mRNA_E-fasciculatus_F_contig12341.1809.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12341.1809.1
Unique NamemRNA_E-fasciculatus_F_contig12341.1809.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.050e-37
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:   13 RERDSLFRMPHCDGETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHVRVGCL 222
            +ERDSLFRMPHCDG TPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPH   G +
Sbjct:  422 KERDSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHEDPGSV 491
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.310e-23
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   22 DSLFRMPHCDGETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDP 195
            D+L+ MPH DG+ P WPT   +E LR+LN+CPSVFTLEPGEFVHINKGRLHAFRK+ P
Sbjct:  154 DALYGMPHNDGQKPSWPTPSQIESLRDLNYCPSVFTLEPGEFVHINKGRLHAFRKKIP 211
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.780e-20
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   22 DSLFRMPHCDGETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLP 201
            D+L+  PH  GE PPWPT+  ++ LR   +CPSVFTLEPG++VHINKGRLHAFRK  P P
Sbjct:  743 DALYGKPHDAGEKPPWPTETQIDELRRRGYCPSVFTLEPGDYVHINKGRLHAFRKRSPPP 802
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A7S2NZI7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZI7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.670e-16
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   13 RERDSLFRMPHCDG--ETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 186
            R  D+L+ +PH DG  + P WPT + V R RE+N+CPSVF L+P + VHINKGRLHAFRK
Sbjct:   14 RSYDALYGLPHGDGYVDKPEWPTHDVVSRWREMNYCPSVFILKPNQHVHINKGRLHAFRK 73
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A7S1ZIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.340e-16
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   22 DSLFRMPHCDG--ETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHVRVGC 219
            D+L+ +PH DG  E P WP  E++ER R++N+ PSVF L+PG+ VHINKGRLHAFRK  P    +  C
Sbjct:  805 DALYGLPHEDGCGERPMWPDCESIERCRKMNYYPSVFILKPGQHVHINKGRLHAFRKLSPTSLPQTDC 872
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A448ZRZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.340e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   22 DSLFRMPHCDG--ETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 186
            D L+ MPH DG  + PPWPT + +E  R++ +CPSV  LEPG+ VHINKGRLHAFRK
Sbjct:  739 DGLYSMPHGDGLGKKPPWPTKDMLEDCRKMGYCPSVLILEPGDLVHINKGRLHAFRK 795
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A7S4EEL1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.940e-16
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   22 DSLFRMPHCDG--ETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 186
            D L+ +PH DG  + PPWP+++ VE  + + +CPS+F LEPG+ VHINKGRLHAFRK
Sbjct:  724 DGLYSVPHGDGLGKKPPWPSNDMVEECKTMGYCPSIFILEPGDLVHINKGRLHAFRK 780
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A7S3Q867_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q867_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.100e-16
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    7 ERRER----DSLFRMPHCDGETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHVRVGC 219
            +RR++    D+L+ +PH DG+ P WP  EA++   ELN+ P VF L+PG+F+HINKGRLHAFRK    P     C
Sbjct:  604 DRRQKNIHYDALYGLPHHDGKKPLWPDHEAIKNCDELNYYPCVFILKPGQFLHINKGRLHAFRKAGRNPVDPKDC 678
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A1E7FK00_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK00_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.220e-13
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   22 DSLFRMPHCDG--ETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 186
            + L+ +PH DG    P WPT + VE  + + +CPS+ TL PGE +HINKGRLHAFRK
Sbjct:  716 EGLYSVPHGDGLGSKPKWPTMDMVEECKRMGYCPSLLTLGPGELIHINKGRLHAFRK 772
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BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Match: A0A7S2YQT9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQT9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.230e-13
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   10 RRERDSLFRMPHCDGETPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 186
            R E D+L+  PH +G+ P WPT+E V+   ++ + P+V  L PG+ VHINKGRLHAFRK
Sbjct:  350 RGEYDALYNFPHENGKKPDWPTNETVQAWEDMGYEPAVLILGPGQHVHINKGRLHAFRK 408
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12341.1809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LCL4_ECTSI1.050e-3790.00ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A7S2DKI0_9STRA2.310e-2372.41Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S2SQY1_9STRA3.780e-2063.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2NZI7_9STRA1.670e-1660.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1ZIK7_9STRA2.340e-1654.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A448ZRZ6_9STRA4.340e-1661.40Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EEL1_9STRA5.940e-1657.89Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S3Q867_9STRA8.100e-1649.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1E7FK00_9STRA2.220e-1354.39Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2YQT9_9STRA2.230e-1352.54Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12341contigE-fasciculatus_F_contig12341:2818..3726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue9.5e-33
Seed eggNOG ortholog2880.D8LCL4
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927741.3568468-CDS-E-fasciculatus_F_contig12341:2817..29191622927741.3568468-CDS-E-fasciculatus_F_contig12341:2817..2919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12341 2818..2919 +
1695995674.83954-CDS-E-fasciculatus_F_contig12341:2817..29191695995674.83954-CDS-E-fasciculatus_F_contig12341:2817..2919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12341 2818..2919 +
1622927741.3686993-CDS-E-fasciculatus_F_contig12341:3600..37261622927741.3686993-CDS-E-fasciculatus_F_contig12341:3600..3726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12341 3601..3726 +
1695995674.8499079-CDS-E-fasciculatus_F_contig12341:3600..37261695995674.8499079-CDS-E-fasciculatus_F_contig12341:3600..3726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12341 3601..3726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12341.1809.1prot_E-fasciculatus_F_contig12341.1809.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12341 2818..3726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12341.1809.1

>prot_E-fasciculatus_F_contig12341.1809.1 ID=prot_E-fasciculatus_F_contig12341.1809.1|Name=mRNA_E-fasciculatus_F_contig12341.1809.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
AAERRERDSLFRMPHCDGETPPWPTDEAVERLRELNFCPSVFTLEPGEFV
HINKGRLHAFRKEDPLPHVRVGCLL*
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mRNA from alignment at E-fasciculatus_F_contig12341:2818..3726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12341.1809.1 ID=mRNA_E-fasciculatus_F_contig12341.1809.1|Name=mRNA_E-fasciculatus_F_contig12341.1809.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=909bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12341:2818..3726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCCGAGAGGAGGGAGAGAGACAGCTTGTTCAGGATGCCGCACTGTGA
CGGGGAGACGCCTCCGTGGCCTACGGACGAGGCTGTCGAGCGGCTCCGCG
AGGTCAGTAGGAGAAAAGGGGGGTTGCCGCCTGCGACCCACGTATGGACA
CAAGCTCCCCCCCAAGCAAGCGTGTCAGGTTACATGCTAGAGCAGTAGCA
GTACTAGTACAACGCGGGGATGGGTAAACACTACAGCAAGCACCCTCCAC
ACTAGCTTCAGGGTGCATGTATCACGGAAGGTCACGGGTAGGGAAAGGGG
GCCGTTTTGCGGGATGGTTATGCGGTGGGGATGGGGTGGAGGAGGGTACA
CCGGACTCATTGGTCGTCAGGGTGCGGTAGGATTATCACCTGTGAACCGA
TTGATTTTGTGTGTGTGTGTGTGTGTGTGTTTCGTGTGCGCGTTTTAGTG
TTGTTGTCTTGTGTACTTTATATCATTTTGCGGTACAGGCTGCTTGTCTT
GACTGCCTAAACTTTCCCCCGAATTTCGGTATGGTATATATGTTCTGTCC
GTGCCATTGTTTGCTTGACGATATATCGCTCTCAGTTCGTACGAAGCGGT
TGAGTCGTTCAGCGGCTCTGACCTGGGTCACATCCCCCTCTTCGCACACC
TGCCTGCGTGTCCCTCTCACACAAGGCACGGCACCCTCCTCGCCGTCTAC
GTTTTTTGTTGCCTCGAAACGACCGTCCGTCCGTGCTCATTTTGTTTGTT
TTTTCCGTTGCCCCCTCTCCGCTCTGGCCCTAGCTGAACTTCTGCCCCAG
CGTATTCACGCTCGAGCCGGGGGAGTTCGTCCATATCAACAAGGGGCGTC
TTCACGCCTTCCGGAAGGAGGACCCTCTGCCGCACGTGAGGGTCGGCTGT
CTACTCTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12341:2818..3726+

>mRNA_E-fasciculatus_F_contig12341.1809.1 ID=mRNA_E-fasciculatus_F_contig12341.1809.1|Name=mRNA_E-fasciculatus_F_contig12341.1809.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12341:2818..3726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCCGAGAGGAGGGAGAGAGACAGCTTGTTCAGGATGCCGCACTGTGA
CGGGGAGACGCCTCCGTGGCCTACGGACGAGGCTGTCGAGCGGCTCCGCG
AGGCGGCCGAGAGGAGGGAGAGAGACAGCTTGTTCAGGATGCCGCACTGT
GACGGGGAGACGCCTCCGTGGCCTACGGACGAGGCTGTCGAGCGGCTCCG
CGAGCTGAACTTCTGCCCCAGCGTATTCACGCTCGAGCCGGGGGAGTTCG
TCCATATCAACAAGGGGCGTCTTCACGCCTTCCGGAAGGAGGACCCTCTG
CCGCACGTGAGGGTCGGCTGTCTACTCTAGCTGAACTTCTGCCCCAGCGT
ATTCACGCTCGAGCCGGGGGAGTTCGTCCATATCAACAAGGGGCGTCTTC
ACGCCTTCCGGAAGGAGGACCCTCTGCCGCACGTGAGGGTCGGCTGTCTA
CTCTAG
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