mRNA_E-fasciculatus_F_contig12366.1823.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12366.1823.1
Unique NamemRNA_E-fasciculatus_F_contig12366.1823.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12366.1823.1 vs. uniprot
Match: A0A6H5JCF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF1_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 2.530e-101
Identity = 281/471 (59.66%), Postives = 289/471 (61.36%), Query Frame = 1 
Query:  289 MPKVTDEELNGAAAALLGLHARNASSKEVSPAVAPASRPAPVVTRADKDQSGPRHQGLPRGQNPTSPSVPPVAAPAGDNGGRTNQQHQHQQPIPDEEPRSHPYPFFPSPVLASSSGPPSHPEDQQHXXXXXXXXRRVDYYTAACTTAEVAPVVSSRQDFAPAAGAIGSRWIPHPPQNAXXXXXXXXXXXXXSEWTPRFDXXXXXXXXXXXXXDPRAVMALHQNPPSLDPWAFLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPAA------SATRPVPAHAARGNVHYPPQQHEYRGQHDERQYSYPPQHAYHXXXXXXXXXXXXXXXXXXXXXXXLQQQKVDKPSINNLWSLIPGTLERDGGGTRPGNXXXXXXXXXXXXXXXXXXX------AGGYDND--RWFAPDVHPPLTDMARRHRA 1659
            MP VTDEELNGAAAALLGLHARN SSKEV PA APA RPAPVVTRADKDQS PR+QGLPRGQNPTSPSVPPVAA AGD GGRTN Q Q                F+PSPVL S S PPSHP     XXXXXX  R VDYY    TT EV PV+SSRQDFAPA  A  +RWIPH PQNA             SEW PRFD             DP +VM LHQNPPSLD WAFLQ XXXXXXXXXXXXXXXXX                                                           AA      SAT P P HAARGNVH PPQQH Y GQHDERQYS PPQH               XXXXXXXX    +QQKVDKPSINNLWSLIPGTL+RDGGG RP  XXXXXXXXXXXXXXXXXXX      AG YD+D  RWFAPDVHPPLTDMARRHRA
Sbjct:    1 MPNVTDEELNGAAAALLGLHARN-SSKEVPPAFAPAPRPAPVVTRADKDQSKPRYQGLPRGQNPTSPSVPPVAA-AGDEGGRTNPQ-QXXXXXXXXXXXXXXXXFYPSPVLTSRSAPPSHPXXXXXXXXXXXHCR-VDYYA---TTKEV-PVISSRQDFAPATQATRARWIPHLPQNAAAAAPRRRQ----SEWAPRFDPPMAAAS------DPWSVMGLHQNPPSLDAWAFLQQXXXXXXXXXXXXXXXXXPAQQQPEISLLSAVVVGPGGSSRQQFRVYQQQDVAPHHHVVRDHYHRDYANVTAAPAAAAAAHLATASATHPAPTHAARGNVHQPPQQHGYVGQHDERQYSCPPQHG------------NQXXXXXXXXEYSQEQQKVDKPSINNLWSLIPGTLKRDGGGARPXXXXXXXXXXXXXXXXXXXXXXXXXXGAGAYDHDNARWFAPDVHPPLTDMARRHRA 441
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BLAST of mRNA_E-fasciculatus_F_contig12366.1823.1 vs. uniprot
Match: D7FVM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM3_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.340e-53
Identity = 106/122 (86.89%), Postives = 109/122 (89.34%), Query Frame = 1 
Query:  289 MPKVTDEELNGAAAALLGLHARNASSKEVSPAVAPASRPAPVVTRADKDQSGPRHQGLPRGQNPTSPSVPPVAAPAGDNGGRTNQQHQHQQPIPDEEPRSHPYPFFPSPVLASSSGPPSHPE 654
            MP VTDEELNGAAAALLGLHARNASSKEV PAVAPA RPAPV TRAD DQS P +QG+PRGQNPTSPSVPPVAA AGD GGRTN Q Q QQPIPDEEPRSHPYPF+PSPVLAS SGPPSHPE
Sbjct:    1 MPNVTDEELNGAAAALLGLHARNASSKEVPPAVAPAPRPAPVATRADNDQSKPLYQGMPRGQNPTSPSVPPVAA-AGDKGGRTNPQQQ-QQPIPDEEPRSHPYPFYPSPVLASRSGPPSHPE 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12366.1823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCF1_9PHAE2.530e-10159.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM3_ECTSI1.340e-5386.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12366contigE-fasciculatus_F_contig12366:2044..4048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1731
Cds size1443
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12366.1823.1prot_E-fasciculatus_F_contig12366.1823.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12366 2332..4048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927743.2682989-UTR-E-fasciculatus_F_contig12366:2043..23311622927743.2682989-UTR-E-fasciculatus_F_contig12366:2043..2331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12366 2044..2331 +
1695995675.7271323-UTR-E-fasciculatus_F_contig12366:2043..23311695995675.7271323-UTR-E-fasciculatus_F_contig12366:2043..2331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12366 2044..2331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927743.283398-CDS-E-fasciculatus_F_contig12366:2331..24051622927743.283398-CDS-E-fasciculatus_F_contig12366:2331..2405Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12366 2332..2405 +
1695995675.7372196-CDS-E-fasciculatus_F_contig12366:2331..24051695995675.7372196-CDS-E-fasciculatus_F_contig12366:2331..2405Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12366 2332..2405 +
1622927743.2945464-CDS-E-fasciculatus_F_contig12366:2679..40481622927743.2945464-CDS-E-fasciculatus_F_contig12366:2679..4048Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12366 2680..4048 +
1695995675.746696-CDS-E-fasciculatus_F_contig12366:2679..40481695995675.746696-CDS-E-fasciculatus_F_contig12366:2679..4048Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12366 2680..4048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12366.1823.1

>prot_E-fasciculatus_F_contig12366.1823.1 ID=prot_E-fasciculatus_F_contig12366.1823.1|Name=mRNA_E-fasciculatus_F_contig12366.1823.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=481bp
MPKVTDEELNGAAAALLGLHARNASSKEVSPAVAPASRPAPVVTRADKDQ
SGPRHQGLPRGQNPTSPSVPPVAAPAGDNGGRTNQQHQHQQPIPDEEPRS
HPYPFFPSPVLASSSGPPSHPEDQQHQQHQHQQHRRVDYYTAACTTAEVA
PVVSSRQDFAPAAGAIGSRWIPHPPQNAAAAAAAAAPPRRQSEWTPRFDP
PPMAAAAAAAAADPRAVMALHQNPPSLDPWAFLQQQQQQRRRQHPQQQPE
ISLLSVAAAVGPGGSSRRQQFTGYHQDVAPHHHIVRDQYHRDYAAVTAAA
AAAAAAAAAHPAASATRPVPAHAARGNVHYPPQQHEYRGQHDERQYSYPP
QHAYHHHRQQQEQLKYYQEQEQRQRQRELQQQKVDKPSINNLWSLIPGTL
ERDGGGTRPGNNGSSSSSAAPTHSQQQTGGAGGYDNDRWFAPDVHPPLTD
MARRHRARALARLRARRRALAEAAATAAAAA
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mRNA from alignment at E-fasciculatus_F_contig12366:2044..4048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12366.1823.1 ID=mRNA_E-fasciculatus_F_contig12366.1823.1|Name=mRNA_E-fasciculatus_F_contig12366.1823.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2005bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12366:2044..4048+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCGACTCTTAGCCCTAAACCGTTCACAGCAGGCTCCGCTCCGTCAGCAA
CTCGAGAGCGAGCGAGCGAGTTAAGCGAACGACGAGAGGGCGCGCGCGCG
CGAGAGAGAGAGAAAACGAGCGAGAGACGCGGGAAGGACGGCCGAGTGCA
CGAGCTCATCCCTCCGGTGTGTCTTGTTCTGGCGTGGCGGAAGGGCAATC
CGTGATCTCCCTTTTCGTCCTCAGAAACGATACCCGACCAAAAAAAAGAA
GACAGAACGCAGCGTCGTGGTATCGCCATATATATATCATGCCAAAGGTC
ACGGACGAAGAGCTTAACGGAGCAGCGGCCGCCTTGCTTGGTCTGCACGC
GAGGAACGCCAGGTGTGTGTGTGTGTGTGTGTGTATGTGCGTGGCTTGTG
ATCACTTGCATGTTGTCGACGAGCCCCTCGCGCGAACGCGCAGCAGCGGA
GCGGTAGGATGACGGGTTGCGTGCCTCGTTCTGAAATGTGTTGACAGAAT
CAGCGAAAAATCCGAGAGCGGCGTCATGCTCTTTCTTGGGTTGTTTGTTT
GTGCTGGCACCCGTGGACGACATGTAGTAGCCTCCTCCTCTCGCGAGTGC
TCTCAACGCTCACCCTCTCCCTCTCCCCCCTCCCAGCAGCAAGGAAGTTT
CGCCGGCAGTCGCCCCCGCGTCTAGGCCAGCACCGGTGGTGACCCGGGCG
GACAAGGACCAATCCGGGCCCCGGCACCAGGGGTTGCCAAGAGGCCAAAA
TCCGACCTCACCGTCCGTGCCGCCAGTCGCAGCACCAGCAGGGGACAACG
GGGGGCGGACCAACCAGCAGCACCAGCACCAGCAGCCGATCCCGGACGAG
GAGCCACGTTCACACCCCTACCCGTTCTTTCCGTCGCCGGTGCTCGCCTC
GAGCTCTGGCCCGCCGTCGCACCCGGAGGATCAGCAGCACCAGCAGCACC
AGCACCAGCAGCACCGCCGCGTGGACTACTACACTGCTGCTTGTACTACC
GCAGAAGTAGCCCCTGTAGTTTCAAGCCGGCAAGACTTTGCTCCAGCAGC
TGGAGCAATAGGATCACGATGGATACCGCACCCTCCCCAGAACGCCGCCG
CCGCCGCCGCCGCCGCCGCTCCACCTCGGCGACAGAGTGAGTGGACACCT
CGCTTCGATCCGCCGCCGATGGCGGCGGCGGCGGCAGCGGCGGCTGCGGA
TCCGCGGGCCGTCATGGCACTCCACCAAAACCCGCCCTCCTTGGATCCGT
GGGCGTTCCTTCAGCAGCAGCAGCAACAGCGGCGGCGGCAGCACCCGCAG
CAACAACCCGAAATTTCCTTGCTCTCCGTTGCCGCCGCCGTTGGTCCCGG
GGGTAGCAGCAGGAGACAGCAATTTACCGGGTACCACCAGGACGTTGCTC
CGCACCACCACATCGTTCGGGATCAATACCACCGCGACTACGCGGCTGTA
ACGGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCCGCTCATCCCGCTGC
TTCCGCGACCCGTCCTGTTCCGGCCCACGCCGCCCGCGGAAACGTCCACT
ACCCGCCGCAGCAGCACGAGTACCGTGGGCAGCACGACGAGCGGCAGTAC
TCGTACCCGCCACAGCACGCTTACCACCACCACCGCCAGCAGCAGGAGCA
GCTCAAGTACTATCAAGAGCAAGAGCAACGGCAACGGCAACGGGAGCTGC
AACAACAGAAGGTGGACAAGCCGTCCATCAACAACCTCTGGAGCCTGATC
CCGGGGACGCTCGAGAGGGACGGCGGTGGTACCCGACCGGGTAACAACGG
CAGCAGCAGCAGCAGCGCAGCTCCGACCCACTCCCAGCAGCAAACCGGCG
GCGCCGGCGGCTACGACAACGACCGGTGGTTCGCCCCGGACGTCCACCCC
CCCCTCACCGACATGGCCCGCAGGCACCGCGCGAGAGCGCTCGCCCGCCT
CAGGGCGCGCCGGCGGGCCCTGGCGGAGGCGGCGGCGACAGCGGCGGCGG
CGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12366:2044..4048+

>mRNA_E-fasciculatus_F_contig12366.1823.1 ID=mRNA_E-fasciculatus_F_contig12366.1823.1|Name=mRNA_E-fasciculatus_F_contig12366.1823.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2886bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12366:2044..4048+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAAAGGTCACGGACGAAGAGCTTAACGGAGCAGCGGCCGCCTTGCT
TGGTCTGCACGCGAGGAACGCCAGATGCCAAAGGTCACGGACGAAGAGCT
TAACGGAGCAGCGGCCGCCTTGCTTGGTCTGCACGCGAGGAACGCCAGCA
GCAAGGAAGTTTCGCCGGCAGTCGCCCCCGCGTCTAGGCCAGCACCGGTG
GTGACCCGGGCGGACAAGGACCAATCCGGGCCCCGGCACCAGGGGTTGCC
AAGAGGCCAAAATCCGACCTCACCGTCCGTGCCGCCAGTCGCAGCACCAG
CAGGGGACAACGGGGGGCGGACCAACCAGCAGCACCAGCACCAGCAGCCG
ATCCCGGACGAGGAGCCACGTTCACACCCCTACCCGTTCTTTCCGTCGCC
GGTGCTCGCCTCGAGCTCTGGCCCGCCGTCGCACCCGGAGGATCAGCAGC
ACCAGCAGCACCAGCACCAGCAGCACCGCCGCGTGGACTACTACACTGCT
GCTTGTACTACCGCAGAAGTAGCCCCTGTAGTTTCAAGCCGGCAAGACTT
TGCTCCAGCAGCTGGAGCAATAGGATCACGATGGATACCGCACCCTCCCC
AGAACGCCGCCGCCGCCGCCGCCGCCGCCGCTCCACCTCGGCGACAGAGT
GAGTGGACACCTCGCTTCGATCCGCCGCCGATGGCGGCGGCGGCGGCAGC
GGCGGCTGCGGATCCGCGGGCCGTCATGGCACTCCACCAAAACCCGCCCT
CCTTGGATCCGTGGGCGTTCCTTCAGCAGCAGCAGCAACAGCGGCGGCGG
CAGCACCCGCAGCAACAACCCGAAATTTCCTTGCTCTCCGTTGCCGCCGC
CGTTGGTCCCGGGGGTAGCAGCAGGAGACAGCAATTTACCGGGTACCACC
AGGACGTTGCTCCGCACCACCACATCGTTCGGGATCAATACCACCGCGAC
TACGCGGCTGTAACGGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCCGC
TCATCCCGCTGCTTCCGCGACCCGTCCTGTTCCGGCCCACGCCGCCCGCG
GAAACGTCCACTACCCGCCGCAGCAGCACGAGTACCGTGGGCAGCACGAC
GAGCGGCAGTACTCGTACCCGCCACAGCACGCTTACCACCACCACCGCCA
GCAGCAGGAGCAGCTCAAGTACTATCAAGAGCAAGAGCAACGGCAACGGC
AACGGGAGCTGCAACAACAGAAGGTGGACAAGCCGTCCATCAACAACCTC
TGGAGCCTGATCCCGGGGACGCTCGAGAGGGACGGCGGTGGTACCCGACC
GGGTAACAACGGCAGCAGCAGCAGCAGCGCAGCTCCGACCCACTCCCAGC
AGCAAACCGGCGGCGCCGGCGGCTACGACAACGACCGGTGGTTCGCCCCG
GACGTCCACCCCCCCCTCACCGACATGGCCCGCAGGCACCGCGCGAGAGC
GCTCGCCCGCCTCAGGGCGCGCCGGCGGGCCCTGGCGGAGGCGGCGGCGA
CAGCGGCGGCGGCGGCGCAGCAAGGAAGTTTCGCCGGCAGTCGCCCCCGC
GTCTAGGCCAGCACCGGTGGTGACCCGGGCGGACAAGGACCAATCCGGGC
CCCGGCACCAGGGGTTGCCAAGAGGCCAAAATCCGACCTCACCGTCCGTG
CCGCCAGTCGCAGCACCAGCAGGGGACAACGGGGGGCGGACCAACCAGCA
GCACCAGCACCAGCAGCCGATCCCGGACGAGGAGCCACGTTCACACCCCT
ACCCGTTCTTTCCGTCGCCGGTGCTCGCCTCGAGCTCTGGCCCGCCGTCG
CACCCGGAGGATCAGCAGCACCAGCAGCACCAGCACCAGCAGCACCGCCG
CGTGGACTACTACACTGCTGCTTGTACTACCGCAGAAGTAGCCCCTGTAG
TTTCAAGCCGGCAAGACTTTGCTCCAGCAGCTGGAGCAATAGGATCACGA
TGGATACCGCACCCTCCCCAGAACGCCGCCGCCGCCGCCGCCGCCGCCGC
TCCACCTCGGCGACAGAGTGAGTGGACACCTCGCTTCGATCCGCCGCCGA
TGGCGGCGGCGGCGGCAGCGGCGGCTGCGGATCCGCGGGCCGTCATGGCA
CTCCACCAAAACCCGCCCTCCTTGGATCCGTGGGCGTTCCTTCAGCAGCA
GCAGCAACAGCGGCGGCGGCAGCACCCGCAGCAACAACCCGAAATTTCCT
TGCTCTCCGTTGCCGCCGCCGTTGGTCCCGGGGGTAGCAGCAGGAGACAG
CAATTTACCGGGTACCACCAGGACGTTGCTCCGCACCACCACATCGTTCG
GGATCAATACCACCGCGACTACGCGGCTGTAACGGCTGCTGCTGCTGCTG
CTGCTGCTGCCGCTGCCGCTCATCCCGCTGCTTCCGCGACCCGTCCTGTT
CCGGCCCACGCCGCCCGCGGAAACGTCCACTACCCGCCGCAGCAGCACGA
GTACCGTGGGCAGCACGACGAGCGGCAGTACTCGTACCCGCCACAGCACG
CTTACCACCACCACCGCCAGCAGCAGGAGCAGCTCAAGTACTATCAAGAG
CAAGAGCAACGGCAACGGCAACGGGAGCTGCAACAACAGAAGGTGGACAA
GCCGTCCATCAACAACCTCTGGAGCCTGATCCCGGGGACGCTCGAGAGGG
ACGGCGGTGGTACCCGACCGGGTAACAACGGCAGCAGCAGCAGCAGCGCA
GCTCCGACCCACTCCCAGCAGCAAACCGGCGGCGCCGGCGGCTACGACAA
CGACCGGTGGTTCGCCCCGGACGTCCACCCCCCCCTCACCGACATGGCCC
GCAGGCACCGCGCGAGAGCGCTCGCCCGCCTCAGGGCGCGCCGGCGGGCC
CTGGCGGAGGCGGCGGCGACAGCGGCGGCGGCGGCG
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