mRNA_E-fasciculatus_F_contig12358.1815.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: D7FZJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ4_ECTSI) HSP 1 Score: 222 bits (566), Expect = 8.450e-63 Identity = 107/120 (89.17%), Postives = 110/120 (91.67%), Query Frame = 3
Query: 507 GGKRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPALAFRQRHEGGDEQISRQMRRHFDFRLSREEERLLGKGGGAADEEALRAYLLLSQ 866
G RWGDPNNP++GDVHFYDYGMDCED DGYP A FVSEHGVQSFPS+ASYKQV NPGD WLGSPALAFRQRHEGGDEQISRQMRRHFDFRLSREEERLLGK GGAA EEALR YLLLSQ
Sbjct: 771 GNARWGDPNNPKYGDVHFYDYGMDCEDSDGYPYAKFVSEHGVQSFPSVASYKQVINPGDMWLGSPALAFRQRHEGGDEQISRQMRRHFDFRLSREEERLLGKEGGAAGEEALRGYLLLSQ 890
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: E1Z448_CHLVA (Beta-mannosidase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z448_CHLVA) HSP 1 Score: 100 bits (248), Expect = 7.000e-20 Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 3
Query: 504 PGGKRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPALAFRQRHEGGDEQISRQMRRHF 770
P KRWGD +PRFGD+HFY+Y D DP YP A FVSE G SFPS A+YK++T P + L SP AFR RH G +++ QM RHF
Sbjct: 563 PYAKRWGDVADPRFGDIHFYNYRADAWDPATYPPAKFVSEFGFMSFPSFAAYKKMTAPDEWRLDSPMTAFRMRHANGMQELLAQMGRHF 651
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: A0A7S1AFK1_NOCSC (Beta-mannosidase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AFK1_NOCSC) HSP 1 Score: 97.1 bits (240), Expect = 7.400e-19 Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 3
Query: 513 KRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPALAFRQRHEGGDEQISRQMRRHF 770
KRWGD +N +GDVH+Y+YG DCEDP YP A FVSEHG QS+PS + V P D S + FRQRH G+ Q+ M RHF
Sbjct: 542 KRWGDVSNVSYGDVHYYNYGADCEDPTTYPKARFVSEHGFQSWPSYVELEHVMAPEDMRQDSDFVIFRQRHPHGNSQLVSMMNRHF 627
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: A0A2V0PGB8_9CHLO (Beta-mannosidase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGB8_9CHLO) HSP 1 Score: 97.1 bits (240), Expect = 7.790e-19 Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 3
Query: 513 KRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPALAFRQRHEGGDEQISRQMRRHF 770
KRWG+P +PR GDVHFYDY DC+DP YP A F+SE+G QS+P+ A+Y T P D +GS FRQRH G ++ Q+ R F
Sbjct: 603 KRWGNPQDPRHGDVHFYDYTRDCQDPGHYPRARFISEYGWQSYPAWATYSAATAPEDWSVGSRMHEFRQRHPNGTPELIAQLDRRF 688
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: A0A2P6TX02_CHLSO (Beta-mannosidase isoform B n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TX02_CHLSO) HSP 1 Score: 97.1 bits (240), Expect = 8.390e-19 Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 3
Query: 495 ATGPGGKRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPALAFRQRHEGGDEQISRQMRRHF 770
++ P KRWGD +PRFGDVHFYDY D D YP A FVSE+G S PS A+Y +VT+P D L +P A+R RH G +++ QM+RHF
Sbjct: 910 SSAPYAKRWGDVADPRFGDVHFYDYQGDAFDRATYPPAKFVSEYGFISLPSFAAYLRVTSPEDWSLSAPMTAYRMRHANGLQEVEAQMQRHF 1001
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: A0A7R9V1A8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V1A8_9CHLO) HSP 1 Score: 91.7 bits (226), Expect = 1.310e-18 Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 3
Query: 492 GATGPGG----KRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPALAF---RQRHEGGDEQISRQMRRHFDFRLSREEERLLGKGGGAADEEALRAYLLLSQ 866
G GPGG +RWGDP +PR+GD+HFY+Y DC DP+ YP A V+E G QSF S+ + + PG W P F RQRH+GG+ ++ Q+ RHF RL + + G AD ++ L+Q
Sbjct: 4 GTPGPGGALPLRRWGDPQDPRYGDIHFYNYTGDCMDPNMYPRAKMVTEFGFQSFASLGAVAPYSEPGVDW--GPFTHFMRSRQRHDGGEGELLSQLGRHF--RLPAKWTDGTAQRAGGADTRQFAHWIYLTQ 131
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: A0A383VVY0_TETOB (Beta-mannosidase (Fragment) n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VVY0_TETOB) HSP 1 Score: 94.0 bits (232), Expect = 8.800e-18 Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 3
Query: 513 KRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPALAFRQRHEGGDEQISRQMRRHF 770
KRWG+P NP++GDVHFYDY +DC+D YP A F+SE+G QS+PS A+Y T P D + + FRQRH G ++ Q++R F
Sbjct: 532 KRWGNPQNPKYGDVHFYDYKIDCQDWRTYPAARFISEYGWQSYPSWATYSAATAPQDWAVVADMTEFRQRHPNGTVELLAQLQRRF 617
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: A0A0D2MF23_9CHLO (Beta-mannosidase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MF23_9CHLO) HSP 1 Score: 93.2 bits (230), Expect = 1.580e-17 Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 178 VRRLSAHPSVVCWGGNNEVEQALGWFNESSSEPGRQAYERDYVTLFVDTIGNAVRSVDPFTPWVDSSPSNGMIGTA 405
VRRLS+HPS+V WGGNNEVE ++ W+ ++ S G Y DY LFVDTIG VR + P TP+VDSSPSNGM+ A
Sbjct: 547 VRRLSSHPSIVIWGGNNEVEASMEWYEDTRSNLG--LYAVDYARLFVDTIGGVVRRMLPSTPYVDSSPSNGMVSPA 620
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: A0A024GR73_9STRA (Beta-mannosidase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR73_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.240e-16 Identity = 52/123 (42.28%), Postives = 66/123 (53.66%), Query Frame = 3
Query: 513 KRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPAL----AFRQRHEGGDEQISRQMRRHFDFRLSREEERLLGKGGGAADEEALRAYLL-LSQ 866
KRW + FGD+HFYDY DC DP YP A F+SE G QSFPS S K V++ D W + FR+RHE G Q+ +Q+ RHFD R + G G ++ L +L LSQ
Sbjct: 521 KRWKHTGDSHFGDIHFYDYECDCNDPKVYPQARFISEFGFQSFPSRESLKAVSDKND-WKSFSSFWSMFRFRERHENGQAQVLKQISRHFDTRFLKHMNDFGGNWNGTEYQQFLMDTILYLSQ 642
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Match: A0A7J7QH35_9CHLO (Beta-mannosidase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QH35_9CHLO) HSP 1 Score: 89.4 bits (220), Expect = 3.290e-16 Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 3
Query: 513 KRWGDPNNPRFGDVHFYDYGMDCEDPDGYPDAMFVSEHGVQSFPSMASYKQVTNPGDRWLGSPALAFRQRHEGGDEQISRQMRRHF 770
KRWG+P +PR+GDVHFYDY DC+D YP A F+SE+G QS+PS A+Y T D + FRQRH G ++ Q++R F
Sbjct: 751 KRWGNPQHPRYGDVHFYDYKHDCQDWRTYPAARFISEYGWQSYPSWATYSAATAAEDWAAAADMTEFRQRHPNGTVELLAQLQRRF 836 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12358.1815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12358.1815.1 >prot_E-fasciculatus_F_contig12358.1815.1 ID=prot_E-fasciculatus_F_contig12358.1815.1|Name=mRNA_E-fasciculatus_F_contig12358.1815.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=231bp GEDRILSPLLLEETAGEAKGNDAVPSPVSEGPAAMGRGGEDGNLSPIILEback to top mRNA from alignment at E-fasciculatus_F_contig12358:636..3658- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12358.1815.1 ID=mRNA_E-fasciculatus_F_contig12358.1815.1|Name=mRNA_E-fasciculatus_F_contig12358.1815.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3023bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12358:636..3658- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12358:636..3658- >mRNA_E-fasciculatus_F_contig12358.1815.1 ID=mRNA_E-fasciculatus_F_contig12358.1815.1|Name=mRNA_E-fasciculatus_F_contig12358.1815.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1386bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12358:636..3658- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |