mRNA_E-fasciculatus_F_contig12340.1807.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12340.1807.1
Unique NamemRNA_E-fasciculatus_F_contig12340.1807.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12340.1807.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 5.920e-47
Identity = 141/235 (60.00%), Postives = 148/235 (62.98%), Query Frame = 1 
Query:    1 KRYPGNGGGRIGDGAGKDFTGVALNNAHQPQRRQXXXXXXXXXXXXXXXAVPATEEAMPPHPP--YPPHXXSSEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPATAGPSHGXXXXXXXXXXPGVAGRAVSDNAGCHGGAXXXXXXXTERAAAATAAVPEALRVSLVEALHQIAQLPFSAAELWSLHQHYFSPPLEHHPSPSSXXXXXXXXXXXXXXXTCPSKAGGPGRTW 699
            KR PG+GG RIGDGAGKDFTG ALNNAHQPQRRQ               A   TE+A+PPHPP  Y PH  S  +                              LG A  G  HGXXX       PGV+GRAVS +AGC GG        TERAAAA   VPEALR SLVEALHQIAQLPFSAAELWSLHQHYFSPPL+HHPSPSSXXXXXXXXXXXXXXX CPS AG PGRTW
Sbjct:  673 KRDPGDGGSRIGDGAGKDFTGGALNNAHQPQRRQQCMGGGSPT------AAVVTEKAIPPHPPSEYRPHHLSRYH-----------QHQGDHQQNANPPGVREAALGAAATG-HHGXXXGGRHH--PGVSGRAVSADAGCQGGVGSSGGDGTERAAAA---VPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSPSSXXXXXXXXXXXXXXX-CPSNAG-PGRTW 882
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BLAST of mRNA_E-fasciculatus_F_contig12340.1807.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 5.850e-26
Identity = 75/109 (68.81%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:  373 PGVAGRAVSDNAGCHGGAXXXXXXXTERAAAATAAVPEALRVSLVEALHQIAQLPFSAAELWSLHQHYFSPPLEHHPSPSSXXXXXXXXXXXXXXXTCPSKAGGPGRTW 699
            PGV  RAVS++AGC GG  XXXXXX        A VPEALR SLVEALHQIAQLPFSAAELWSLHQHYFSPPL+HHPSPSS               TCPSKAG PGRTW
Sbjct:  629 PGVPRRAVSEDAGCRGGVGXXXXXXXXXXXXXXA-VPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSPSSRSSPTSAASTPSPS-TCPSKAG-PGRTW 734
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12340.1807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVK7_9PHAE5.920e-4760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK51_ECTSI5.850e-2668.81Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12340contigE-fasciculatus_F_contig12340:2466..3572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FK51
KEGG koko:K20523,ko:K20865
KEGG Pathwayko04621,map04621
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size699
Cds size699
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927741.0562706-CDS-E-fasciculatus_F_contig12340:2465..26331622927741.0562706-CDS-E-fasciculatus_F_contig12340:2465..2633Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 2466..2633 -
1695995674.7371364-CDS-E-fasciculatus_F_contig12340:2465..26331695995674.7371364-CDS-E-fasciculatus_F_contig12340:2465..2633Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 2466..2633 -
1622927741.0735555-CDS-E-fasciculatus_F_contig12340:3041..35721622927741.0735555-CDS-E-fasciculatus_F_contig12340:3041..3572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 3042..3572 -
1695995674.7498841-CDS-E-fasciculatus_F_contig12340:3041..35721695995674.7498841-CDS-E-fasciculatus_F_contig12340:3041..3572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12340 3042..3572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12340.1807.1prot_E-fasciculatus_F_contig12340.1807.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12340 2466..3572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12340.1807.1

>prot_E-fasciculatus_F_contig12340.1807.1 ID=prot_E-fasciculatus_F_contig12340.1807.1|Name=mRNA_E-fasciculatus_F_contig12340.1807.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=233bp
KRYPGNGGGRIGDGAGKDFTGVALNNAHQPQRRQQQCMGGGRGPTTTTAA
VPATEEAMPPHPPYPPHPPSSEYGPHHQSRYHQSHHASGHQQNAYPPGAR
EGALGPATAGPSHGGGGSGGRHHHPGVAGRAVSDNAGCHGGASSGGGSGT
ERAAAATAAVPEALRVSLVEALHQIAQLPFSAAELWSLHQHYFSPPLEHH
PSPSSHSSPTSAASTPSPSSTCPSKAGGPGRTW
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mRNA from alignment at E-fasciculatus_F_contig12340:2466..3572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12340.1807.1 ID=mRNA_E-fasciculatus_F_contig12340.1807.1|Name=mRNA_E-fasciculatus_F_contig12340.1807.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1107bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12340:2466..3572- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAAGATATCCCGGCAACGGTGGCGGCAGGATAGGCGACGGCGCCGGCAA
GGACTTTACTGGCGTAGCGTTGAACAACGCGCATCAGCCTCAGAGACGAC
AGCAGCAGTGCATGGGAGGCGGCAGGGGGCCTACAACTACTACCGCGGCG
GTACCTGCTACGGAGGAGGCCATGCCTCCACACCCTCCATACCCTCCACA
CCCTCCATCATCGGAGTATGGTCCCCACCACCAGTCGCGATACCACCAAT
CACACCACGCCAGCGGTCACCAGCAGAACGCGTACCCACCGGGGGCGAGA
GAGGGGGCTTTAGGGCCGGCCACCGCTGGACCTAGCCACGGGGGCGGCGG
CAGCGGAGGGAGGCATCATCATCCCGGTGTTGCGGGGAGAGCGGTGTCAG
ATAACGCTGGGTGTCACGGGGGGGCGAGCAGCGGCGGCGGTAGTGGAACG
GAGAGAGCGGCGGCGGCGACGGCGGCTGTACCAGAAGCGCTTCGTGTTTC
CCTGGTTGAAGCTCTGCATCAGATTGCCCAGGTACGAGGTCGGGAACTGC
TTTTTTTTTTAGGCACCGCGACACATGAGGTAGGTAGGTTATGGTGGGGC
GACAACACGCGCCTGTCGCTATCTTGTTTTTTGAGTCCGTGACGTTTTGG
CAGTCGGGTGTAGGCTGTCCCTTCAGTGTGTGTTTTTTTCAAGTGTGGGA
GTCGCACGCTCCCCTGGAGGCTGCTGTCTTGCAGGGGCATCCATTCATTC
GTTATATTCGTCGACGTCTTTTCAGGCAAGGGACGACGTTCCCCTCCCTC
CCGTCCCCCGCCGTCCCCACGGAGGCGAAGTCGGTAGACCAAATCCCATC
CCTAAAGGTATCGCTCTCTCTCTCAGCCTTACTTCACCCCTGTGTCTGCT
GCTGCTCGATTCCTTCTCGACGACCACAACAACAAGCAGCTGCCTTTCAG
CGCGGCGGAGCTCTGGAGCCTCCACCAGCACTACTTCAGCCCGCCCTTGG
AGCACCACCCATCCCCGTCTTCCCACTCCTCCCCGACCTCGGCGGCATCC
ACGCCGTCCCCGTCCTCCACCTGTCCCTCGAAAGCCGGCGGTCCCGGCAG
GACTTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12340:2466..3572-

>mRNA_E-fasciculatus_F_contig12340.1807.1 ID=mRNA_E-fasciculatus_F_contig12340.1807.1|Name=mRNA_E-fasciculatus_F_contig12340.1807.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12340:2466..3572- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAAGATATCCCGGCAACGGTGGCGGCAGGATAGGCGACGGCGCCGGCAA
GGACTTTACTGGCGTAGCGTTGAACAACGCGCATCAGCCTCAGAGACGAC
AGCAGCAGTGCATGGGAGGCGGCAGGGGGCCTACAACTACTACCGCGGCG
GTACCTGCTACGGAGGAGGCCATGCCTCCACACCCTCCATACCCTCCACA
CCCTCCATCATCGGAGTATGGTCCCCACCACCAGTCGCGATACCACCAAT
CACACCACGCCAGCGGTCACCAGCAGAACGCGTACCCACCGGGGGCGAGA
GAGGGGGCTTTAGGGCCGGCCACCGCTGGACCTAGCCACGGGGGCGGCGG
CAGCGGAGGGAGGCATCATCATCCCGGTGTTGCGGGGAGAGCGGTGTCAG
ATAACGCTGGGTGTCACGGGGGGGCGAGCAGCGGCGGCGGTAGTGGAACG
GAGAGAGCGGCGGCGGCGACGGCGGCTGTACCAGAAGCGCTTCGTGTTTC
CCTGGTTGAAGCTCTGCATCAGATTGCCCAGAAAAGATATCCCGGCAACG
GTGGCGGCAGGATAGGCGACGGCGCCGGCAAGGACTTTACTGGCGTAGCG
TTGAACAACGCGCATCAGCCTCAGAGACGACAGCAGCAGTGCATGGGAGG
CGGCAGGGGGCCTACAACTACTACCGCGGCGGTACCTGCTACGGAGGAGG
CCATGCCTCCACACCCTCCATACCCTCCACACCCTCCATCATCGGAGTAT
GGTCCCCACCACCAGTCGCGATACCACCAATCACACCACGCCAGCGGTCA
CCAGCAGAACGCGTACCCACCGGGGGCGAGAGAGGGGGCTTTAGGGCCGG
CCACCGCTGGACCTAGCCACGGGGGCGGCGGCAGCGGAGGGAGGCATCAT
CATCCCGGTGTTGCGGGGAGAGCGGTGTCAGATAACGCTGGGTGTCACGG
GGGGGCGAGCAGCGGCGGCGGTAGTGGAACGGAGAGAGCGGCGGCGGCGA
CGGCGGCTGTACCAGAAGCGCTTCGTGTTTCCCTGGTTGAAGCTCTGCAT
CAGATTGCCCAGCTGCCTTTCAGCGCGGCGGAGCTCTGGAGCCTCCACCA
GCACTACTTCAGCCCGCCCTTGGAGCACCACCCATCCCCGTCTTCCCACT
CCTCCCCGACCTCGGCGGCATCCACGCCGTCCCCGTCCTCCACCTGTCCC
TCGAAAGCCGGCGGTCCCGGCAGGACTTGGCTGCCTTTCAGCGCGGCGGA
GCTCTGGAGCCTCCACCAGCACTACTTCAGCCCGCCCTTGGAGCACCACC
CATCCCCGTCTTCCCACTCCTCCCCGACCTCGGCGGCATCCACGCCGTCC
CCGTCCTCCACCTGTCCCTCGAAAGCCGGCGGTCCCGGCAGGACTTGG
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