mRNA_E-fasciculatus_F_contig12374.1828.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12374.1828.1
Unique NamemRNA_E-fasciculatus_F_contig12374.1828.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: A0A6H5KBT1_9PHAE (DDHD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.540e-33
Identity = 79/147 (53.74%), Postives = 83/147 (56.46%), Query Frame = 1 
Query:    4 PTPCCDSK----------VDSDLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEE------------------------------------------------TQEKEDEARDGLGELPAGLGRVEYLPVEWHTR 270
            P+P C S+          VDSDLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEE                                                TQE+E E RD LGE+P GLGRVEYLPVEWHTR
Sbjct:  405 PSPSCSSQYGCGAEGADEVDSDLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEEVVLNSKDLRGLRLKKGLRKSGRVGGSEDCGGDXXXXXXXXXXXXXAEATQEEEGE-RDCLGEVPTGLGRVEYLPVEWHTR 550
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: D8LDT5_ECTSI (DDHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT5_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 7.710e-31
Identity = 71/130 (54.62%), Postives = 73/130 (56.15%), Query Frame = 1 
Query:   25 KVDSDLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEETQEKEDEAR------------------------------------------------DGLGELPAGLGRVEYLPVEWHTR 270
            KVDSDLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEE      + R                                                D LGE+P GLGRVEYLPVEWHTR
Sbjct:  413 KVDSDLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEEVVLNSKDLRGLRKKKGIRKRGRVGGSEDFGGXXXXXXXXXXXXXXXXXXXXXXXXXRDCLGEVPTGLGRVEYLPVEWHTR 542
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: A0A7R9YCD7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCD7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.510e-17
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:   37 DLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEETQEKEDE---ARDGLGELPAGLGRVEYLPVEWHTR 270
            DL+E VEHLVLVVHGIG+AL + D+G++QLRSLV+CC+ +R +H+   +   +    RD  G      GRVE+LPVEWHTR
Sbjct:  879 DLDEPVEHLVLVVHGIGEALEANDMGVIQLRSLVQCCNQLRRNHDTVCDANLQMFGTRDFHGR-----GRVEFLPVEWHTR 954
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: A0A835YIJ9_9STRA (DDHD domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIJ9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.210e-16
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   10 PCCDSKVDSDLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEE 174
            P  + +VD+DL E V HLVLVVHGIGDAL SVDLG+VQL SLV+CCD+MRAHH E
Sbjct:  721 PDAEVEVDADLLEPVSHLVLVVHGIGDALSSVDLGVVQLHSLVDCCDSMRAHHAE 775
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: A0A8K1FPX5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPX5_PYTOL)

HSP 1 Score: 76.3 bits (186), Expect = 3.220e-14
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 EPTPCCDSKVDSDLEERVEHLVLVVHGIGDALMSVDL-GMVQLRSLVECCDTMRAHHEETQEKEDEARDGLGELPAGLGRVEYLPVEWHTR 270
            +P+    ++ D+D+EE ++HLVL+VHGIGDAL ++D+  +V LRS+++C  ++R  H E         DGLG+      R E+LP+EWHT+
Sbjct:  560 DPSEVPPNEDDADIEEEIDHLVLIVHGIGDALKTIDIINVVTLRSIIDCATSLRDLHREALRSTH--FDGLGDKHP---RTEFLPIEWHTK 645
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: D0MT42_PHYIT (Phospholipase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT42_PHYIT)

HSP 1 Score: 75.9 bits (185), Expect = 4.390e-14
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   31 DSDLEERVEHLVLVVHGIGDALMSVDL-GMVQLRSLVECCDTMR---------AH--HEETQEKEDEARDGLGELPAGLGRVEYLPVEWHTR 270
            D D+EE +EHLVL+VHGIGDAL ++DL  +V LRS+++C  T+R         AH  H   ++ +DE +    E      RVE+LP+EWH++
Sbjct:  554 DKDIEEEIEHLVLIVHGIGDALKTLDLINVVTLRSIIDCSTTLRELNREALRSAHFAHLNGEDADDETKGDNKEKATRQPRVEFLPIEWHSK 645
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: H3GPA5_PHYRM (DDHD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPA5_PHYRM)

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-14
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    1 EPT---PCCDSKVDSDLEERVEHLVLVVHGIGDALMSVD-LGMVQLRSLVECCDTMRAHHEETQEK--------EDEARDGLGELPAGLGRVEYLPVEWHTR 270
            EPT   P  D++ D+D+EE +EHLVL+VHGIGDAL ++D + +V LRS+++C  T+R  + E            ED   +   +  +   RVE+LP+EWH++
Sbjct:  570 EPTSGKPLVDTEDDNDIEEEIEHLVLIVHGIGDALKTLDFVNVVTLRSIIDCSTTLRELNREALRSAHFVHMGGEDTEAETKDDPSSRQPRVEFLPIEWHSK 671
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: A0A7S2UD84_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD84_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.650e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   37 DLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCDTMRAHHEETQEKEDEARDGLGE-LP-AGLGRVEYLPVEWH 264
            D  + ++HL+LVVHGIG+ L S DL  + + S+ ECCD +R +HE+ Q  E E ++   + LP +  GRVEY+PVEWH
Sbjct:    7 DDSDNIDHLMLVVHGIGEMLQSSDLFGMPISSINECCDWLRKNHEKLQAMEAETKESSDDGLPTSSSGRVEYIPVEWH 84
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: A0A662WS52_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WS52_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.820e-13
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   31 DSDLEERVEHLVLVVHGIGDALMSVDL-GMVQLRSLVECCDTMRAHHEET------QEKEDEARDGL-GELPAGLGRVEYLPVEWHTR 270
            D D++E V+HLVL+VHGIGDAL ++DL  +V LRS+++C  T+R  + E        + ED A  G+ G+      RVE+LP+EWH++
Sbjct:  571 DRDIDEDVDHLVLIVHGIGDALKTLDLINVVTLRSIIDCATTLRELNREALRSAHFADAEDRADGGVAGDRGRRRPRVEFLPIEWHSK 658
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BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Match: A0A3F2RJ46_9STRA (DDHD domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJ46_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.240e-13
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   10 PCCDSKVDSDLEERVEHLVLVVHGIGDALMSVDL-GMVQLRSLVECCDTMRAHHEETQEK--------EDEARDGLGELPAGLGRVEYLPVEWHTR 270
            P   ++ D+D+EE V+HLVL+VHGIGDAL ++DL  +V LRS+++C  T+R  + E            E+   +G  +  +   RVE+LP+EWH++
Sbjct:  577 PLVIAEDDNDIEEEVDHLVLIVHGIGDALKTLDLINVVTLRSIIDCATTLRELNREALCSAHFAHLGGEEAVAEGEDKKSSRQPRVEFLPIEWHSK 672
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12374.1828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBT1_9PHAE1.540e-3353.74DDHD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LDT5_ECTSI7.710e-3154.62DDHD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7R9YCD7_9STRA2.510e-1754.32Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835YIJ9_9STRA2.210e-1672.73DDHD domain-containing protein n=2 Tax=Tribonema m... [more]
A0A8K1FPX5_PYTOL3.220e-1441.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MT42_PHYIT4.390e-1443.48Phospholipase, putative n=2 Tax=Phytophthora infes... [more]
H3GPA5_PHYRM4.400e-1440.20DDHD domain-containing protein n=1 Tax=Phytophthor... [more]
A0A7S2UD84_9STRA7.650e-1447.44Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A662WS52_9STRA3.820e-1344.32Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A3F2RJ46_9STRA7.240e-1339.58DDHD domain-containing protein n=3 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12374contigE-fasciculatus_F_contig12374:2783..3882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.6e-26
Seed eggNOG ortholog2880.D8LDT5
Preferred nameSEC23IP
KEGG koko:K16545
GOsGO:0000003,GO:0001675,GO:0003006,GO:0003008,GO:0003674,GO:0003824,GO:0004620,GO:0004806,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005815,GO:0005829,GO:0005856,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006726,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007338,GO:0007610,GO:0007611,GO:0007612,GO:0007626,GO:0007632,GO:0008104,GO:0008150,GO:0008152,GO:0008306,GO:0008542,GO:0009056,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009566,GO:0009628,GO:0009653,GO:0009987,GO:0010256,GO:0010638,GO:0010821,GO:0010822,GO:0010927,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016042,GO:0016043,GO:0016050,GO:0016063,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0019433,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0030134,GO:0030135,GO:0030154,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0033036,GO:0033043,GO:0033363,GO:0034389,GO:0034613,GO:0042440,GO:0042441,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043324,GO:0043473,GO:0043474,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0046148,GO:0046154,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0046907,GO:0048066,GO:0048069,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0052689,GO:0061024,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090114,GO:0090140,GO:0090141,GO:0097038,GO:0097708,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.phospholipase activity
EggNOG OGsKOG2308@1,KOG2308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927743.8640103-CDS-E-fasciculatus_F_contig12374:2782..29561622927743.8640103-CDS-E-fasciculatus_F_contig12374:2782..2956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12374 2783..2956 +
1695995676.0080466-CDS-E-fasciculatus_F_contig12374:2782..29561695995676.0080466-CDS-E-fasciculatus_F_contig12374:2782..2956Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12374 2783..2956 +
1622927743.879244-CDS-E-fasciculatus_F_contig12374:3786..38821622927743.879244-CDS-E-fasciculatus_F_contig12374:3786..3882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12374 3787..3882 +
1695995676.0208356-CDS-E-fasciculatus_F_contig12374:3786..38821695995676.0208356-CDS-E-fasciculatus_F_contig12374:3786..3882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12374 3787..3882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12374.1828.1prot_E-fasciculatus_F_contig12374.1828.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12374 2783..3882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12374.1828.1

>prot_E-fasciculatus_F_contig12374.1828.1 ID=prot_E-fasciculatus_F_contig12374.1828.1|Name=mRNA_E-fasciculatus_F_contig12374.1828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=90bp
EPTPCCDSKVDSDLEERVEHLVLVVHGIGDALMSVDLGMVQLRSLVECCD
TMRAHHEETQEKEDEARDGLGELPAGLGRVEYLPVEWHTR
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mRNA from alignment at E-fasciculatus_F_contig12374:2783..3882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12374.1828.1 ID=mRNA_E-fasciculatus_F_contig12374.1828.1|Name=mRNA_E-fasciculatus_F_contig12374.1828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1100bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12374:2783..3882+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACCAACCCCATGTTGTGACTCGAAGGTTGATTCGGACCTGGAGGAGAG
GGTTGAGCACTTGGTACTTGTCGTCCACGGTATCGGCGACGCGTTGATGT
CGGTGGACCTGGGCATGGTCCAGCTGAGATCGCTGGTCGAGTGCTGCGAC
ACCATGCGAGCACACCATGAAGAGGTAAGAGATGATAAAGAATAAACAAA
GGATTGTTGACTCTTGGGAGGGAGGTGTTCATTTCCTGACGGCGGTAGAA
GGTCGGGGTGGGGGCTGGTCGGTGGGGGGGGGGTGGTGGGGGGGGGGGGG
GGTTTGGCATCATGGAGAAGGGAGATTTTGGCGAGCGGTTTGATTTTTGT
TTCTTGTGAAAGAGACAGTTGTCGTCGTTGCGCACAACGCGCGATTTTTG
TCGACATGCGTCAGGAGCAAGAGGCGTTATGGTCCTCGTATGGTTAATCC
TATAACACATTTCAGACCTTGCCACGGCACACATACCCGCAGAGCCGCTC
TTAACTCTCGCCTTCTTGATTGTTTCCTCCTCCCATCTCGCTCGAGGGCG
AGACAGGACACCACCCGAACACAGCGCGAGGGCTGCAGTGCTTATCTCTT
CTGTTTCCTTTCCCTCCGCGTACTCCCTTCAGTCGGATATCACAGCCTCA
ATAATCGGTGTCACCCCTTACGGCCAACCCTCCATGAACTCGTTGCGTGT
ACGTGGTTGATGTCGTATCGTATGCTCTTTGCCTCAACACTGCATCCCAT
TCGGCACGTCGGTGTTGCCAACCCTGCACTTATTCGTTGCGTTCATGTTG
TTGTTGTCGTATCGCAAGTCCGTTGCCTCAGTACTGCATCCCACTCGGCA
CGTCGTTGTTGCCAACCCCCAAAATTAGGTGGTGTTGAACTCGAAAGACT
TACGGGGGCTCCGCAAGAAGGGGCTCCGCAAGAAGGGGGGTGTCGGAGGC
GGCGGTGGAGGGGGAAGAGACGGAGACGGGCACGGCGGCGCAACAGCCGA
AGAGACGCAGGAGAAGGAAGACGAAGCACGGGACGGCTTAGGCGAGCTGC
CCGCAGGGCTGGGAAGGGTGGAATACCTCCCGGTAGAATGGCACACGCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12374:2783..3882+

>mRNA_E-fasciculatus_F_contig12374.1828.1 ID=mRNA_E-fasciculatus_F_contig12374.1828.1|Name=mRNA_E-fasciculatus_F_contig12374.1828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12374:2783..3882+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACCAACCCCATGTTGTGACTCGAAGGTTGATTCGGACCTGGAGGAGAG
GGTTGAGCACTTGGTACTTGTCGTCCACGGTATCGGCGACGCGTTGATGT
CGGTGGACCTGGGCATGGTCCAGCTGAGATCGCTGGTCGAGTGCTGCGAC
ACCATGCGAGCACACCATGAAGAGGAACCAACCCCATGTTGTGACTCGAA
GGTTGATTCGGACCTGGAGGAGAGGGTTGAGCACTTGGTACTTGTCGTCC
ACGGTATCGGCGACGCGTTGATGTCGGTGGACCTGGGCATGGTCCAGCTG
AGATCGCTGGTCGAGTGCTGCGACACCATGCGAGCACACCATGAAGAGAC
GCAGGAGAAGGAAGACGAAGCACGGGACGGCTTAGGCGAGCTGCCCGCAG
GGCTGGGAAGGGTGGAATACCTCCCGGTAGAATGGCACACGCGCACGCAG
GAGAAGGAAGACGAAGCACGGGACGGCTTAGGCGAGCTGCCCGCAGGGCT
GGGAAGGGTGGAATACCTCCCGGTAGAATGGCACACGCGC
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