mRNA_E-fasciculatus_F_contig12377.1830.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12377.1830.1
Unique NamemRNA_E-fasciculatus_F_contig12377.1830.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12377.1830.1 vs. uniprot
Match: D7FZI9_ECTSI (BUB1 N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI9_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 6.820e-37
Identity = 80/100 (80.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:  139 AAWADYGTRASRQKENTANPSRWTDGALGDRPGAPAPASTRRGERVRAAAAPFPIYIDEQFVEKEEHANPAGTTAPHXXXXXXXXXXXXXXGLSVRRQLD 438
            AAWADYGTRASRQKENTANPSRWTDGALGDRPGA APA TRRGE VRAAA PFPIYIDEQFVEKEEHANPA T APH              GLSVRRQLD
Sbjct:  391 AAWADYGTRASRQKENTANPSRWTDGALGDRPGAAAPAPTRRGEGVRAAA-PFPIYIDEQFVEKEEHANPAAT-APHNPGPSAKRPPPGG-GLSVRRQLD 487
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12377.1830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZI9_ECTSI6.820e-3780.00BUB1 N-terminal domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12377contigE-fasciculatus_F_contig12377:625..2957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue5.3e-32
Seed eggNOG ortholog2880.D7FZI9
KEGG koko:K02178
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,map04110,map04111,map04113,map04114,map04914
EggNOG free text desc.meiotic sister chromatid cohesion, centromeric
EggNOG OGsKOG1166@1,KOG1166@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size442
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12377.1830.1prot_E-fasciculatus_F_contig12377.1830.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12377 625..2955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927744.0112526-CDS-E-fasciculatus_F_contig12377:624..8271622927744.0112526-CDS-E-fasciculatus_F_contig12377:624..827Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12377 625..827 +
1695995676.0690613-CDS-E-fasciculatus_F_contig12377:624..8271695995676.0690613-CDS-E-fasciculatus_F_contig12377:624..827Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12377 625..827 +
1622927744.02443-CDS-E-fasciculatus_F_contig12377:2042..21781622927744.02443-CDS-E-fasciculatus_F_contig12377:2042..2178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12377 2043..2178 +
1695995676.0798907-CDS-E-fasciculatus_F_contig12377:2042..21781695995676.0798907-CDS-E-fasciculatus_F_contig12377:2042..2178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12377 2043..2178 +
1622927744.0384846-CDS-E-fasciculatus_F_contig12377:2856..29551622927744.0384846-CDS-E-fasciculatus_F_contig12377:2856..2955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12377 2857..2955 +
1695995676.0888522-CDS-E-fasciculatus_F_contig12377:2856..29551695995676.0888522-CDS-E-fasciculatus_F_contig12377:2856..2955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12377 2857..2955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12377.1830.1

>prot_E-fasciculatus_F_contig12377.1830.1 ID=prot_E-fasciculatus_F_contig12377.1830.1|Name=mRNA_E-fasciculatus_F_contig12377.1830.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp
EAFTAGPEAAAAAARARRAAGGGILDDSFQDGDEGGRSSSSSSSSSAAWA
DYGTRASRQKENTANPSRWTDGALGDRPGAPAPASTRRGERVRAAAAPFP
IYIDEQFVEKEEHANPAGTTAPHHHPIPPVKRPPPGGGLSVRRQLD
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mRNA from alignment at E-fasciculatus_F_contig12377:625..2957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12377.1830.1 ID=mRNA_E-fasciculatus_F_contig12377.1830.1|Name=mRNA_E-fasciculatus_F_contig12377.1830.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12377:625..2957+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGCGTTCACAGCCGGGCCGGAGGCGGCGGCGGCGGCGGCGAGGGCACG
GCGAGCGGCCGGAGGAGGTATCCTCGACGACTCTTTCCAAGATGGGGATG
AGGGCGGACGTTCGTCTTCGTCTTCTTCTTCTTCTTCCGCGGCGTGGGCG
GACTATGGTACGCGGGCATCTCGTCAGAAGGAGAACACCGCCAACCCCAG
CAGGTGCGTGCCGAAGGTTGGTATCCTATACTAAAACCAAGACACTTGGA
AACCTTGTATTCACTTGGGGGACCTTATACTAAAACAAGTACAAAGGGCG
CACCAACACTAAAACCAGTACAATGGGCGCACCAATACCAAAATCTGTAC
AACGGGGGCCCCAATGCTATAACCGGTACAACACGCGCTCCCACACTAAA
ACCTATACACTCGGGCTTCGCGTCAGAAGGAAAAACACTGCCAACTCCAG
CAGGTGTGTCCCGAAGGTTGAGCAAGAGGCCACACACCCTTGACCGTTTG
CTGACTTATGCTTGTACTACAAAATATCCAAGACACTTGGGGACCTATCC
CAAACCTTATACACGATACTAAACCCCGTACCATAGGCGCACTAAAACTA
AGACCAGTACAATAGGCACCCCGATACTAATATCTGTACAACAGGCGCCC
CAATACTATATATAACCAGTACAATAGGCGCTTCCATACTAAAACGAGTA
ACAATGGACCACCACATACTAGGACACTCCAACCCCAGCAGGTCTGTCCC
GTAGGCTGCTTGTCCTGCCAACAACAGCAGCAGCGCCTGCGCAACCACAC
CCTACATCCCCCCCCATTCGATGTGATAGCCTGGTACGGCGAGAAGACGG
CGTTCTCCGTGCCGGCTTTGCAGGGATGCGAGGTCGGTCAATGGTCAAAC
GACTACAGGCTTGCACGACTACTGTGAACACACCCACCTACTTACCCCCC
ATGCGTTTACGTGCCCCCCTCCCTCTTCGATGCAGCCTTTTTCGTGCCCG
GGTGGAGCTTGAGACACCAACTACTCACTGCTGTACAAATGTCATCTATT
GTAAGACCTCCACCCCGTACTCACAATAACTCCCGGTCCATGCGACAGCT
CACTTTTAATGGTTTCTGGAGGGAGAAGAGGAAAAAATCCCCCAAGACAT
TCATAAAAATGCAAGGTTCCATGGTTTGTCCCTCAAATTTTGAAATCCAT
CCGGTCTCGTCGTATTTTGCAGGAGTATAAGCAAAAATACAAATACAAAC
ACAGAATTTGTACTCGTTCGAGGTTCGAGATATAGCCACAGAAGTCGAAG
GCGATGCGTTGAAGTCTTTACATTGAGTGGAGGGAAACCTGCTTGACACT
GGAAGCACGTACGAGTACAGTACCCCAGTACTCCCCGTTTTTGCGTCGCT
GCCTTTTTGTGTGTCCAGGTGGACGGATGGAGCCTTAGGAGACCGCCCCG
GAGCCCCCGCCCCCGCTTCTACCCGACGGGGGGAGAGAGTGAGGGCAGCG
GCGGCACCGTTCCCTATCTACATTGACGAGCAGTTCGTGGAGAAAGAGGA
GCATGTAAGTGTCATCACCTCGTGTGAACCCTCCTCCCCCCCCCCCTACC
TCATGGCGCTTCGCGCTTGGTGATGTGATGAGCTAGCCTGGTCCGGTGAG
AACCCGGCGTGCTCGGTTCCAGCTTTTGTAGGGATTCGAGGTCGATCAAT
GGTCTACAGCAGTAACGTTTGGCATGAACGGCCATGGGTATACCCCCATC
CCCTCGCCCCGTCAATGGGGGTTTATACTGAGTGCGGCTCCCCCATGTTT
CGGCAAGCGATACCGTTCGTTGAAGAGCAGTTCTTGGAGAAGGAGGAACA
TGTGCCCCCCCCATTCCCTCGATGTGGCTTTCGGCTTTCGGGGTAGTGTG
GCCCCCTCGTATTTGGCAAAAGGCGTTGTTGCTGTAGTGTTTTTCCGATT
TTGTTCCCGCAATTTTCAAAGTATGGCAGCACTGATGTGCGCACAAAAAA
TGTTGTTCTTGTAGCTGACATGTGTCTGTCTGTCTCTCTGTCTCTCTGTC
TCTCTCTGTCTGTCTCTCTGTCTGTCTATCGGTCTGTCTGTCTCTCTGTC
TCTCTGTCTGCCTGTCTGTCTGTCTGTCGGTATGTCTGTCTGTCTGTCTT
CCTGCCTCTCCGTCTGTCGCTCTCTTCCCTCCTCATCACCCGGTGCTCGT
TTTTTTATTTTCCTCCCCACACCTACGTGTAGGCGAACCCTGCTGGTACC
ACCGCCCCCCACCACCACCCCATCCCACCGGTGAAACGCCCGCCGCCCGG
GGGAGGGCTATCGGTAAGGCGTCAGCTTGATCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12377:625..2957+

>mRNA_E-fasciculatus_F_contig12377.1830.1 ID=mRNA_E-fasciculatus_F_contig12377.1830.1|Name=mRNA_E-fasciculatus_F_contig12377.1830.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12377:625..2957+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGCGTTCACAGCCGGGCCGGAGGCGGCGGCGGCGGCGGCGAGGGCACG
GCGAGCGGCCGGAGGAGGTATCCTCGACGACTCTTTCCAAGATGGGGATG
AGGGCGGACGTTCGTCTTCGTCTTCTTCTTCTTCTTCCGCGGCGTGGGCG
GACTATGGTACGCGGGCATCTCGTCAGAAGGAGAACACCGCCAACCCCAG
CAGGAAGCGTTCACAGCCGGGCCGGAGGCGGCGGCGGCGGCGGCGAGGGC
ACGGCGAGCGGCCGGAGGAGGTATCCTCGACGACTCTTTCCAAGATGGGG
ATGAGGGCGGACGTTCGTCTTCGTCTTCTTCTTCTTCTTCCGCGGCGTGG
GCGGACTATGGTACGCGGGCATCTCGTCAGAAGGAGAACACCGCCAACCC
CAGCAGGTGGACGGATGGAGCCTTAGGAGACCGCCCCGGAGCCCCCGCCC
CCGCTTCTACCCGACGGGGGGAGAGAGTGAGGGCAGCGGCGGCACCGTTC
CCTATCTACATTGACGAGCAGTTCGTGGAGAAAGAGGAGCATGTGGACGG
ATGGAGCCTTAGGAGACCGCCCCGGAGCCCCCGCCCCCGCTTCTACCCGA
CGGGGGGAGAGAGTGAGGGCAGCGGCGGCACCGTTCCCTATCTACATTGA
CGAGCAGTTCGTGGAGAAAGAGGAGCATGCGAACCCTGCTGGTACCACCG
CCCCCCACCACCACCCCATCCCACCGGTGAAACGCCCGCCGCCCGGGGGA
GGGCTATCGGTAAGGCGTCAGCTTGATGCGAACCCTGCTGGTACCACCGC
CCCCCACCACCACCCCATCCCACCGGTGAAACGCCCGCCGCCCGGGGGAG
GGCTATCGGTAAGGCGTCAGCTTGAT
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