mRNA_E-fasciculatus_F_contig12339.1804.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12339.1804.1
Unique NamemRNA_E-fasciculatus_F_contig12339.1804.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12339.1804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12339contigE-fasciculatus_F_contig12339:1104..1784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size683
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927740.8838735-UTR-E-fasciculatus_F_contig12339:1103..13941622927740.8838735-UTR-E-fasciculatus_F_contig12339:1103..1394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12339 1104..1394 +
1695995674.65585-UTR-E-fasciculatus_F_contig12339:1103..13941695995674.65585-UTR-E-fasciculatus_F_contig12339:1103..1394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12339 1104..1394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927740.8992286-CDS-E-fasciculatus_F_contig12339:1394..17841622927740.8992286-CDS-E-fasciculatus_F_contig12339:1394..1784Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12339 1395..1784 +
1695995674.664358-CDS-E-fasciculatus_F_contig12339:1394..17841695995674.664358-CDS-E-fasciculatus_F_contig12339:1394..1784Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12339 1395..1784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12339.1804.1prot_E-fasciculatus_F_contig12339.1804.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12339 1395..1784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12339.1804.1

>prot_E-fasciculatus_F_contig12339.1804.1 ID=prot_E-fasciculatus_F_contig12339.1804.1|Name=mRNA_E-fasciculatus_F_contig12339.1804.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
MLFSSLILFVSSNYCCTACSNALPTFRVCTVDMDSKPRWWRQGDNHQHNY
KGNRETIRADECVYTHLPGATGGLRRRTTRCFVAPWASERNCPLSAPSKN
LPMTLTSLRHMTYGEGAHCCTSSEQARTIP
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mRNA from alignment at E-fasciculatus_F_contig12339:1104..1784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12339.1804.1 ID=mRNA_E-fasciculatus_F_contig12339.1804.1|Name=mRNA_E-fasciculatus_F_contig12339.1804.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=681bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12339:1104..1784+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAATGGTATCAATGAGCCCGGTGAGAAAAACCGCGCGCCACTCTCGAA
ATCACCGTCGACGAGGTAATGGGGCTGGTGAACACTTGTCGCAACAAAAG
CTGAGGCAACAATTAATTGTAGGTATAAATGAGAGGGACAATAGAAACCC
GAGCTGCCATCTGGAAGGCTACCATGGTAGAGTGTGTGTGTGGGGGGGTG
TGTCCGGAATTTTACTTCGCGCGGGTCGGTAGAGGGTCAAACCTGGATTT
CTGCGAACACTTCGGTTGAAGGAGCACCCGCTGCGTCGCTCATGTTATTT
AGTTCGCTCATATTATTTGTTTCGTCCAACTACTGCTGTACAGCTTGCAG
CAATGCACTCCCGACGTTCCGGGTATGTACCGTAGACATGGACAGCAAGC
CGCGGTGGTGGAGGCAAGGCGACAACCATCAGCATAATTACAAGGGCAAT
CGGGAGACCATCCGGGCGGATGAATGCGTGTACACCCATCTTCCAGGTGC
CACTGGTGGCCTTCGCCGGCGGACCACACGATGTTTTGTGGCACCTTGGG
CATCGGAGAGAAACTGCCCGCTCTCTGCACCGAGCAAAAACCTGCCTATG
ACCTTGACATCCTTACGCCACATGACCTACGGGGAAGGAGCCCACTGCTG
TACGTCGTCGGAACAAGCACGCACTATACCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12339:1104..1784+

>mRNA_E-fasciculatus_F_contig12339.1804.1 ID=mRNA_E-fasciculatus_F_contig12339.1804.1|Name=mRNA_E-fasciculatus_F_contig12339.1804.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12339:1104..1784+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTATTTAGTTCGCTCATATTATTTGTTTCGTCCAACTACTGCTGTAC
AGCTTGCAGCAATGCACTCCCGACGTTCCGGGTATGTACCGTAGACATGG
ACAGCAAGCCGCGGTGGTGGAGGCAAGGCGACAACCATCAGCATAATTAC
AAGGGCAATCGGGAGACCATCCGGGCGGATGAATGCGTGTACACCCATCT
TCCAGGTGCCACTGGTGGCCTTCGCCGGCGGACCACACGATGTTTTGTGG
CACCTTGGGCATCGGAGAGAAACTGCCCGCTCTCTGCACCGAGCAAAAAC
CTGCCTATGACCTTGACATCCTTACGCCACATGACCTACGGGGAAGGAGC
CCACTGCTGTACGTCGTCGGAACAAGCACGCACTATACCAATGTTATTTA
GTTCGCTCATATTATTTGTTTCGTCCAACTACTGCTGTACAGCTTGCAGC
AATGCACTCCCGACGTTCCGGGTATGTACCGTAGACATGGACAGCAAGCC
GCGGTGGTGGAGGCAAGGCGACAACCATCAGCATAATTACAAGGGCAATC
GGGAGACCATCCGGGCGGATGAATGCGTGTACACCCATCTTCCAGGTGCC
ACTGGTGGCCTTCGCCGGCGGACCACACGATGTTTTGTGGCACCTTGGGC
ATCGGAGAGAAACTGCCCGCTCTCTGCACCGAGCAAAAACCTGCCTATGA
CCTTGACATCCTTACGCCACATGACCTACGGGGAAGGAGCCCACTGCTGT
ACGTCGTCGGAACAAGCACGCACTATACCA
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