mRNA_E-fasciculatus_F_contig12340.1806.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12340.1806.1
Unique NamemRNA_E-fasciculatus_F_contig12340.1806.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12340.1806.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.910e-35
Identity = 151/196 (77.04%), Postives = 155/196 (79.08%), Query Frame = 2 
Query:   14 GVGVVNGLAIARDTESRGSSSSNHPVGVLGQGGGSSRGCSGDEDAEVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKTRIACFPAVEARVRALKSKPDDRGCLTVLRQLKHLQTAASEXXXXXXXXXXXXXXDPAAGRGGV-DAGVLGPKNGVRNVLNNVLTDGQIERILLEEL 598
            G G  NGLA ARDTE RGS    +P GVLG  GG SRGCSGDEDAEVGA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KTRIACFP+VEARVRALKSKPDDRG LTVLRQLKHLQTA+ E     XXXXXXXXX        V D G LGPKN V+NVLNNVLTD QIERILLEEL
Sbjct:  746 GGGFPNGLATARDTEGRGS----NPAGVLGPPGGGSRGCSGDEDAEVGAGARRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TKTRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQTASEEGGKEVXXXXXXXXXXXXXXXXXVVDDGALGPKNDVKNVLNNVLTDAQIERILLEEL 935
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BLAST of mRNA_E-fasciculatus_F_contig12340.1806.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.080e-32
Identity = 136/195 (69.74%), Postives = 140/195 (71.79%), Query Frame = 2 
Query:   14 GVGVVNGLAIARDTESRGSSSSNHPVGVLGQGGGSSRGCSGDEDAEVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKTRIACFPAVEARVRALKSKPDDRGCLTVLRQLKHLQTAASEXXXXXXXXXXXXXXDPAAGRGGVDAGVLGPKNGVRNVLNNVLTDGQIERILLEEL 598
            G G V+G AIARDTE R S    +P GV G  GG SRGCSGDEDAEVGA                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  TRIACFP+VEARVRALKSKPDDRG LTVLRQLKHLQTA  E      XXXXXXXX        VD GVLGPKN V+NV NNVLTD QIERILLEEL
Sbjct:  895 GGGFVHGSAIARDTEGRDS----NPAGVPGPPGGGSRGCSGDEDAEVGAGGRRSRRSASMGQEQDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQTACEEGGKEFGXXXXXXXXXXXXXXV-VDDGVLGPKNEVKNVSNNVLTDAQIERILLEEL 1082
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12340.1806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK51_ECTSI2.910e-3577.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVK7_9PHAE6.080e-3269.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12340contigE-fasciculatus_F_contig12340:107..2415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FK51
KEGG koko:K20523,ko:K20865
KEGG Pathwayko04621,map04621
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size1067
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12340.1806.1prot_E-fasciculatus_F_contig12340.1806.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12340 573..2225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927741.121163-UTR-E-fasciculatus_F_contig12340:106..5721622927741.121163-UTR-E-fasciculatus_F_contig12340:106..572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12340 107..572 -
1695995674.7619152-UTR-E-fasciculatus_F_contig12340:106..5721695995674.7619152-UTR-E-fasciculatus_F_contig12340:106..572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12340 107..572 -
1622927741.2418942-UTR-E-fasciculatus_F_contig12340:2225..24151622927741.2418942-UTR-E-fasciculatus_F_contig12340:2225..2415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12340 2226..2415 -
1695995674.8075242-UTR-E-fasciculatus_F_contig12340:2225..24151695995674.8075242-UTR-E-fasciculatus_F_contig12340:2225..2415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12340 2226..2415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927741.1893091-CDS-E-fasciculatus_F_contig12340:572..6851622927741.1893091-CDS-E-fasciculatus_F_contig12340:572..685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 573..685 -
1695995674.7777328-CDS-E-fasciculatus_F_contig12340:572..6851695995674.7777328-CDS-E-fasciculatus_F_contig12340:572..685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 573..685 -
1622927741.2040887-CDS-E-fasciculatus_F_contig12340:1339..14871622927741.2040887-CDS-E-fasciculatus_F_contig12340:1339..1487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 1340..1487 -
1695995674.7866018-CDS-E-fasciculatus_F_contig12340:1339..14871695995674.7866018-CDS-E-fasciculatus_F_contig12340:1339..1487Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 1340..1487 -
1622927741.2244327-CDS-E-fasciculatus_F_contig12340:2075..22251622927741.2244327-CDS-E-fasciculatus_F_contig12340:2075..2225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 2076..2225 -
1695995674.7974463-CDS-E-fasciculatus_F_contig12340:2075..22251695995674.7974463-CDS-E-fasciculatus_F_contig12340:2075..2225Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 2076..2225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12340.1806.1

>prot_E-fasciculatus_F_contig12340.1806.1 ID=prot_E-fasciculatus_F_contig12340.1806.1|Name=mRNA_E-fasciculatus_F_contig12340.1806.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
MGQEQDLEVDSPPPPSKRYRNNSAGASCSSSSSSSSSSVKTRIACFPAVE
ARVRALKSKPDDRGCLTVLRQLKHLQTAASEEGGKEVGGGGSSSSDPAAG
RGGVDAGVLGPKNGVRNVLNNVLTDGQIERILLEEL*
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mRNA from alignment at E-fasciculatus_F_contig12340:107..2415-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12340.1806.1 ID=mRNA_E-fasciculatus_F_contig12340.1806.1|Name=mRNA_E-fasciculatus_F_contig12340.1806.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2309bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12340:107..2415- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCGCCACCGCAGGCGTAGGCGTCGTGAACGGGTTGGCAATAGCGAGGG
ATACGGAGAGTCGTGGCAGCAGCAGCAGCAACCACCCTGTCGGTGTGCTG
GGGCAGGGCGGGGGTAGTAGCCGCGGGTGTAGCGGCGACGAAGACGCCGA
AGTCGGGGCGGGAGCTAGAAGGAGCCGGCGGTCGGCGTCCATGGGGCAGG
AACAGGACCTGGAGGTGGACAGCCCGCCGCCGCCGAGCAAGCGCTACCGC
AACAACAGCGCCGGTGCCAGCTGCAGCAGCAGCAGCAGCAGCTCCTCCTC
CTCCGTCAAGACTAGGATCGCCTGCTTTCCCGCCGTGGAGGTGTGTGTGT
TTGTGGATTGGTCCGTCCAAGTTGCCAGCCCTTTTCCAAGGGTGGTTGGG
TCTGGTCTGTGCTAAAAAGTCGTCCAAGTTTTTCCACCATGTGACATGTT
TTGGCTTTCACCGTGTGACATATTTGTTTGGTTGAGCATTGCTTTCAAAA
CGTCGTTGTACTGATGAATTTTCTGCTCTTTTTCATAAACGTCCATTCTC
AAGGGAGGGCGGAGTAGACACAGAGTGAGTCCTATTGCCATCAAGTTGTA
TCGCAAGAACGGATTGGTGCCTTTTTTTTTTTCTGTTGGGCACAGGCGTA
ATTGAAGCATTTATATTTTATTTTTTTGAGGGGGGGGGGTGCCTTGCTCC
CTAAATATTAAATAGAGGATTTTGCTATCCTTGGTGCGGAGGAACTGCTG
TCATCGTTTGCGGTTAGCGGGAACAGAGATTGGAACCCTTGGCCAACGTT
GGCGTAGCTTTCACTCAGACGGGTGGTTTGTTGCTGCTCAAATCCGAATC
CGAGACCAGTAAGCCATCTTTGCCGCGTTTTCATTCAGCCTCCACGCACG
CCCCCGCGGCACGCCCCCCCCGCGGCAGGCTCGCGTCCGCGCTCTCAAGT
CCAAGCCTGACGACAGGGGGTGCTTGACCGTGCTGCGGCAGCTCAAGCAC
CTCCAGACCGCCGCGTCGGAGGAGGGAGGGAAGGAGGTCGGCGGCGGTGG
CAGCAGTAGCAGCGATCCCGCCGCAGGTGTGATGATGATCAAGGCTGTTT
GCGGACACGGGTCGGAAGAAGGAATCGGTCGCGTGCATCGGGTTTTTGTG
TCGGTCGGTTGTTGACGTGTCGTAATACACGCACCACAGTAGAGCCATTT
TAGGGCAACCGCATTAGGTAGCAAAGGGCGAGCTTAGGATGCCTGGCAAG
GCAAAGGTGGGTTTAGAACGCGTTCGAGATTTCGGCGTGTCTGTCTGTCT
TGTCTTGTCTCTCAATGGACGAAAACGTAAAGAAGAATCTGGGTTTGGTT
GGTTCCCCTTTATGTTGGGCTGGATCTCTATGGTTTGCTTGTATGTGCAC
AATCCCGTCTCGTATTCCTATTTATAGTATCTACAAATACGCGGGTCGAC
AAACAAACCTTCGTGTCGATCTTATCTCCACAAGCACCATGCCGCCACGC
CGCGTTGAGAGGGTGCGTCGCAGCATGAATCACAGAAGCCCGCCGCGTCT
CTCGGTTCCTGTTCCAATGTGTCGCTCTCTCTCTCTCTCTCACACACACG
CTCTCTCTCACACACACGCTCTCCTCTCTCACACACACACCACCCCCTTT
CCCCATGTGTCCCATGCCTTTCTTTTTCTGCTTGCTGCTCTTTCTCGCTC
GCACCCGGGACTGGCTCATCGCCGCGAAAGGGAGGGGGGGAGTAGACGCC
GGGGTACTCGGCCCAAAGAACGGCGTTAGGAACGTTCTGAATAACGTTCT
CACGGACGGACAGATCGAGAGGATCCTTCTGGAGGAGCTCTGAGGTGTTA
GTGAAAAGCCCGTGGTGTGGGTGTCTGTACGCGTTACGCTTGCCGCTGCT
AGCGGTGTTGGATGACGGGGAGATGGAAGCTCGCCTTCCTTGTGGAGATG
GAAGCTCGCCTTCCTTGTCCTCTTCTCTCTCTCTCTCTCTCTTGCATACA
TTTTTGACCAGTAGTTTAGGTTTCATGTCGTCGTCTTCTTCTTTTTTTTT
TGTAGGCTGTGGGACTTCGGTTCCACTCGTATTCCCGTGTGTATTTATTT
ATTTTCCGTGTCCGTCTCTGTCCCGCACTCCTCCCAGCATTTTATTTTTG
CTTTGTGTCTTGTCCGATATTAAAGATCGCGCGAGAAGTATGCGAAGATA
AGCGGCCCTCGCCGCCTCCCCCTCTCCAGCTCCCACGGCAGGGAGAGGGG
GTGCAGGAGAGGGCAAGGGCGTGTCGGGTCCGTGTTTTTTTTTTTGTTGT
TGTCTGGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12340:107..2415-

>mRNA_E-fasciculatus_F_contig12340.1806.1 ID=mRNA_E-fasciculatus_F_contig12340.1806.1|Name=mRNA_E-fasciculatus_F_contig12340.1806.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12340:107..2415- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGCAGGAACAGGACCTGGAGGTGGACAGCCCGCCGCCGCCGAGCAA
GCGCTACCGCAACAACAGCGCCGGTGCCAGCTGCAGCAGCAGCAGCAGCA
GCTCCTCCTCCTCCGTCAAGACTAGGATCGCCTGCTTTCCCGCCGTGGAG
ATGGGGCAGGAACAGGACCTGGAGGTGGACAGCCCGCCGCCGCCGAGCAA
GCGCTACCGCAACAACAGCGCCGGTGCCAGCTGCAGCAGCAGCAGCAGCA
GCTCCTCCTCCTCCGTCAAGACTAGGATCGCCTGCTTTCCCGCCGTGGAG
GCTCGCGTCCGCGCTCTCAAGTCCAAGCCTGACGACAGGGGGTGCTTGAC
CGTGCTGCGGCAGCTCAAGCACCTCCAGACCGCCGCGTCGGAGGAGGGAG
GGAAGGAGGTCGGCGGCGGTGGCAGCAGTAGCAGCGATCCCGCCGCAGGC
TCGCGTCCGCGCTCTCAAGTCCAAGCCTGACGACAGGGGGTGCTTGACCG
TGCTGCGGCAGCTCAAGCACCTCCAGACCGCCGCGTCGGAGGAGGGAGGG
AAGGAGGTCGGCGGCGGTGGCAGCAGTAGCAGCGATCCCGCCGCAGGGAG
GGGGGGAGTAGACGCCGGGGTACTCGGCCCAAAGAACGGCGTTAGGAACG
TTCTGAATAACGTTCTCACGGACGGACAGATCGAGAGGATCCTTCTGGAG
GAGCTCTGAGGAGGGGGGGAGTAGACGCCGGGGTACTCGGCCCAAAGAAC
GGCGTTAGGAACGTTCTGAATAACGTTCTCACGGACGGACAGATCGAGAG
GATCCTTCTGGAGGAGCTCTGA
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