mRNA_E-fasciculatus_F_contig1236.1817.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1236.1817.1
Unique NamemRNA_E-fasciculatus_F_contig1236.1817.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1236.1817.1 vs. uniprot
Match: D7FJV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV9_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.680e-80
Identity = 129/138 (93.48%), Postives = 131/138 (94.93%), Query Frame = 1 
Query:    1 MSATTPREHVEFLIAAMDPARANDLSSVIKCLLLHYTGPAADELDIFLGGRIGGKEIQELLEMSLEALDHVHTAHVPSILMLQWLLGRAPHLRSLLLQGGVVRRAFSRLERAEAKGFGPGERAMQYAALFLATGLMFE 414
            M+ATTP+EHVEFLIAAMDPARANDLSSVIKCLLLHYTGP ADELDI LGGRIGG EIQELLEMSLEALDH HTAHVPSILMLQWLLGRAPHLRSLLLQGGVV RAF RLERAEAKGFGPGERAMQYA LFLATGLMFE
Sbjct:  310 MAATTPKEHVEFLIAAMDPARANDLSSVIKCLLLHYTGPVADELDILLGGRIGGMEIQELLEMSLEALDHAHTAHVPSILMLQWLLGRAPHLRSLLLQGGVVSRAFRRLERAEAKGFGPGERAMQYATLFLATGLMFE 447
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1236.1817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJV9_ECTSI1.680e-8093.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1236contigE-fasciculatus_F_contig1236:941..2881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size600
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1236.1817.1prot_E-fasciculatus_F_contig1236.1817.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1236 941..2698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927742.4326797-CDS-E-fasciculatus_F_contig1236:940..10301622927742.4326797-CDS-E-fasciculatus_F_contig1236:940..1030Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1236 941..1030 +
1695995675.395449-CDS-E-fasciculatus_F_contig1236:940..10301695995675.395449-CDS-E-fasciculatus_F_contig1236:940..1030Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1236 941..1030 +
1622927742.449255-CDS-E-fasciculatus_F_contig1236:1541..16191622927742.449255-CDS-E-fasciculatus_F_contig1236:1541..1619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1236 1542..1619 +
1695995675.403402-CDS-E-fasciculatus_F_contig1236:1541..16191695995675.403402-CDS-E-fasciculatus_F_contig1236:1541..1619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1236 1542..1619 +
1622927742.4680574-CDS-E-fasciculatus_F_contig1236:2449..26981622927742.4680574-CDS-E-fasciculatus_F_contig1236:2449..2698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1236 2450..2698 +
1695995675.414861-CDS-E-fasciculatus_F_contig1236:2449..26981695995675.414861-CDS-E-fasciculatus_F_contig1236:2449..2698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1236 2450..2698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927742.4802082-UTR-E-fasciculatus_F_contig1236:2698..28811622927742.4802082-UTR-E-fasciculatus_F_contig1236:2698..2881Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1236 2699..2881 +
1695995675.4229228-UTR-E-fasciculatus_F_contig1236:2698..28811695995675.4229228-UTR-E-fasciculatus_F_contig1236:2698..2881Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1236 2699..2881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1236.1817.1

>prot_E-fasciculatus_F_contig1236.1817.1 ID=prot_E-fasciculatus_F_contig1236.1817.1|Name=mRNA_E-fasciculatus_F_contig1236.1817.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=139bp
MSATTPREHVEFLIAAMDPARANDLSSVIKCLLLHYTGPAADELDIFLGG
RIGGKEIQELLEMSLEALDHVHTAHVPSILMLQWLLGRAPHLRSLLLQGG
VVRRAFSRLERAEAKGFGPGERAMQYAALFLATGLMFE*
back to top

mRNA from alignment at E-fasciculatus_F_contig1236:941..2881+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1236.1817.1 ID=mRNA_E-fasciculatus_F_contig1236.1817.1|Name=mRNA_E-fasciculatus_F_contig1236.1817.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1941bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1236:941..2881+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGGCGACCACGCCCAGGGAGCACGTTGAGTTTCTCATCGCGGCAAT
GGATCCCGCTAGGGCCAACGACCTCTCCTCCGTAATTAAGGTATGCCTTC
AACTCGTGCACGGCTCCTGCGAATCCTTGTTCCCAACCGTTGGATGTGGG
GTGTACCGTGGCCGTTGTTGCTGCTCGCTGATCGTGATGCGTACGGTGTC
TACGCGACCTTTCAGGTAGCCCTATGATCAACTTCTCGTTTTGGTTGGTC
AGAGAACAAAATTGTTCTGGAGAAAACCGTTGTCCTGTGCTTGGTGGCAG
TACGTGCGTACCTTCTTGTTTATCCTCTACGACACGGCCACCACCACCGA
GGGAGGTGTAGTCGCGGAATTAATTGAGTTGTTGCTTTCGATTATTACGA
TAGTGATAGTGCTACGGCTGTCGTCAGCATCATGTTTCGAGGGTTGGCGT
TTTTCTTCGGCGATCTTCGTACCTGGCTCAACGCCACGCGCTGCGCATGC
AACTTTCAAGAGCAGCGTTGCAAGGCGATACACCTGGTCATCAGTATTCT
CCCCTACACAATGGTTACACAATTTTTGGCTGTATCCTTGCTTGTTTGCA
GTGTCTGTTGCTGCACTACACTGGTCCTGCGGCGGACGAGCTCGACATCT
TCCTCGGAGGAAGAATTGGCGGAAAGGAGGTGTGTCGAAACATTTGCGAA
TTCAGAGGCAATTGTATTTAACAGCCACAATAGGTGCCATATCGGACTTA
AAAGAAAGCGGCAACGTCAGCACAATGCCGCAGTTTTGTTTCGTATCAAC
TTCTTGAAATGTTGCTCGAAAGCCAAATAAGGAAGAGATCTGCGGGTAAT
CCATGCAGCTGCCCTTTTTTTCGCTTGAACTGCCTTTTTTCCCACGCTAC
TTGCAGCAGAGAAGACTCTGCCATTCACGTACTTGGTCGGTGGCGTATTT
CCGTACCGTTTACTTTCCCCGAGGTTGAAACCAGGACACGAGCGATTTCA
TGCGGCTACGAAAGTCGACAGGCGACCCTTTGCAAATGAATGCAAACAAC
AGACATTTCGCGGTCCGTTTCTGAAATTCGGGCTCGACTGCATCCAAGGC
CACACTGCTGCCACCCTTGACATCTATTTAGGTTGCCATCTAAGCTACAT
ATATACCTGCAAGCTCGGCCGGCCGATCAGTTTCGAGGCCTGTGGTTGGT
TTCACGGTCCCAACCCTCCACTATGCGGTACTTTCCGCTTTTGAGGAGCA
TCTCGCGTCTTTGCCCCCTCGCGGAACGCATGCGTTGCAGCAATCCACGT
TGGGTTCAATGTCTTCCCAGTCGATGTGGAGAACCTCGCGGTTCGTCTTG
GCCTTTTGTTAGACACGAGAGGCTTTATGTTTTACAGCACATGCACGGAG
GTGACAACCAAATAGTCCCTTCCACACCCCAATCAACAAGAGAAAACCCG
CGACTTCAAACTTATTTCCAGACTGAATTACAGCTCCCCTCCCCCCACCG
ACCAATCAGATTCAAGAGCTGCTGGAGATGAGCTTGGAGGCGCTGGACCA
CGTGCACACCGCCCATGTCCCCTCGATTCTCATGCTGCAGTGGTTGCTCG
GCAGGGCTCCGCATCTTCGGTCTCTGCTGCTTCAAGGAGGCGTGGTCCGT
CGAGCGTTTAGTCGGCTGGAGAGGGCCGAGGCCAAGGGGTTCGGGCCCGG
GGAGCGAGCCATGCAGTACGCCGCGCTGTTTCTCGCCACAGGGCTAATGT
TCGAGTGAATGAGAGCCGCGCTGGAAGCCACGACATTGCCTGTCTGCGCC
CGCCCGCGGTTGGCGTTGTGACCGCCGAGTTGCGATTTTGGTCGGACGGG
GCTGACGCGAAACGCTTTTTTTGGCTGTATTGAATGAAAACAAGGGTCGT
TGGCTTGTACCATTGCGCAACGCCGGGATGTTGCTTGGCCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1236:941..2881+

>mRNA_E-fasciculatus_F_contig1236.1817.1 ID=mRNA_E-fasciculatus_F_contig1236.1817.1|Name=mRNA_E-fasciculatus_F_contig1236.1817.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1236:941..2881+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGGCGACCACGCCCAGGGAGCACGTTGAGTTTCTCATCGCGGCAAT
GGATCCCGCTAGGGCCAACGACCTCTCCTCCGTAATTAAGATGTCGGCGA
CCACGCCCAGGGAGCACGTTGAGTTTCTCATCGCGGCAATGGATCCCGCT
AGGGCCAACGACCTCTCCTCCGTAATTAAGTGTCTGTTGCTGCACTACAC
TGGTCCTGCGGCGGACGAGCTCGACATCTTCCTCGGAGGAAGAATTGGCG
GAAAGGAGTGTCTGTTGCTGCACTACACTGGTCCTGCGGCGGACGAGCTC
GACATCTTCCTCGGAGGAAGAATTGGCGGAAAGGAGATTCAAGAGCTGCT
GGAGATGAGCTTGGAGGCGCTGGACCACGTGCACACCGCCCATGTCCCCT
CGATTCTCATGCTGCAGTGGTTGCTCGGCAGGGCTCCGCATCTTCGGTCT
CTGCTGCTTCAAGGAGGCGTGGTCCGTCGAGCGTTTAGTCGGCTGGAGAG
GGCCGAGGCCAAGGGGTTCGGGCCCGGGGAGCGAGCCATGCAGTACGCCG
CGCTGTTTCTCGCCACAGGGCTAATGTTCGAGTGAATTCAAGAGCTGCTG
GAGATGAGCTTGGAGGCGCTGGACCACGTGCACACCGCCCATGTCCCCTC
GATTCTCATGCTGCAGTGGTTGCTCGGCAGGGCTCCGCATCTTCGGTCTC
TGCTGCTTCAAGGAGGCGTGGTCCGTCGAGCGTTTAGTCGGCTGGAGAGG
GCCGAGGCCAAGGGGTTCGGGCCCGGGGAGCGAGCCATGCAGTACGCCGC
GCTGTTTCTCGCCACAGGGCTAATGTTCGAGTGA
back to top