GDELAAVPWPDRALRPYD PIVDTDLPARQAKALGRLGMGSQTVI+CSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELA DSEE+SDGTLATKEA+P+FSYLEEADMR ALGAGVQLE I+GEQPPEEESGIEAKQRFI TIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFE A+++
Sbjct: 1 MGDGEKPSWLGSMIDQVDRLALKIGGYEEPKPPGNGFSDDESDSNSTNSGSSSEXXXSGDXXFEXXXXXXXXXXXXX-AGPSPVLKTRTEYKEEAAEGGDAPQSDDLEPMKPEQSSKQIPPVSIADNIPSLSVRRSQTSQENCDENDVQGSEEKPLGK-------EYPQVVSSGDNAPLDSATSSRSEGLLTKDDVPVLEGDLPRPQGDGNSPRQPLDVVGDVDSTFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREK-KNNEGLNAKSPMNTQILKDAGHVSPSGAPRLPGSKKKKNFSYVSDTTWIKPKEELAAETSSPPLELASRAAVTGGHAPSQVP----PARKPLASDCAAAEATEGAAEVDQSSTPRRNRHRPPREKDHGLKKADTDFPMETRPEEPLHVRAEDGKSNGGRMPVTEEIAEAVALAHPEGRPAPDETVTTHLPEDQADANGLEEPHERENGTGHARAFQEGGYQEEARQGIDDRDEVEPGIWNEGVATIGAKRMSSENG--MGSPAEEWILDSPEGFAPSKRGKLQSEHPLAVMRHSARLDDAIFERQRMLGAITAGSGSDEDVAKKAVSDGSKGLESGDGDELAAVPWPDRALRPYDPPIVDTDLPARQAKALGRLGMGSQTVIVCSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTLATKEAVPAFSYLEEADMRAALGAGVQLERIIGEQPPEEESGIEAKQRFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEGQMICAAMYS 785
BLAST of mRNA_E-fasciculatus_F_contig1238.1831.1 vs. uniprot
Match: A0A835YJL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJL4_9STRA) HSP 1 Score: 110 bits (276), Expect = 2.590e-21 Identity = 108/360 (30.00%), Postives = 136/360 (37.78%), Query Frame = 1
Query: 1813 WPDRALRPYDSPIVDTDLPARQAKAL---GRL------GMGSQTV----------------------------IICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAE---LAFDSEEQSDGTLATKEAIP---------SFSYLEEADMRTALGAGVQLEGIVGEQPPEEESGIEAKQRFIDTIAKV-REEQLRD---------------------------------------------------------------------------------------------SPVLVVAHGDTLDAAGESLASQIVFEADYCAWALFNLDTHCGF-------VAESYGIQTIPL 2442
W DRA RPYD+PIVD AR A A+ G L G TV I+ SPFRRCLQTAG VAR G V VHL VGERMDKVR+E L +EE + +A P +F+YL +M ALG GV L ++GE+PP ES ++AK R+ +A++ R ++L S V+VVAHGDTL AA ESLA +++EADYCAW + G VA G+Q +PL
Sbjct: 395 WTDRAARPYDTPIVDDGRAARAALAVLDSGALEGAWYSGASDATVWEMAAAGAPIGXXXXXXXXXXXXXXXLCIVSSPFRRCLQTAGHVARVFGCGVVHVHLGVGERMDKVRQECGPGTLLVDPAEEAQRPDASASDAPPPAASSLRRVAFAYLTPEEMGDALGEGVALGTVLGERPPLTESAMQAKLRYSHVLARMCRGKELPAVANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKARTGISHVVVVAHGDTLGAAAESLAGHLLYEADYCAWLAVAVGQRGGVGGGALGGVAACAGVQMMPL 754
BLAST of mRNA_E-fasciculatus_F_contig1238.1831.1 vs. uniprot
Match: A0A812JSX5_9DINO (VAPB protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JSX5_9DINO) HSP 1 Score: 70.1 bits (170), Expect = 1.790e-8 Identity = 66/217 (30.41%), Postives = 98/217 (45.16%), Query Frame = 1
Query: 1813 WPDRALRPYDSPIVDTDLPARQAKALGR-LGMG-SQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELAFDSEEQSDGTLATKEAIPSFSYLE-EADMRTALGAGVQLE-GIVGEQPPEEESGIEAKQRFIDTIAKV------REEQLRDSPVLVVAHGDTLDAAGESLASQIVFEADYCAWALFNLDTHCGFVAESYGIQT 2433
WPD RPYD+PI + +LP A+ L L G + ++ SPFRRCLQTA + R LG+ + V ++GE M V ++ + EA+ F Y+ E A AG+QL + P +ES + +R +D A + +EE VL+V H D L L ++ + CAW L L H V + ++T
Sbjct: 34 WPDAGQRPYDTPISNEELPLESAQVLKESLPEGVAVCAVVSSPFRRCLQTAALAGRQLGLKMLHVDNRLGELMAAVARDCGPVKL-------------EAL-GFRYISFEEAANIAEEAGLQLHWDPAADVPATDESAADILRR-VDAGAAIARSALGKEEFSPTECVLLVTHADLLMQRLSKLMPGSIWAPETCAWFLECL--HDDSVPSMHRLET 233 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1238.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1238.1831.1 >prot_E-fasciculatus_F_contig1238.1831.1 ID=prot_E-fasciculatus_F_contig1238.1831.1|Name=mRNA_E-fasciculatus_F_contig1238.1831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=815bp MGDGENPSWLGSVIDQVDRLALVIGGYEEAEPPGNGFSDDESDSNSTSGGback to top mRNA from alignment at E-fasciculatus_F_contig1238:3224..7569+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1238.1831.1 ID=mRNA_E-fasciculatus_F_contig1238.1831.1|Name=mRNA_E-fasciculatus_F_contig1238.1831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4346bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1238:3224..7569+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1238:3224..7569+ >mRNA_E-fasciculatus_F_contig1238.1831.1 ID=mRNA_E-fasciculatus_F_contig1238.1831.1|Name=mRNA_E-fasciculatus_F_contig1238.1831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1238:3224..7569+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |