mRNA_E-fasciculatus_F_contig12337.1803.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12337.1803.1
Unique NamemRNA_E-fasciculatus_F_contig12337.1803.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12337.1803.1 vs. uniprot
Match: A0A6H5KST7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST7_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 4.510e-100
Identity = 236/375 (62.93%), Postives = 251/375 (66.93%), Query Frame = 1 
Query:    1 MFSFGQHVRAHVNSIEERQRRTLSDVSNSAGNHANNES--RVARQXXXXXXXXXXXXGKNL-TLETQDAFLQ---AAMPPATHMSYEDFELKRRQQYXXXXXXXXELESLVKLLQEQNHQLRRENDRTLEIEDLQREQRSEGTQAALGPDSTEVASLRSQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAWRTELNVLKKKQAGSASEWKREAVVLEQRVAAWRRHAEEQERQVKALREQLAKSDQQRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYSSQGCDRQRERARQREGIATADALVKEAVLNRFFGGKVKVXXXXXXXXXXASDEHERXXXXXXXXXKTATGVKEAERLSTAKRQVAEAVTLRKEA 1107
            MFSFGQHVRAHVNSIEERQRRTLSDVSNSAGN ANNES  R ARQ            GKN  TLETQ+AFLQ   AAMPPATHMSYEDFELKRRQQY        ELESLVKLLQEQNHQLRRE DRTLEIE+LQREQRSE TQ ALGPDSTEVASLRS++A       XXXXXXXXXXXXXXXXXXXX  WR EL+VL+K+ A SASEWKREA VLE RVAAWRRHA+EQERQVKALRE                                          QGC R+R + R+REG+A A ALVKE V+NRFFGG VK           A+D  E          K ATG  EAER STAK+QVAE VT RKEA
Sbjct:    1 MFSFGQHVRAHVNSIEERQRRTLSDVSNSAGN-ANNESCGRAARQLEQQQQ------GKNNPTLETQEAFLQYYQAAMPPATHMSYEDFELKRRQQYFELQRRQRELESLVKLLQEQNHQLRREKDRTLEIEELQREQRSESTQVALGPDSTEVASLRSELATARGEASXXXXXXXXXXXXXXXXXXXXXEWRAELSVLRKQHARSASEWKREAAVLEHRVAAWRRHAQEQERQVKALRE------------------------------------------QGCVRERXKEREREGVAAAGALVKEVVVNRFFGGSVK----------PATDSQECFFGGRVKVKKAATGKGEAERPSTAKQQVAEVVTPRKEA 316
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BLAST of mRNA_E-fasciculatus_F_contig12337.1803.1 vs. uniprot
Match: D7FMI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI6_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 3.530e-71
Identity = 187/218 (85.78%), Postives = 193/218 (88.53%), Query Frame = 1 
Query:    1 MFSFGQHVRAHVNSIEERQRRTLSDVSNSAGNHANNESRVARQXXXXXXXXXXXXGKNL-TLETQDAFLQAAMPPATHMSYEDFELKRRQQYXXXXXXXXELESLVKLLQEQNHQLRRENDRTLEIEDLQREQRSEGTQAALGPDSTEVASLRSQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAWRTELNVLKKKQAGSASEWKREAVVLEQRVAA 651
            MFSFGQHVRAHVNSIEERQRRTLSDVSNSAGN     +     XXXXXXXXXXXXGKN  TLETQ+AFLQAAMPPATHMSYEDFELKRRQQYXXXXXXXXELESLVKLLQEQNHQLRRENDRTLEIE+LQREQRSE TQ ALGPDSTEVASLRS+VA     XXXXXXXXXXXXXXXXXXXXXX  WR ELNVL+K+QAGS SEWKREA VLE RVAA
Sbjct:    1 MFSFGQHVRAHVNSIEERQRRTLSDVSNSAGN-----ANXXXXXXXXXXXXXXXXGKNNPTLETQEAFLQAAMPPATHMSYEDFELKRRQQYXXXXXXXXELESLVKLLQEQNHQLRRENDRTLEIEELQREQRSESTQVALGPDSTEVASLRSEVATARGEXXXXXXXXXXXXXXXXXXXXXXXEWRAELNVLRKQQAGSTSEWKREAAVLEHRVAA 213
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12337.1803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KST7_9PHAE4.510e-10062.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMI6_ECTSI3.530e-7185.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12337contigE-fasciculatus_F_contig12337:685..3929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_000450.1
Exons3
Model size1107
Cds size1107
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12337.1803.1prot_E-fasciculatus_F_contig12337.1803.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12337 685..3929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927740.8055518-CDS-E-fasciculatus_F_contig12337:684..8911622927740.8055518-CDS-E-fasciculatus_F_contig12337:684..891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12337 685..891 +
1695995674.6306515-CDS-E-fasciculatus_F_contig12337:684..8911695995674.6306515-CDS-E-fasciculatus_F_contig12337:684..891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12337 685..891 +
1622927740.8191588-CDS-E-fasciculatus_F_contig12337:2313..28111622927740.8191588-CDS-E-fasciculatus_F_contig12337:2313..2811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12337 2314..2811 +
1695995674.6389565-CDS-E-fasciculatus_F_contig12337:2313..28111695995674.6389565-CDS-E-fasciculatus_F_contig12337:2313..2811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12337 2314..2811 +
1622927740.8345854-CDS-E-fasciculatus_F_contig12337:3527..39291622927740.8345854-CDS-E-fasciculatus_F_contig12337:3527..3929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12337 3528..3929 +
1695995674.6472898-CDS-E-fasciculatus_F_contig12337:3527..39291695995674.6472898-CDS-E-fasciculatus_F_contig12337:3527..3929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12337 3528..3929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12337.1803.1

>prot_E-fasciculatus_F_contig12337.1803.1 ID=prot_E-fasciculatus_F_contig12337.1803.1|Name=mRNA_E-fasciculatus_F_contig12337.1803.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=369bp
MFSFGQHVRAHVNSIEERQRRTLSDVSNSAGNHANNESRVARQREQQPEQ
QQQQQGKNLTLETQDAFLQAAMPPATHMSYEDFELKRRQQYFELQRRQQE
LESLVKLLQEQNHQLRRENDRTLEIEDLQREQRSEGTQAALGPDSTEVAS
LRSQVATARGEASKATEAAVAASRAAATAEDAAAAWRTELNVLKKKQAGS
ASEWKREAVVLEQRVAAWRRHAEEQERQVKALREQLAKSDQQRRQQQQQQ
QHQKQQEQQQQQQQQQQQQQQQRYSSQGCDRQRERARQREGIATADALVK
EAVLNRFFGGKVKVKPATATATATASDEHERFFGGRVKVKKTATGVKEAE
RLSTAKRQVAEAVTLRKEA
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mRNA from alignment at E-fasciculatus_F_contig12337:685..3929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12337.1803.1 ID=mRNA_E-fasciculatus_F_contig12337.1803.1|Name=mRNA_E-fasciculatus_F_contig12337.1803.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3245bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12337:685..3929+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTTCGTTCGGCCAGCACGTGCGTGCGCACGTGAACAGCATCGAGGA
GCGTCAACGGCGAACGCTCTCGGATGTATCCAACTCCGCTGGCAACCACG
CGAACAACGAGAGCAGGGTTGCACGACAAAGAGAGCAGCAACCAGAGCAG
CAGCAGCAGCAGCAGGGGAAGAACCTAACGCTCGAGACCCAGGATGCTTT
CCTACAGGTGTGTTTGCGGGTGTGCACCAGGGGGAGGGCAATGAATGCGG
TTGCTTCTGTTGGCTCTGTGTGCGTATACGTAAAGCACCTTTTTAATTTT
TAAATTTCAGGAGCGAGGTCCCCCCGAATGCTACATAGAATAGATGAATA
GATGCACACACGAAAGTGCATGGTGGTCACACACGAAACGAACGAGCTCG
AGCTCGGGCTTATCCTCAAGCAAACCAGTACATCGTGACGTCGTCCGCTG
AACTTCTAGCGCTGTTAATCCCAGCATAGGACCGTGAACAACAGTCCCAA
GAAGTTGCACTTGGTGAACCCAGCGTATAATAAGTAGCAGAGAAGGGACA
CAGCACACAGCATTTTGTACACAACGGCAAATGGCAAATACGGCCGTTTT
CTCTTCCGTCAGGCCTCTGAGCATGACTATTTCAACCATTGCTGGTGTCC
GTTGCTCCGAAACTATCAGGTCAATCCATGTGCGTACGTATGCATACACG
TATGACTTGTTTCATCTCTAGCAGCCGAACCTTGCTTCGTGCTACGTGTA
AAGGGGTGCCTCTCCCTCTCGGTGGATTTTTTATTTTGAAAGATTGAAAG
ATTGAAAGATTGAAAGATTCCACGCTTGGAAGCCAAGTCTACACAGTAGA
ACTGTTGTTACTTCGAACGTAGAATTTAGAATTTAGTCTACCTGCTCCAT
GGGGTTCCGTAGATGCAGAAGATATGTACCGCCACCCCCTGGTCCGATTT
TCAAAGCTCGAGAGCTCTGCAACAAGAGTGACTGTGGCGACCCTCTCGTT
GATACATACAGTAGTTTCGAAATCTTGTCGTTGATGTTGACATTCTCATG
GAGTAATCGAGATTTGAAAATCGGTCCACATGTGGGATCTTCTGCAACCC
AAGATATTAGACTAGAGGCTTCATGATTTATGTATAGAAAAAATCCCTAC
TCTACGAGAGGGTGTGCAAGGGCTCGTGAAGCGTGGCCTCATCCCGCCTC
TCAGTAGGTAGGCGCCAGTTCCTTGGGTGTTATGTTGGCGAGGAAGTGCC
GAGCTGGTCAGGACCTTGACTACTAGCGAGGGCAAGGTGAGAGTGAGTTT
GAGGGGGAGCTCAAGTAGCTCAGGGCCCTGACAGCAGTCCTTCGCGGAGA
AGACTGGAACCCACCTCGTAAACATTAAAAGTATAAAATTATGGTATTGC
ACTTGGGGCGTAGGCCTTTCGCCAAGGACCCCGTGCGGCGTTAATGGTTT
GCTTATGTCTTCGGAATGTATAGGGAATAGCAGTACATCCACATCACCCC
CCTCTTTTTTTTCCGCCGAAAGTTTGTCGGTAAAGCTGACTACATTGGCG
TACACTCAAATTTCGTTCTGTCATCTACATTTGCATAGAACGAGTTCATG
CAAATCTCTTTATTTCACAATATCACCAGGCGGCGATGCCTCCCGCGACT
CACATGTCGTACGAAGACTTCGAGCTCAAGCGTCGCCAGCAGTACTTCGA
GCTTCAGCGCCGCCAGCAGGAGTTGGAGAGCCTGGTCAAGCTCCTGCAGG
AGCAGAACCACCAGCTGCGAAGAGAGAACGACAGGACGCTTGAGATAGAA
GACCTGCAACGGGAGCAAAGATCCGAAGGCACGCAGGCAGCTCTCGGCCC
CGATAGCACGGAAGTAGCAAGCTTGCGGAGCCAAGTGGCGACCGCACGCG
GTGAAGCTTCCAAGGCTACGGAGGCTGCGGTCGCCGCTAGTCGAGCCGCG
GCTACCGCGGAGGACGCTGCTGCTGCATGGAGGACGGAGCTGAACGTGCT
GAAAAAGAAGCAGGCGGGATCGGCGTCGGAGTGGAAGAGGGAGGCGGTCG
TTCTGGAGCAGCGAGTCGCGGCCTGGCGGCGGCATGCGGAGGAGCAAGAG
CGGCAGGTCAAGGCTTTGAGAGAGCAGGTGGGGTGGTTACATGTGCCGTG
GTGACGTAGTGGGCCTGGTGTATCGTAGGTCTTTTGGGGCTCCTGCCCAC
CCCCAGCATGGCCGAATGTTGACTCTGAACTGCTGTTGTTGTTCCACTGG
TGTTGGAAACATCCTACCGGAAGAGTAAGATCCCAGCCTAGGAACATATG
AGGTGATGATGAGACGAACGTAGTCTCCAATTCCGCACGTACGAAAGCAT
ACTATAGCTTTTTTTCCGAGACGGACTACACTTTCGTTTGTCGTGTTGTA
GCCTGGTTCCTGTGGCTCTGTTTGTTTTGTTACAGCAATGAGTAAGACCG
CTTTGGCAGGATTGTGTTAGTTGCTTCGAAGTAATCAACCTGAAAGGAAA
TGGACGGAAAGCATATCCCGCCGTAGTGTACTATCGACACCCATGTAGCT
GTTGACTCGATGCCGACTCCTGTTGGTGCATGCAGGCTCTAACTTTGGTG
CCTTTGCTTGTCAGGGGCTAGCGATACCCCGTTGCTTACAATATATACGT
CGCCGAAATGTATCTCGTCCGTTTGTGACGGGTTGTTATTGGTTTTTTCA
TGCATGACTTCGTTTTCGCCCTCAACTGCATCTAGTCGTCGGTAGTAGCC
TACAGCGCTTGCTGGAGAGGGGTGCTTCGTTTCGAAAGTCAACAACGACC
CTGCTGCTGTCTGTGGAATCGTTCGTGGCTGACTCACAAGTAGCTGGCAA
AGTCCGACCAGCAGCGACGGCAGCAGCAGCAGCAGCAGCAGCACCAGAAG
CAGCAAGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCGGTACAGCAGTCAGGGATGTGATCGACAGAGGGAGAGAGCAAGAC
AGAGAGAAGGCATTGCCACGGCGGACGCTCTTGTGAAGGAGGCCGTGCTC
AATCGCTTTTTCGGGGGTAAGGTGAAGGTGAAACCAGCAACAGCAACAGC
AACAGCAACAGCATCGGACGAGCATGAGCGCTTCTTCGGGGGTAGGGTAA
AGGTAAAGAAGACAGCGACGGGCGTGAAGGAGGCAGAGAGACTCAGCACA
GCCAAGCGGCAGGTGGCGGAGGCGGTGACTCTAAGGAAGGAGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12337:685..3929+

>mRNA_E-fasciculatus_F_contig12337.1803.1 ID=mRNA_E-fasciculatus_F_contig12337.1803.1|Name=mRNA_E-fasciculatus_F_contig12337.1803.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2214bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12337:685..3929+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTTCGTTCGGCCAGCACGTGCGTGCGCACGTGAACAGCATCGAGGA
GCGTCAACGGCGAACGCTCTCGGATGTATCCAACTCCGCTGGCAACCACG
CGAACAACGAGAGCAGGGTTGCACGACAAAGAGAGCAGCAACCAGAGCAG
CAGCAGCAGCAGCAGGGGAAGAACCTAACGCTCGAGACCCAGGATGCTTT
CCTACAGATGTTTTCGTTCGGCCAGCACGTGCGTGCGCACGTGAACAGCA
TCGAGGAGCGTCAACGGCGAACGCTCTCGGATGTATCCAACTCCGCTGGC
AACCACGCGAACAACGAGAGCAGGGTTGCACGACAAAGAGAGCAGCAACC
AGAGCAGCAGCAGCAGCAGCAGGGGAAGAACCTAACGCTCGAGACCCAGG
ATGCTTTCCTACAGGCGGCGATGCCTCCCGCGACTCACATGTCGTACGAA
GACTTCGAGCTCAAGCGTCGCCAGCAGTACTTCGAGCTTCAGCGCCGCCA
GCAGGAGTTGGAGAGCCTGGTCAAGCTCCTGCAGGAGCAGAACCACCAGC
TGCGAAGAGAGAACGACAGGACGCTTGAGATAGAAGACCTGCAACGGGAG
CAAAGATCCGAAGGCACGCAGGCAGCTCTCGGCCCCGATAGCACGGAAGT
AGCAAGCTTGCGGAGCCAAGTGGCGACCGCACGCGGTGAAGCTTCCAAGG
CTACGGAGGCTGCGGTCGCCGCTAGTCGAGCCGCGGCTACCGCGGAGGAC
GCTGCTGCTGCATGGAGGACGGAGCTGAACGTGCTGAAAAAGAAGCAGGC
GGGATCGGCGTCGGAGTGGAAGAGGGAGGCGGTCGTTCTGGAGCAGCGAG
TCGCGGCCTGGCGGCGGCATGCGGAGGAGCAAGAGCGGCAGGTCAAGGCT
TTGAGAGAGCAGGCGGCGATGCCTCCCGCGACTCACATGTCGTACGAAGA
CTTCGAGCTCAAGCGTCGCCAGCAGTACTTCGAGCTTCAGCGCCGCCAGC
AGGAGTTGGAGAGCCTGGTCAAGCTCCTGCAGGAGCAGAACCACCAGCTG
CGAAGAGAGAACGACAGGACGCTTGAGATAGAAGACCTGCAACGGGAGCA
AAGATCCGAAGGCACGCAGGCAGCTCTCGGCCCCGATAGCACGGAAGTAG
CAAGCTTGCGGAGCCAAGTGGCGACCGCACGCGGTGAAGCTTCCAAGGCT
ACGGAGGCTGCGGTCGCCGCTAGTCGAGCCGCGGCTACCGCGGAGGACGC
TGCTGCTGCATGGAGGACGGAGCTGAACGTGCTGAAAAAGAAGCAGGCGG
GATCGGCGTCGGAGTGGAAGAGGGAGGCGGTCGTTCTGGAGCAGCGAGTC
GCGGCCTGGCGGCGGCATGCGGAGGAGCAAGAGCGGCAGGTCAAGGCTTT
GAGAGAGCAGCTGGCAAAGTCCGACCAGCAGCGACGGCAGCAGCAGCAGC
AGCAGCAGCACCAGAAGCAGCAAGAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCGGTACAGCAGTCAGGGATGTGATCGACA
GAGGGAGAGAGCAAGACAGAGAGAAGGCATTGCCACGGCGGACGCTCTTG
TGAAGGAGGCCGTGCTCAATCGCTTTTTCGGGGGTAAGGTGAAGGTGAAA
CCAGCAACAGCAACAGCAACAGCAACAGCATCGGACGAGCATGAGCGCTT
CTTCGGGGGTAGGGTAAAGGTAAAGAAGACAGCGACGGGCGTGAAGGAGG
CAGAGAGACTCAGCACAGCCAAGCGGCAGGTGGCGGAGGCGGTGACTCTA
AGGAAGGAGGCGCTGGCAAAGTCCGACCAGCAGCGACGGCAGCAGCAGCA
GCAGCAGCAGCACCAGAAGCAGCAAGAACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCGGTACAGCAGTCAGGGATGTGATCGA
CAGAGGGAGAGAGCAAGACAGAGAGAAGGCATTGCCACGGCGGACGCTCT
TGTGAAGGAGGCCGTGCTCAATCGCTTTTTCGGGGGTAAGGTGAAGGTGA
AACCAGCAACAGCAACAGCAACAGCAACAGCATCGGACGAGCATGAGCGC
TTCTTCGGGGGTAGGGTAAAGGTAAAGAAGACAGCGACGGGCGTGAAGGA
GGCAGAGAGACTCAGCACAGCCAAGCGGCAGGTGGCGGAGGCGGTGACTC
TAAGGAAGGAGGCG
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